Wall clock time and date at job start Tue Mar 31 2020 05:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86805 * 120.00061 * 2 1 4 4 H 1.48500 * 109.46806 * 269.99750 * 3 2 1 5 5 H 1.48493 * 109.47173 * 30.00115 * 3 2 1 6 6 H 1.48501 * 109.47193 * 149.99953 * 3 2 1 7 7 C 1.39894 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99756 * 196.80730 * 7 2 1 9 9 C 1.41134 * 120.00017 * 16.80699 * 7 2 1 10 10 C 1.40881 * 120.16080 * 25.37509 * 9 7 2 11 11 C 1.36356 * 119.82907 * 180.27341 * 10 9 7 12 12 C 1.39512 * 120.16650 * 359.45816 * 11 10 9 13 13 N 1.39141 * 119.83646 * 180.27644 * 12 11 10 14 14 C 1.34780 * 119.99846 * 40.97760 * 13 12 11 15 15 S 1.71198 * 120.00292 * 5.74796 * 14 13 12 16 16 N 1.34780 * 119.99836 * 185.74747 * 14 13 12 17 17 C 1.46500 * 119.99899 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46969 * 179.97438 * 17 16 14 19 19 S 1.81405 * 109.47095 * 180.02562 * 18 17 16 20 20 C 1.81393 * 102.99832 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47207 * 294.99753 * 20 19 18 22 22 C 1.52999 * 109.47343 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47267 * 60.00073 * 22 21 20 24 24 C 1.52998 * 109.46880 * 300.00211 * 23 22 21 25 25 C 1.52999 * 109.47343 * 59.99835 * 24 23 22 26 26 C 1.39508 * 120.32936 * 0.25582 * 12 11 10 27 27 C 1.36357 * 120.16340 * 0.02562 * 26 12 11 28 28 H 0.96995 * 119.99797 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.08883 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91660 * 179.73870 * 11 10 9 31 31 H 0.96993 * 120.00063 * 220.97329 * 13 12 11 32 32 H 0.97004 * 119.99920 * 359.97438 * 16 14 13 33 33 H 1.09000 * 109.47252 * 299.99919 * 17 16 14 34 34 H 1.09004 * 109.46850 * 60.00128 * 17 16 14 35 35 H 1.09000 * 109.47194 * 300.00110 * 18 17 16 36 36 H 1.09004 * 109.47103 * 60.00438 * 18 17 16 37 37 H 1.08999 * 109.47749 * 54.99974 * 20 19 18 38 38 H 1.08999 * 109.47740 * 300.00237 * 21 20 19 39 39 H 1.08995 * 109.47290 * 60.00296 * 21 20 19 40 40 H 1.08999 * 109.47453 * 300.00123 * 22 21 20 41 41 H 1.09005 * 109.47499 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.47309 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47268 * 60.00003 * 23 22 21 44 44 H 1.09006 * 109.47357 * 299.99940 * 24 23 22 45 45 H 1.09003 * 109.47108 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.47499 * 179.97438 * 25 24 23 47 47 H 1.08999 * 109.46974 * 60.00104 * 25 24 23 48 48 H 1.07998 * 119.91898 * 180.02562 * 26 12 11 49 49 H 1.08005 * 120.08555 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5405 1.4402 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0537 -1.2313 0.2710 9 6 1.3479 -2.4078 -0.3523 10 6 0.2146 -2.3706 -1.1884 11 6 -0.4216 -3.5300 -1.5205 12 6 0.0537 -4.7519 -1.0438 13 7 -0.5974 -5.9314 -1.3917 14 6 -1.0466 -6.1071 -2.6502 15 16 -0.6885 -4.9467 -3.8569 16 7 -1.7777 -7.1965 -2.9588 17 6 -2.2664 -7.3873 -4.3266 18 6 -3.0617 -8.6920 -4.4067 19 16 -3.6662 -8.9286 -6.1006 20 6 -4.5691 -10.4984 -5.9960 21 6 -3.5901 -11.6293 -5.6742 22 6 -4.3515 -12.9535 -5.5866 23 6 -5.0365 -13.2375 -6.9249 24 6 -6.0155 -12.1066 -7.2467 25 6 -5.2541 -10.7824 -7.3343 26 6 1.1789 -4.7973 -0.2203 27 6 1.8221 -3.6456 0.1249 28 1 -0.4849 0.8400 -0.0004 29 1 -0.1518 -1.4258 -1.5621 30 1 -1.2931 -3.5027 -2.1580 31 1 -0.7280 -6.6270 -0.7285 32 1 -1.9803 -7.8543 -2.2752 33 1 -2.9097 -6.5517 -4.6025 34 1 -1.4198 -7.4357 -5.0115 35 1 -2.4181 -9.5273 -4.1310 36 1 -3.9083 -8.6440 -3.7218 37 1 -5.3207 -10.4337 -5.2093 38 1 -2.8385 -11.6942 -6.4608 39 1 -3.1018 -11.4269 -4.7210 40 1 -5.1034 -12.8890 -4.8001 41 1 -3.6542 -13.7592 -5.3568 42 1 -5.5793 -14.1806 -6.8623 43 1 -4.2847 -13.3020 -7.7114 44 1 -6.7674 -12.0420 -6.4601 45 1 -6.5039 -12.3091 -8.1999 46 1 -5.9515 -9.9767 -7.5641 47 1 -4.5023 -10.8470 -8.1209 48 1 1.5414 -5.7468 0.1447 49 1 2.6934 -3.6821 0.7622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225357263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:37 Heat of formation + Delta-G solvation = 15.227661 kcal Electronic energy + Delta-G solvation = -26120.290976 eV Core-core repulsion = 22491.209405 eV Total energy + Delta-G solvation = -3629.081571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.134 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.19980 -38.79595 -37.48342 -35.36838 -33.32864 -31.58795 -31.33357 -30.90664 -29.53911 -28.81708 -25.26923 -23.86409 -23.52039 -23.15743 -22.74327 -21.19715 -20.57377 -20.31844 -18.16670 -17.36684 -17.35260 -16.79898 -15.94449 -15.82835 -15.41529 -15.19789 -14.98680 -14.83217 -14.74142 -14.23662 -14.05346 -13.89506 -13.32325 -13.07749 -12.90793 -12.74828 -12.72604 -12.26779 -12.09435 -12.05215 -11.91769 -11.77020 -11.67880 -11.26564 -11.15483 -11.12529 -10.94385 -10.90475 -10.68238 -10.59104 -10.55887 -10.08353 -9.85828 -9.55804 -9.23073 -9.04866 -8.02679 -7.71347 -7.45913 -7.02922 -6.80881 -6.28989 -4.35180 1.09461 1.68546 2.12669 2.47962 2.81432 3.08103 3.10003 3.11248 3.15362 3.27627 3.91672 3.96017 4.09156 4.10162 4.33540 4.42253 4.48035 4.58142 4.61297 4.66230 4.85618 4.87383 4.93680 4.96783 5.07916 5.25813 5.47528 5.51076 5.55192 5.56454 5.60650 5.66042 5.66839 5.72194 5.73320 5.88656 6.06098 6.19964 6.35289 6.54114 6.96863 7.02086 7.08901 7.19879 7.28634 7.58517 7.65756 7.92364 8.05400 8.18655 8.26772 8.63212 8.85531 8.96089 10.13363 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.001460 C = 0.001419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.535372 B =19167.560330 C =19724.914099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.450 4.450 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.162 4.162 11 C -0.038 4.038 12 C -0.038 4.038 13 N -0.589 5.589 14 C 0.543 3.457 15 S -0.635 6.635 16 N -0.700 5.700 17 C 0.149 3.851 18 C -0.108 4.108 19 S -0.227 6.227 20 C -0.055 4.055 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.100 4.100 26 C -0.081 4.081 27 C -0.226 4.226 28 H 0.283 0.717 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.389 0.611 32 H 0.390 0.610 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 -24.321 -8.072 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.479 4.479 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.183 4.183 11 C -0.060 4.060 12 C -0.131 4.131 13 N -0.208 5.208 14 C 0.185 3.815 15 S -0.507 6.507 16 N -0.333 5.333 17 C 0.024 3.976 18 C -0.257 4.257 19 S 0.003 5.997 20 C -0.184 4.184 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.138 4.138 26 C -0.101 4.101 27 C -0.246 4.246 28 H 0.094 0.906 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.225 0.775 32 H 0.226 0.774 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.991 -22.602 -9.845 27.415 hybrid contribution -0.156 -1.355 2.462 2.815 sum -12.147 -23.957 -7.383 27.857 Atomic orbital electron populations 1.69846 1.07631 1.29512 1.33738 1.25970 0.94783 1.01513 0.92183 0.86274 0.80413 0.80337 0.79523 1.19059 1.20258 1.18557 1.19646 0.97835 0.91209 1.39235 0.90185 1.17725 0.91045 0.91961 0.87617 1.20878 0.99432 0.96768 1.01208 1.20507 0.99109 0.90750 0.95625 1.16894 1.00411 0.82898 1.12915 1.41979 1.53089 1.18878 1.06850 1.22331 0.82895 0.87657 0.88659 1.93341 1.75194 1.43034 1.39148 1.44703 1.53610 1.22343 1.12685 1.21145 0.99193 0.95367 0.81862 1.23554 1.02987 1.01487 0.97673 1.87096 1.69309 1.29631 1.13661 1.23239 0.99173 0.93842 1.02110 1.21889 0.97590 0.93653 1.02323 1.21561 0.99505 0.96843 0.97763 1.21567 0.98692 0.98217 0.97485 1.21537 0.97832 0.93952 1.02018 1.21347 0.99642 0.97957 0.94891 1.19963 0.93734 0.97072 0.99378 1.20470 1.03787 0.92558 1.07810 0.90635 0.86138 0.87136 0.77519 0.77449 0.88910 0.88937 0.89521 0.89596 0.89552 0.90479 0.91976 0.91978 0.91579 0.91822 0.91688 0.91806 0.91312 0.90828 0.90835 0.89505 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.10 10.94 55.55 0.61 -19.50 16 2 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.82 9.04 -37.86 -0.34 -12.17 16 8 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 9 C 0.12 3.18 5.57 -106.80 -0.59 2.58 16 10 C -0.16 -4.33 8.63 -39.26 -0.34 -4.66 16 11 C -0.04 -0.94 7.76 -39.78 -0.31 -1.25 16 12 C -0.04 -0.83 5.94 -83.59 -0.50 -1.33 16 13 N -0.59 -9.95 5.29 -11.28 -0.06 -10.01 16 14 C 0.54 9.24 7.73 -86.91 -0.67 8.56 16 15 S -0.64 -14.15 24.96 -107.50 -2.68 -16.83 16 16 N -0.70 -8.22 5.56 -62.03 -0.34 -8.57 16 17 C 0.15 1.69 5.14 -4.04 -0.02 1.67 16 18 C -0.11 -0.85 5.75 37.16 0.21 -0.64 16 19 S -0.23 -2.04 21.15 -107.50 -2.27 -4.31 16 20 C -0.05 -0.35 2.65 -26.73 -0.07 -0.42 16 21 C -0.12 -0.66 5.11 -26.73 -0.14 -0.80 16 22 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 23 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 24 C -0.11 -0.52 5.92 -26.73 -0.16 -0.68 16 25 C -0.10 -0.59 5.21 -26.73 -0.14 -0.73 16 26 C -0.08 -1.75 9.90 -39.79 -0.39 -2.14 16 27 C -0.23 -5.42 9.74 -39.26 -0.38 -5.80 16 28 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 29 H 0.12 3.37 6.18 -52.48 -0.32 3.04 16 30 H 0.11 2.75 6.16 -47.13 -0.29 2.46 16 31 H 0.39 4.95 8.84 -40.82 -0.36 4.59 16 32 H 0.39 3.17 8.49 -40.82 -0.35 2.82 16 33 H 0.09 1.23 7.99 -51.93 -0.42 0.82 16 34 H 0.09 1.22 7.99 -51.93 -0.41 0.80 16 35 H 0.09 0.58 7.14 -51.92 -0.37 0.21 16 36 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 49 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 411.50 15.07 6.20 6.20 Total: -1.00 -31.06 411.50 -15.76 -46.82 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.93 Total: 10.07 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -4.25 Total: -17.45 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.20 Total: -38.07 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: -16.19 SS G_CDS: -4.96 Total: -21.14 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.06 -15.76 -46.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225357263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.049 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds