Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99770 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.39679 * 120.00078 * 179.97438 * 13 12 10 15 15 C 1.38936 * 120.06698 * 359.72170 * 14 13 12 16 16 C 1.38091 * 119.94602 * 179.77127 * 15 14 13 17 17 C 1.38294 * 120.08118 * 0.50316 * 16 15 14 18 18 C 1.50697 * 119.92959 * 179.72596 * 17 16 15 19 19 F 1.39904 * 109.47340 * 0.02562 * 18 17 16 20 20 F 1.39898 * 109.47302 * 120.02329 * 18 17 16 21 21 F 1.39903 * 109.46978 * 240.02404 * 18 17 16 22 22 C 1.38351 * 120.13900 * 359.75124 * 17 16 15 23 23 Br 1.89097 * 119.97291 * 179.97438 * 22 17 16 24 24 C 1.38214 * 120.05692 * 359.97438 * 22 17 16 25 25 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 28 28 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 29 29 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 30 30 H 1.08005 * 120.03000 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.95763 * 180.23089 * 16 15 14 32 32 H 1.07998 * 120.04593 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0490 -3.7517 0.0098 14 6 7.4222 -4.0070 0.0159 15 6 8.3264 -2.9521 0.0123 16 6 9.6834 -3.2073 0.0230 17 6 10.1435 -4.5115 0.0269 18 6 11.6252 -4.7861 0.0324 19 9 12.3242 -3.5742 0.0333 20 9 11.9596 -5.5180 1.1769 21 9 11.9675 -5.5211 -1.1077 22 6 9.2462 -5.5646 0.0252 23 35 9.8804 -7.3461 0.0298 24 6 7.8867 -5.3157 0.0202 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3633 0.0004 27 1 5.9281 -1.8579 -0.8832 28 1 5.9199 -1.8556 0.8967 29 1 5.4187 -4.4891 0.0083 30 1 7.9681 -1.9332 0.0052 31 1 10.3864 -2.3875 0.0240 32 1 7.1864 -6.1379 0.0193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225534650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = -165.481058 kcal Electronic energy + Delta-G solvation = -23633.169503 eV Core-core repulsion = 19224.526953 eV Total energy + Delta-G solvation = -4408.642549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 365.993 amu Computer time = 6.18 seconds Orbital eigenvalues (eV) -51.08787 -48.61800 -48.52525 -40.98559 -40.17587 -36.88221 -35.98091 -33.84421 -33.34371 -32.16991 -30.47390 -29.00360 -26.59338 -25.56817 -23.91245 -22.41917 -21.38886 -20.47709 -19.48081 -19.41033 -19.34016 -18.66740 -17.31689 -17.05977 -16.56560 -16.47341 -15.79374 -15.58222 -15.52956 -15.35430 -15.00622 -14.87379 -14.84793 -14.80237 -14.70562 -14.60137 -14.35372 -14.21352 -13.92181 -13.84886 -12.98000 -12.72855 -12.43800 -12.23709 -12.14445 -11.98782 -11.56489 -11.35575 -11.26697 -10.64857 -10.32009 -9.95224 -8.72822 -8.44671 -6.07809 -0.12368 0.13852 0.35540 1.31751 1.36507 1.46681 1.72910 1.82482 2.10929 2.22782 2.40240 2.78896 2.92108 3.06661 3.11994 3.47461 3.71649 3.95322 4.02495 4.18833 4.25765 4.36109 4.46218 4.64487 4.73221 5.06846 5.09182 5.37963 5.49391 5.86839 6.07204 6.48664 6.52654 6.80331 7.30201 7.82029 8.72156 Molecular weight = 365.99amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.002259 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.763304 B =12393.591100 C =13493.541082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.223 1.223 7 C -0.333 4.333 8 H 0.057 0.943 9 N -0.576 5.576 10 C 0.439 3.561 11 O -0.623 6.623 12 C 0.117 3.883 13 N -0.721 5.721 14 C 0.256 3.744 15 C -0.187 4.187 16 C -0.009 4.009 17 C -0.244 4.244 18 C 0.512 3.488 19 F -0.174 7.174 20 F -0.179 7.179 21 F -0.179 7.179 22 C -0.006 4.006 23 Br -0.036 7.036 24 C -0.179 4.179 25 H 0.281 0.719 26 H 0.395 0.605 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.409 0.591 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.390 -5.074 0.097 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.212 4.212 