Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35892 * 116.99775 * 2 1 4 4 C 1.38815 * 120.01995 * 0.02562 * 3 2 1 5 5 C 1.38170 * 120.09283 * 179.97438 * 4 3 2 6 6 C 1.38160 * 120.13150 * 359.70633 * 5 4 3 7 7 C 1.38928 * 120.02970 * 0.54920 * 6 5 4 8 8 N 1.39670 * 120.04618 * 179.74800 * 7 6 5 9 9 C 1.46504 * 120.00049 * 300.74089 * 8 7 6 10 10 C 1.50704 * 109.46992 * 274.08234 * 9 8 7 11 11 H 1.07993 * 119.99635 * 245.43286 * 10 9 8 12 12 C 1.37881 * 120.00008 * 65.43520 * 10 9 8 13 13 N 1.31509 * 120.00211 * 8.80658 * 12 10 9 14 14 Si 1.86797 * 119.99574 * 188.81023 * 12 10 9 15 15 H 1.48501 * 109.47225 * 89.99862 * 14 12 10 16 16 H 1.48506 * 109.46904 * 209.99399 * 14 12 10 17 17 H 1.48496 * 109.47207 * 329.99589 * 14 12 10 18 18 S 1.65600 * 120.00139 * 120.73809 * 8 7 6 19 19 O 1.42099 * 106.39842 * 27.89853 * 18 8 7 20 20 O 1.42105 * 106.40331 * 160.81409 * 18 8 7 21 21 C 1.76197 * 107.22062 * 274.35737 * 18 8 7 22 22 C 1.38269 * 119.98579 * 274.76067 * 21 18 8 23 23 C 1.38225 * 120.04801 * 179.72881 * 22 21 18 24 24 C 1.38223 * 120.02684 * 0.53698 * 23 22 21 25 25 C 1.38434 * 119.97056 * 359.72875 * 24 23 22 26 26 F 1.35103 * 120.02272 * 180.02562 * 25 24 23 27 27 C 1.38176 * 119.98550 * 95.02471 * 21 18 8 28 28 C 1.38570 * 120.02001 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47592 * 59.99985 * 1 2 3 30 30 H 1.09002 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46608 * 299.99242 * 1 2 3 32 32 H 1.07999 * 119.95398 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.93782 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.98390 * 180.27246 * 6 5 4 35 35 H 1.08993 * 109.47292 * 154.08062 * 9 8 7 36 36 H 1.09004 * 109.46677 * 34.07675 * 9 8 7 37 37 H 0.97000 * 120.00242 * 174.95094 * 13 12 10 38 38 H 1.08001 * 119.97318 * 359.96776 * 22 21 18 39 39 H 1.08005 * 119.98679 * 180.26882 * 23 22 21 40 40 H 1.07995 * 120.01212 * 179.75681 * 24 23 22 41 41 H 1.07992 * 120.01445 * 359.97438 * 27 21 18 42 42 H 1.08010 * 120.05794 * 0.04558 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9159 3.6072 0.0011 6 6 3.2954 3.6845 0.0072 7 6 4.0568 2.5225 0.0013 8 7 5.4514 2.6003 0.0022 9 6 6.1470 3.2943 -1.0844 10 6 6.3647 2.3411 -2.2312 11 1 7.3672 2.0526 -2.5106 12 6 5.2840 1.8374 -2.9236 13 7 4.0795 2.3164 -2.7017 14 14 5.5308 0.4744 -4.1768 15 1 5.4001 -0.8442 -3.5064 16 1 4.5043 0.5911 -5.2437 17 1 6.8840 0.5926 -4.7768 18 16 6.3185 1.9080 1.2315 19 8 5.5345 0.8264 1.7159 20 8 7.6453 1.7505 0.7475 21 6 6.4023 3.0864 2.5387 22 6 7.3900 4.0540 2.5346 23 6 7.4536 4.9826 3.5565 24 6 6.5363 4.9380 4.5896 25 6 5.5504 3.9663 4.5975 26 9 4.6530 3.9220 5.6065 27 6 5.4843 3.0399 3.5703 28 6 3.4297 1.2839 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 0.8901 32 1 0.2118 2.3182 0.0005 33 1 1.3255 4.5116 0.0011 34 1 3.7819 4.6486 0.0121 35 1 7.1101 3.6573 -0.7258 36 1 5.5438 4.1371 -1.4220 37 1 3.3308 2.0147 -3.2396 38 1 8.1100 4.0867 1.7302 39 1 8.2228 5.7407 3.5500 40 1 6.5886 5.6612 5.3899 41 1 4.7153 2.2816 3.5753 42 1 4.0193 0.3789 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225492636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -85.441613 kcal Electronic energy + Delta-G solvation = -31843.388546 eV Core-core repulsion = 27410.176695 eV Total energy + Delta-G solvation = -4433.211851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -48.95534 -39.42763 -38.90171 -37.40072 -36.56224 -35.13920 -34.72845 -32.34669 -31.41423 -30.55312 -30.04101 -28.81407 -27.04443 -26.35601 -23.50952 -22.96360 -22.73837 -21.97740 -20.90993 -19.01172 -18.19534 -17.34264 -16.88230 -16.48835 -16.25697 -15.93577 -15.72598 -15.63993 -15.40090 -15.22439 -15.13638 -14.95574 -14.66078 -14.02162 -13.83918 -13.35395 -13.23573 -12.83865 -12.70173 -12.54389 -12.26124 -12.17902 -11.88083 -11.81968 -11.74941 -11.41318 -11.32498 -11.24098 -11.02490 -10.95096 -10.79797 -10.55174 -10.46543 -10.23468 -9.95254 -9.62426 -9.49639 -8.87907 -8.66406 -8.62947 -7.54145 -7.25012 -6.20715 -4.25847 0.60200 0.98423 1.07152 2.23736 2.33783 3.20849 3.27167 3.34710 3.37126 3.67809 3.90934 4.10762 4.31667 4.40313 4.54662 4.59532 4.74142 4.97506 5.09402 5.17285 5.31516 5.33112 5.43856 5.44941 5.57006 5.61372 5.74316 5.85139 5.90290 5.98857 6.05162 6.08438 6.21682 6.23477 6.37683 6.72259 6.75198 6.98006 7.05535 7.13409 7.20901 7.35149 7.51997 7.73369 7.96966 8.05245 8.17623 8.77314 9.36760 10.79385 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.009470 B = 0.005042 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.963065 B = 5551.635823 C = 7330.924760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.322 6.322 3 C 0.128 3.872 4 C -0.225 4.225 5 C -0.077 4.077 6 C -0.141 4.141 7 C 0.255 3.745 8 N -0.920 5.920 9 C 0.235 3.765 10 C -0.524 4.524 11 H 0.067 0.933 12 C 0.079 3.921 13 N -0.836 5.836 14 Si 0.886 3.114 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.271 1.271 18 S 2.653 3.347 19 O -0.964 6.964 20 O -0.947 6.947 21 C -0.643 4.643 22 C -0.031 4.031 23 C -0.114 4.114 24 C -0.110 4.110 25 C 0.075 3.925 26 F -0.138 7.138 27 C -0.054 4.054 28 C -0.124 4.124 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.268 0.732 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.151 0.849 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 5.716 10.120 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.236 6.236 3 C 0.083 3.917 4 C -0.245 4.245 5 C -0.096 4.096 6 C -0.163 4.163 7 C 0.160 3.840 8 N -0.753 5.753 9 C 0.118 3.882 10 C -0.567 4.567 11 H 0.086 0.914 12 C -0.131 4.131 13 N -0.470 5.470 14 Si 0.713 3.287 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.196 1.196 18 S 2.745 3.255 19 O -0.954 6.954 20 O -0.937 6.937 21 C -0.725 4.725 22 C -0.050 4.050 23 C -0.133 4.133 24 C -0.129 4.129 25 C 0.055 3.945 26 F -0.117 7.117 27 C -0.073 4.073 28 C -0.146 4.146 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.169 0.831 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.438 4.703 10.248 11.536 hybrid contribution -0.619 0.040 -0.307 0.692 sum -3.057 4.743 9.941 11.431 Atomic orbital electron populations 1.22897 0.79679 1.02865 1.00841 1.86051 1.20293 1.27821 1.89426 1.18620 0.91790 0.83454 0.97883 1.20865 0.98663 0.92564 1.12425 1.20448 0.94071 0.96113 0.98983 1.20804 0.93311 0.97374 1.04858 1.16608 0.82233 0.91673 0.93535 1.56914 1.11892 1.72818 1.33680 1.19369 0.91133 0.93565 0.84113 1.21597 0.93520 1.28088 1.13459 0.91445 1.25068 0.95136 0.96298 0.96551 1.69927 0.99453 1.40513 1.37142 0.86679 0.78203 0.82978 0.80795 1.20110 1.21044 1.19564 1.03899 0.74244 0.74579 0.72792 1.93529 1.70378 1.49997 1.81504 1.93545 1.36547 1.84774 1.78864 1.31679 1.03505 1.19071 1.18263 1.21056 0.94924 0.91137 0.97906 1.21155 0.98988 0.99380 0.93765 1.21370 0.94187 0.97584 0.99760 1.17734 0.90740 0.98509 0.87553 1.91508 1.65974 1.96117 1.58110 1.20939 0.97751 0.97190 0.91460 1.20362 0.91237 0.98085 1.04934 0.93103 0.89165 0.93253 0.86919 0.87021 0.86896 0.94170 0.92741 0.92195 0.83586 0.84210 0.84338 0.83095 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.32 -6.10 10.49 -19.40 -0.20 -6.30 16 3 C 0.13 2.59 6.68 -39.25 -0.26 2.33 16 4 C -0.23 -3.99 9.04 -39.39 -0.36 -4.35 16 5 C -0.08 -1.35 10.03 -39.64 -0.40 -1.75 16 6 C -0.14 -2.74 9.24 -39.35 -0.36 -3.10 16 7 C 0.26 5.52 3.19 -83.81 -0.27 5.25 16 8 N -0.92 -19.89 2.82 -59.82 -0.17 -20.06 16 9 C 0.24 5.29 5.31 -5.19 -0.03 5.27 16 10 C -0.52 -13.39 9.41 -34.44 -0.32 -13.72 16 11 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 12 C 0.08 2.02 5.29 -17.82 -0.09 1.93 16 13 N -0.84 -21.24 10.18 55.43 0.56 -20.67 16 14 Si 0.89 20.60 29.55 -169.99 -5.02 15.57 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 S 2.65 54.50 5.61 -107.50 -0.60 53.90 16 19 O -0.96 -21.48 14.55 -57.17 -0.83 -22.31 16 20 O -0.95 -21.21 16.25 -57.17 -0.93 -22.14 16 21 C -0.64 -10.71 5.97 -39.59 -0.24 -10.95 16 22 C -0.03 -0.44 9.52 -39.57 -0.38 -0.82 16 23 C -0.11 -1.29 10.04 -39.59 -0.40 -1.68 16 24 C -0.11 -1.26 10.03 -39.51 -0.40 -1.66 16 25 C 0.07 1.04 7.30 -39.42 -0.29 0.75 16 26 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 27 C -0.05 -0.85 9.51 -39.51 -0.38 -1.23 16 28 C -0.12 -2.82 7.87 -39.24 -0.31 -3.13 16 29 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 32 H 0.11 1.65 6.29 -52.49 -0.33 1.32 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 2.02 7.90 -52.49 -0.41 1.61 16 35 H 0.04 0.82 7.52 -51.93 -0.39 0.42 16 36 H 0.05 1.24 7.45 -51.93 -0.39 0.85 16 37 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.15 1.91 7.73 -52.49 -0.41 1.51 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.15 2.40 7.51 -52.49 -0.39 2.00 16 42 H 0.13 3.12 7.10 -52.48 -0.37 2.75 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -30.35 371.55 -9.76 -40.11 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.73 Total: 3.62 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -3.48 Total: -25.42 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.40 Total: -40.73 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.96 Total: -50.76 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.60 Total: 53.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.35 -9.76 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225492636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.331 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds