Wall clock time and date at job start Tue Mar 31 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99770 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.39679 * 120.00078 * 179.97438 * 13 12 10 15 15 C 1.38936 * 120.06698 * 359.72170 * 14 13 12 16 16 C 1.38091 * 119.94602 * 179.77127 * 15 14 13 17 17 C 1.38294 * 120.08118 * 0.50316 * 16 15 14 18 18 C 1.50697 * 119.92959 * 179.72596 * 17 16 15 19 19 F 1.39904 * 109.47340 * 0.02562 * 18 17 16 20 20 F 1.39898 * 109.47302 * 120.02329 * 18 17 16 21 21 F 1.39903 * 109.46978 * 240.02404 * 18 17 16 22 22 C 1.38351 * 120.13900 * 359.75124 * 17 16 15 23 23 Br 1.89097 * 119.97291 * 179.97438 * 22 17 16 24 24 C 1.38214 * 120.05692 * 359.97438 * 22 17 16 25 25 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 28 28 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 29 29 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 30 30 H 1.08005 * 120.03000 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.95763 * 180.23089 * 16 15 14 32 32 H 1.07998 * 120.04593 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0490 -3.7517 0.0098 14 6 7.4222 -4.0070 0.0159 15 6 8.3264 -2.9521 0.0123 16 6 9.6834 -3.2073 0.0230 17 6 10.1435 -4.5115 0.0269 18 6 11.6252 -4.7861 0.0324 19 9 12.3242 -3.5742 0.0333 20 9 11.9596 -5.5180 1.1769 21 9 11.9675 -5.5211 -1.1077 22 6 9.2462 -5.5646 0.0252 23 35 9.8804 -7.3461 0.0298 24 6 7.8867 -5.3157 0.0202 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3633 0.0004 27 1 5.9281 -1.8579 -0.8832 28 1 5.9199 -1.8556 0.8967 29 1 5.4187 -4.4891 0.0083 30 1 7.9681 -1.9332 0.0052 31 1 10.3864 -2.3875 0.0240 32 1 7.1864 -6.1379 0.0193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225534650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:06 Heat of formation + Delta-G solvation = -145.990849 kcal Electronic energy + Delta-G solvation = -23632.324344 eV Core-core repulsion = 19224.526953 eV Total energy + Delta-G solvation = -4407.797391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 365.993 amu Computer time = 4.55 seconds Orbital eigenvalues (eV) -50.22796 -47.77319 -47.64172 -40.01079 -38.68431 -35.79828 -34.22285 -32.52885 -31.96742 -31.18291 -29.65156 -27.75776 -25.30711 -24.31916 -23.03010 -21.49138 -19.76429 -18.89883 -18.65003 -18.54322 -18.33217 -17.53597 -16.14205 -15.64601 -15.23143 -15.13591 -14.85732 -14.64419 -14.60750 -14.24184 -14.14437 -14.00111 -13.84019 -13.70709 -13.69386 -13.46468 -13.29939 -12.70515 -12.65750 -12.28570 -11.88806 -11.44603 -11.40745 -11.23395 -10.76396 -10.50688 -10.40656 -10.17729 -9.82660 -9.14114 -8.93949 -8.43768 -7.82126 -6.51923 -4.05511 0.71496 0.93721 1.19424 2.58333 2.87226 2.92536 3.02318 3.14631 3.20970 3.39719 3.65789 3.90444 3.92047 4.32197 4.33545 4.49076 4.79982 4.97034 5.00698 5.05730 5.24764 5.42898 5.49889 5.52295 5.57434 5.85261 5.89894 6.18101 6.94569 7.32797 7.55230 7.88881 8.31450 8.69685 9.16418 9.48386 10.60059 Molecular weight = 365.99amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.002259 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.763304 B =12393.591100 C =13493.541082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.881 3.119 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.313 4.313 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.576 6.576 12 C 0.103 3.897 13 N -0.708 5.708 14 C 0.265 3.735 15 C -0.195 4.195 16 C -0.013 4.013 17 C -0.238 4.238 18 C 0.512 3.488 19 F -0.180 7.180 20 F -0.174 7.174 21 F -0.174 7.174 22 C 0.006 3.994 23 Br -0.034 7.034 24 C -0.173 4.173 25 H 0.277 0.723 26 H 0.374 0.626 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.418 0.582 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.068 -7.512 0.043 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.159 4.159 3 Si 0.707 3.293 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.441 4.441 8 H 0.139 0.861 9 N -0.211 5.211 10 C 0.220 3.780 11 O -0.460 6.460 12 C -0.025 4.025 13 N -0.335 5.335 14 C 0.154 3.846 15 C -0.219 4.219 16 C -0.033 4.033 17 C -0.244 4.244 18 C 0.458 3.542 19 F -0.161 7.161 20 F -0.155 7.155 21 F -0.155 7.155 22 C -0.075 4.075 23 Br 0.052 6.948 24 C -0.198 4.198 25 H 0.088 0.912 26 H 0.207 0.793 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.258 0.742 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.560 -8.559 0.044 25.066 hybrid contribution 0.335 1.520 0.017 1.557 sum 23.894 -7.039 0.062 24.910 Atomic orbital electron populations 1.69615 1.05757 1.27974 1.47572 1.25083 0.95546 0.98226 0.97001 0.86657 0.79826 0.83735 0.79128 1.19337 1.19877 1.19318 1.19440 0.78865 0.96867 1.48967 0.86060 1.42114 1.07771 1.06018 1.65165 1.19499 0.87812 0.84993 0.85650 1.90567 1.68973 1.30895 1.55585 1.21128 0.94905 0.83799 1.02650 1.44717 1.02881 1.08561 1.77322 1.17914 0.84529 0.92850 0.89339 1.20779 0.91963 0.98949 1.10170 1.20692 0.95798 0.94390 0.92407 1.19401 0.90448 0.95062 1.19534 1.18110 0.87944 0.74029 0.74143 1.93144 1.81418 1.45254 1.96302 1.93225 1.93692 1.77856 1.50747 1.93226 1.93520 1.77695 1.51074 1.21114 0.94604 0.90518 1.01297 1.96802 1.88010 1.12666 1.97276 1.20469 0.93360 0.96081 1.09872 0.91234 0.79291 0.89832 0.89833 0.74214 0.84227 0.83895 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.04 13.96 55.50 0.77 -23.26 16 2 C 0.05 1.18 5.50 -17.47 -0.10 1.09 16 3 Si 0.88 17.82 27.74 -169.99 -4.71 13.11 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -4.82 6.52 56.52 0.37 -4.46 16 7 C -0.31 -8.22 10.16 -14.93 -0.15 -8.37 16 8 H 0.12 3.68 7.39 -52.49 -0.39 3.29 16 9 N -0.57 -12.25 5.09 -10.96 -0.06 -12.31 16 10 C 0.43 8.66 7.85 -10.98 -0.09 8.58 16 11 O -0.58 -13.81 15.24 5.55 0.08 -13.73 16 12 C 0.10 1.41 5.39 -5.20 -0.03 1.38 16 13 N -0.71 -9.36 5.70 -59.82 -0.34 -9.70 16 14 C 0.26 3.07 6.65 -83.79 -0.56 2.52 16 15 C -0.20 -1.97 9.31 -39.38 -0.37 -2.33 16 16 C -0.01 -0.13 9.42 -39.61 -0.37 -0.50 16 17 C -0.24 -2.64 5.38 -104.56 -0.56 -3.21 16 18 C 0.51 5.69 2.83 36.00 0.10 5.79 16 19 F -0.18 -1.88 15.97 2.25 0.04 -1.85 16 20 F -0.17 -2.02 16.14 2.25 0.04 -1.98 16 21 F -0.17 -2.02 16.14 2.25 0.04 -1.98 16 22 C 0.01 0.07 6.16 -39.55 -0.24 -0.18 16 23 Br -0.03 -0.37 30.82 -68.01 -2.10 -2.46 16 24 C -0.17 -1.96 9.63 -39.36 -0.38 -2.34 16 25 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.37 6.83 5.76 -40.82 -0.24 6.60 16 27 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 28 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 29 H 0.42 6.05 7.45 -40.82 -0.30 5.74 16 30 H 0.14 1.15 6.73 -52.48 -0.35 0.80 16 31 H 0.14 1.08 7.15 -52.49 -0.38 0.71 16 32 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -29.30 312.57 -6.34 -35.64 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -2.07 Total: 11.39 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.74 Total: 2.43 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.38 Total: -45.27 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -4.71 Total: 13.11 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.10 Total: -2.46 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.30 -6.34 -35.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225534650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.346 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.55 seconds