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.145 1.145 7 C -0.463 4.463 8 H 0.075 0.925 9 N -0.217 5.217 10 C 0.227 3.773 11 O -0.509 6.509 12 C -0.010 4.010 13 N -0.348 5.348 14 C 0.146 3.854 15 C -0.210 4.210 16 C -0.028 4.028 17 C -0.250 4.250 18 C 0.458 3.542 19 F -0.156 7.156 20 F -0.160 7.160 21 F -0.160 7.160 22 C -0.087 4.087 23 Br 0.050 6.950 24 C -0.204 4.204 25 H 0.090 0.910 26 H 0.231 0.769 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.247 0.753 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 26.945 -6.135 0.100 27.635 hybrid contribution -0.661 0.569 -0.005 0.872 sum 26.284 -5.566 0.095 26.867 Atomic orbital electron populations 1.69801 1.08349 1.29511 1.49358 1.26169 0.96447 1.02953 0.95616 0.85385 0.79807 0.76406 0.80088 1.18051 1.20381 1.14539 1.18993 0.81335 0.95030 1.50898 0.92510 1.41893 1.05888 1.07577 1.66326 1.20759 0.90716 0.83655 0.82134 1.90558 1.71089 1.32759 1.56455 1.21153 0.89137 0.84797 1.05953 1.44690 1.03405 1.08007 1.78672 1.18009 0.83896 0.93377 0.90084 1.21084 0.91640 0.99667 1.08585 1.20993 0.96246 0.94352 0.91226 1.19573 0.90221 0.95740 1.19477 1.18141 0.88141 0.74073 0.73841 1.93152 1.81339 1.44817 1.96260 1.93216 1.93751 1.78044 1.51003 1.93217 1.93580 1.77883 1.51328 1.21203 0.94795 0.90720 1.02022 1.96795 1.87976 1.12934 1.97307 1.20536 0.93419 0.96490 1.09931 0.90991 0.76906 0.86250 0.86348 0.75346 0.81523 0.81371 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.51 13.96 21.66 0.30 -53.21 16 2 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 3 Si 0.96 35.22 27.74 68.60 1.90 37.12 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 5 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.22 -6.45 6.52 99.48 0.65 -5.80 16 7 C -0.33 -18.12 10.16 84.04 0.85 -17.26 16 8 H 0.06 3.73 7.39 -2.91 -0.02 3.71 16 9 N -0.58 -23.93 5.09 -306.98 -1.56 -25.49 16 10 C 0.44 17.02 7.85 87.66 0.69 17.71 16 11 O -0.62 -30.64 15.24 -3.07 -0.05 -30.68 16 12 C 0.12 2.73 5.39 85.64 0.46 3.19 16 13 N -0.72 -17.37 5.70 -343.16 -1.96 -19.33 16 14 C 0.26 5.22 6.65 38.21 0.25 5.47 16 15 C -0.19 -2.92 9.31 22.40 0.21 -2.72 16 16 C -0.01 -0.13 9.42 22.25 0.21 0.08 16 17 C -0.24 -4.81 5.38 -19.82 -0.11 -4.91 16 18 C 0.51 10.33 2.83 71.24 0.20 10.53 16 19 F -0.17 -3.18 15.97 44.97 0.72 -2.46 16 20 F -0.18 -3.88 16.14 44.97 0.73 -3.15 16 21 F -0.18 -3.88 16.14 44.97 0.73 -3.15 16 22 C -0.01 -0.14 6.16 22.29 0.14 0.00 16 23 Br -0.04 -0.76 30.82 -20.37 -0.63 -1.39 16 24 C -0.18 -3.80 9.63 22.42 0.22 -3.59 16 25 H 0.28 14.74 8.31 -92.70 -0.77 13.97 16 26 H 0.39 12.92 5.76 -92.71 -0.53 12.38 16 27 H 0.12 2.04 7.94 -2.38 -0.02 2.02 16 28 H 0.12 2.05 7.96 -2.39 -0.02 2.03 16 29 H 0.41 11.60 7.45 -92.71 -0.69 10.91 16 30 H 0.17 1.69 6.73 -2.91 -0.02 1.67 16 31 H 0.17 1.73 7.15 -2.91 -0.02 1.71 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.48 312.57 3.72 -65.76 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.06 Total: 27.66 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 3.59 Total: 8.32 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -3.22 Total: -98.03 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.05 Total: -30.68 kcal Atomic # 9 Polarization: -10.94 SS G_CDS: 2.17 Total: -8.77 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 1.90 Total: 37.12 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -0.63 Total: -1.39 kcal Total: -69.48 3.72 -65.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225534650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.721 kcal (2) G-P(sol) polarization free energy of solvation -69.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.18 seconds