Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 C 1.34502 * 125.77824 * 89.99785 * 4 3 2 6 6 C 1.41436 * 106.85843 * 179.97438 * 5 4 3 7 7 Br 1.89097 * 126.58954 * 179.97438 * 6 5 4 8 8 C 1.34678 * 106.81703 * 0.02562 * 6 5 4 9 9 Br 1.89097 * 125.80068 * 180.02562 * 8 6 5 10 10 O 1.34346 * 125.76695 * 269.69203 * 4 3 2 11 11 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 12 12 O 1.21682 * 119.99954 * 179.97438 * 11 2 1 13 13 C 1.46368 * 119.99916 * 359.72749 * 11 2 1 14 14 H 1.07998 * 120.00437 * 359.97438 * 13 11 2 15 15 C 1.40055 * 119.99853 * 179.97438 * 13 11 2 16 16 N 1.30662 * 119.99894 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99877 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47200 * 59.99901 * 17 15 13 19 19 H 1.48497 * 109.47049 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47156 * 299.99916 * 17 15 13 21 21 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 22 22 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 23 23 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 24 24 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 25 25 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 26 26 H 1.08005 * 126.56525 * 359.97438 * 5 4 3 27 27 H 0.97000 * 120.00244 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6346 2.4765 -2.1621 6 6 2.2550 2.6340 -3.4233 7 35 1.5871 3.6191 -4.8928 8 6 3.4122 1.9466 -3.3769 9 35 4.6675 1.7976 -4.7833 10 8 3.5262 1.3903 -2.1592 11 6 2.1389 -1.1673 -0.0005 12 8 3.3557 -1.1673 -0.0010 13 6 1.4071 -2.4348 0.0049 14 1 0.3271 -2.4349 0.0098 15 6 2.1073 -3.6477 0.0039 16 7 3.4139 -3.6477 -0.0025 17 14 1.1733 -5.2655 0.0115 18 1 0.3136 -5.3465 -1.1966 19 1 2.1383 -6.3942 0.0096 20 1 0.3255 -5.3418 1.2284 21 1 -0.3634 -0.0001 1.0276 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8901 -0.5138 24 1 1.6084 2.0283 0.5139 25 1 3.1499 1.1383 0.5139 26 1 0.6886 2.8961 -1.8533 27 1 3.8990 -4.4877 -0.0029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225397004.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -5.754896 kcal Electronic energy + Delta-G solvation = -16828.907173 eV Core-core repulsion = 13681.779892 eV Total energy + Delta-G solvation = -3147.127282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 364.905 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.56145 -37.79083 -34.29632 -33.64590 -32.52651 -32.06611 -30.76339 -29.47460 -26.73716 -25.95875 -24.23202 -21.70359 -20.51108 -19.32147 -17.04611 -16.59814 -16.25956 -15.64780 -14.78343 -14.51476 -14.25048 -13.51159 -13.30649 -12.88767 -12.52817 -12.35743 -11.77628 -11.63164 -11.52526 -11.44184 -11.19923 -11.04442 -10.97586 -10.66718 -10.34170 -10.25613 -10.24819 -9.44302 -8.91599 -8.41261 -7.68906 -7.50920 -6.26734 -4.73428 0.87210 1.44522 1.52043 2.34245 3.11588 3.17065 3.18565 3.44095 4.03355 4.46516 4.49225 4.73932 5.27403 5.36938 5.55444 5.61928 5.73260 5.88936 5.97905 6.33067 6.34860 6.45097 7.00090 7.37484 7.41025 7.96271 8.19989 8.94125 9.24855 10.46698 10.65919 Molecular weight = 364.90amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.003743 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.333009 B = 7478.828474 C = 8268.126750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.642 5.642 3 C 0.193 3.807 4 C 0.041 3.959 5 C -0.198 4.198 6 C -0.134 4.134 7 Br -0.007 7.007 8 C -0.001 4.001 9 Br 0.058 6.942 10 O -0.126 6.126 11 C 0.552 3.448 12 O -0.567 6.567 13 C -0.541 4.541 14 H 0.073 0.927 15 C 0.087 3.913 16 N -0.763 5.763 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.267 1.267 21 H 0.038 0.962 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.161 0.839 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 14.754 -9.074 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.380 5.380 3 C 0.068 3.932 4 C -0.015 4.015 5 C -0.220 4.220 6 C -0.219 4.219 7 Br 0.077 6.923 8 C -0.134 4.134 9 Br 0.142 6.858 10 O -0.020 6.020 11 C 0.358 3.642 12 O -0.448 6.448 13 C -0.577 4.577 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.392 5.392 17 Si 0.732 3.268 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.192 1.192 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.179 0.821 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.035 14.728 -10.008 17.922 hybrid contribution -0.811 -0.902 0.381 1.271 sum -2.846 13.826 -9.627 17.086 Atomic orbital electron populations 1.21477 0.81484 1.01523 1.00017 1.48249 1.05521 1.04318 1.79912 1.19655 0.99970 0.88445 0.85151 1.23988 0.84861 0.96002 0.96651 1.21354 1.02794 1.06062 0.91750 1.21934 0.97268 1.06111 0.96546 1.96614 1.86435 1.70871 1.38357 1.23755 0.97654 1.03718 0.88250 1.96816 1.55841 1.97804 1.35310 1.84367 1.40264 1.57712 1.19673 1.18382 0.87122 0.82130 0.76522 1.90628 1.13852 1.85793 1.54569 1.20940 0.93706 0.88963 1.54080 0.90853 1.25746 0.94651 1.00386 0.92584 1.69996 1.07090 1.27613 1.34480 0.86424 0.79866 0.80948 0.79526 1.19206 1.20480 1.19157 0.94385 0.93840 0.90705 0.88411 0.88483 0.82113 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 10.14 59.85 0.61 2.30 15 2 N -0.64 -13.79 2.86 -184.64 -0.53 -14.32 15 3 C 0.19 3.49 5.93 -5.20 -0.03 3.46 15 4 C 0.04 0.74 6.90 -35.63 -0.25 0.50 15 5 C -0.20 -3.06 10.80 -39.69 -0.43 -3.49 15 6 C -0.13 -2.13 6.61 -39.63 -0.26 -2.39 15 7 Br -0.01 -0.09 33.78 -68.01 -2.30 -2.39 15 8 C 0.00 -0.02 7.81 29.47 0.23 0.21 15 9 Br 0.06 0.86 33.77 -68.01 -2.30 -1.44 15 10 O -0.13 -2.59 10.66 5.44 0.06 -2.53 15 11 C 0.55 15.22 7.61 -12.99 -0.10 15.12 15 12 O -0.57 -17.85 14.60 5.20 0.08 -17.77 15 13 C -0.54 -14.79 8.74 -35.63 -0.31 -15.10 15 14 H 0.07 1.82 6.00 -52.49 -0.32 1.50 15 15 C 0.09 2.37 5.50 -17.37 -0.10 2.28 15 16 N -0.76 -22.54 11.83 55.55 0.66 -21.88 15 17 Si 0.91 19.76 29.56 -169.99 -5.02 14.73 15 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.04 0.60 8.07 -51.93 -0.42 0.18 15 23 H 0.07 1.36 6.10 -51.92 -0.32 1.04 15 24 H 0.10 1.31 8.07 -51.93 -0.42 0.89 15 25 H 0.10 1.93 7.42 -51.93 -0.39 1.55 15 26 H 0.16 2.01 8.06 -52.48 -0.42 1.59 15 27 H 0.27 7.27 8.29 -40.82 -0.34 6.93 15 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -33.10 288.58 -7.48 -40.58 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -1.84 Total: -2.21 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.64 Total: 2.88 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.13 Total: -36.20 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.13 Total: -20.30 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 35 Polarization: 0.77 SS G_CDS: -4.59 Total: -3.83 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.10 -7.48 -40.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225397004.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.825 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds