Wall clock time and date at job start Tue Mar 31 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30613 * 122.98452 * 2 1 4 4 C 1.30349 * 117.30675 * 180.02562 * 3 2 1 5 5 C 1.47789 * 124.75045 * 179.97438 * 4 3 2 6 6 C 1.40022 * 120.56171 * 179.97438 * 5 4 3 7 7 C 1.38352 * 118.28399 * 179.97438 * 6 5 4 8 8 C 1.38352 * 119.31390 * 0.02562 * 7 6 5 9 9 N 1.31924 * 121.08254 * 0.02562 * 8 7 6 10 10 C 1.31703 * 121.87527 * 359.68465 * 9 8 7 11 11 S 1.70928 * 110.50391 * 359.72415 * 4 3 2 12 12 C 1.36945 * 122.98706 * 180.02562 * 2 1 3 13 13 C 1.46528 * 126.12134 * 359.96144 * 12 2 1 14 14 O 1.21717 * 120.00221 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99645 * 180.02562 * 13 12 2 16 16 C 1.39086 * 119.99828 * 184.28636 * 15 13 12 17 17 C 1.39528 * 119.83545 * 144.68242 * 16 15 13 18 18 C 1.36349 * 120.16137 * 180.27387 * 17 16 15 19 19 C 1.40891 * 119.83387 * 359.47955 * 18 17 16 20 20 C 1.41134 * 120.15915 * 180.22871 * 19 18 17 21 21 H 1.08002 * 119.99641 * 215.06003 * 20 19 18 22 22 C 1.39896 * 120.00189 * 35.05762 * 20 19 18 23 23 N 1.30874 * 120.00160 * 355.54520 * 22 20 19 24 24 Si 1.86799 * 120.00114 * 175.54317 * 22 20 19 25 25 H 1.48499 * 109.47142 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47181 * 119.99827 * 24 22 20 27 27 H 1.48497 * 109.47421 * 239.99919 * 24 22 20 28 28 C 1.40879 * 119.67820 * 0.53848 * 19 18 17 29 29 C 1.36353 * 119.82941 * 359.71234 * 28 19 18 30 30 H 1.09002 * 109.46804 * 269.95744 * 1 2 3 31 31 H 1.08997 * 109.47108 * 29.96112 * 1 2 3 32 32 H 1.09003 * 109.46896 * 149.96318 * 1 2 3 33 33 H 1.07997 * 120.86160 * 359.96060 * 6 5 4 34 34 H 1.08000 * 120.34432 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.46082 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.71597 * 180.31486 * 10 9 8 37 37 H 0.96998 * 119.99905 * 4.28551 * 15 13 12 38 38 H 1.07993 * 119.91785 * 359.97438 * 17 16 15 39 39 H 1.08001 * 120.08392 * 179.69892 * 18 17 16 40 40 H 0.96999 * 120.00330 * 180.02562 * 23 22 20 41 41 H 1.07999 * 120.08901 * 179.68777 * 28 19 18 42 42 H 1.08003 * 119.91761 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2181 1.0956 0.0000 4 6 3.5152 0.9666 -0.0005 5 6 4.4736 2.0916 -0.0011 6 6 5.8531 1.8517 -0.0011 7 6 6.7078 2.9397 -0.0023 8 6 6.1775 4.2176 -0.0029 9 7 4.8729 4.4136 -0.0018 10 6 4.0189 3.4110 -0.0064 11 16 3.9526 -0.6857 0.0066 12 6 2.2526 -1.1487 -0.0005 13 6 1.7301 -2.5176 -0.0003 14 8 0.5283 -2.7104 -0.0001 15 7 2.5804 -3.5634 -0.0004 16 6 2.0870 -4.8607 -0.0902 17 6 2.8029 -5.8283 -0.7960 18 6 2.3227 -7.1007 -0.8931 19 6 1.1059 -7.4401 -0.2692 20 6 0.6049 -8.7563 -0.3611 21 1 -0.4600 -8.9257 -0.4226 22 6 1.4876 -9.8416 -0.3728 23 7 2.7797 -9.6341 -0.3864 24 14 0.8220 -11.5870 -0.3687 25 1 -0.6625 -11.5507 -0.3531 26 1 1.2864 -12.2967 -1.5877 27 1 1.3129 -12.3012 0.8371 28 6 0.3885 -6.4577 0.4414 29 6 0.8786 -5.1881 0.5255 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8897 -0.5144 33 1 6.2401 0.8434 0.0000 34 1 7.7778 2.7930 -0.0027 35 1 6.8425 5.0686 -0.0042 36 1 2.9577 3.6117 -0.0105 37 1 3.5363 -3.4112 0.0622 38 1 3.7372 -5.5675 -1.2707 39 1 2.8754 -7.8474 -1.4438 40 1 3.3917 -10.3865 -0.3949 41 1 -0.5474 -6.7094 0.9179 42 1 0.3296 -4.4337 1.0695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226094485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:18 Heat of formation + Delta-G solvation = 68.797084 kcal Electronic energy + Delta-G solvation = -27584.845905 eV Core-core repulsion = 23621.384322 eV Total energy + Delta-G solvation = -3963.461583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.094 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.80699 -40.22111 -39.27794 -37.28086 -34.61499 -33.86382 -33.04413 -32.54195 -30.74319 -29.75210 -29.37632 -28.05029 -25.95712 -25.02721 -24.14784 -22.64726 -22.27845 -21.27512 -20.35363 -19.31980 -18.50393 -17.57841 -17.40945 -17.14075 -16.48884 -15.98184 -15.80595 -15.62621 -15.19356 -14.60924 -14.59160 -14.12353 -13.97072 -13.91778 -13.81659 -13.63251 -13.07703 -12.75599 -12.70171 -12.67881 -12.33309 -12.18622 -11.82951 -11.54573 -11.47318 -11.23062 -10.97997 -10.63829 -10.58532 -10.42226 -10.14825 -10.02146 -9.92452 -9.85052 -9.65310 -9.43767 -9.24526 -8.88386 -8.61229 -7.62975 -6.96965 -6.69448 -4.40610 -0.44241 0.70885 0.82665 0.85082 1.27948 2.28960 2.61037 3.02489 3.04439 3.07227 3.12342 3.31244 3.35922 3.43762 3.57404 3.93112 4.00809 4.30171 4.31176 4.46782 4.61475 4.62630 4.80790 4.91782 5.04327 5.24600 5.48958 5.50843 5.58387 5.62942 5.70578 5.78193 6.11146 6.11505 6.25359 6.37171 6.62325 6.80914 6.98783 7.10989 7.20805 7.31777 7.45746 7.56581 7.62351 7.75438 7.99217 8.12001 8.23386 8.48141 8.59530 8.85821 8.91463 10.21908 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.001794 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.578471 B =15604.598041 C =16664.462444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.149 3.851 3 N -0.465 5.465 4 C 0.083 3.917 5 C -0.079 4.079 6 C -0.056 4.056 7 C -0.168 4.168 8 C 0.111 3.889 9 N -0.483 5.483 10 C 0.151 3.849 11 S 0.187 5.813 12 C -0.284 4.284 13 C 0.579 3.421 14 O -0.510 6.510 15 N -0.640 5.640 16 C -0.002 4.002 17 C -0.116 4.116 18 C -0.141 4.141 19 C 0.102 3.898 20 C -0.458 4.458 21 H 0.078 0.922 22 C 0.069 3.931 23 N -0.811 5.811 24 Si 0.916 3.084 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.205 4.205 29 C -0.081 4.081 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.392 0.608 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.278 0.722 41 H 0.098 0.902 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 20.931 0.642 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 N -0.180 5.180 4 C -0.189 4.189 5 C -0.085 4.085 6 C -0.084 4.084 7 C -0.188 4.188 8 C -0.046 4.046 9 N -0.191 5.191 10 C -0.010 4.010 11 S 0.447 5.553 12 C -0.408 4.408 13 C 0.365 3.635 14 O -0.388 6.388 15 N -0.282 5.282 16 C -0.094 4.094 17 C -0.137 4.137 18 C -0.161 4.161 19 C 0.100 3.900 20 C -0.489 4.489 21 H 0.096 0.904 22 C -0.146 4.146 23 N -0.438 5.438 24 Si 0.741 3.259 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.225 4.225 29 C -0.101 4.101 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.187 0.813 37 H 0.226 0.774 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.275 21.445 0.637 23.373 hybrid contribution -0.014 -1.608 0.113 1.612 sum 9.261 19.837 0.749 21.905 Atomic orbital electron populations 1.20678 0.85423 1.04724 1.03902 1.20898 0.98641 0.84375 0.95122 1.66166 1.03390 1.31714 1.16754 1.24899 0.93207 0.96683 1.04127 1.18891 0.91595 0.92462 1.05516 1.21674 0.91531 1.00431 0.94775 1.22079 1.01464 0.93156 1.02119 1.23032 0.91768 0.96739 0.93084 1.67819 1.03822 1.35242 1.12244 1.23098 1.00497 0.86283 0.91146 1.83606 1.06049 1.00513 1.65099 1.26088 0.95403 0.99701 1.19647 1.16600 0.86558 0.81957 0.78425 1.90786 1.14049 1.84115 1.49894 1.42835 1.08756 1.05236 1.71353 1.17211 0.99671 0.82336 1.10217 1.20318 0.99054 0.94266 1.00017 1.21190 0.98937 0.94003 1.01950 1.17763 0.91549 0.92523 0.88207 1.19564 0.94586 0.90430 1.44305 0.90422 1.25896 0.94602 1.01632 0.92449 1.69767 1.02738 1.33302 1.37979 0.86132 0.80216 0.81142 0.78429 1.18517 1.19955 1.19951 1.20820 1.02297 0.93725 1.05661 1.20409 0.95009 0.96163 0.98546 0.89958 0.90727 0.87763 0.84333 0.83793 0.82116 0.81300 0.77430 0.89061 0.84984 0.91126 0.88421 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.71 36.01 0.35 -0.76 16 2 C 0.15 2.06 6.83 -83.58 -0.57 1.49 16 3 N -0.47 -5.98 10.05 -8.20 -0.08 -6.07 16 4 C 0.08 0.93 7.14 -14.28 -0.10 0.82 16 5 C -0.08 -0.75 5.89 -104.83 -0.62 -1.36 16 6 C -0.06 -0.40 9.68 -38.87 -0.38 -0.77 16 7 C -0.17 -0.94 10.10 -39.50 -0.40 -1.34 16 8 C 0.11 0.73 11.17 -17.47 -0.20 0.54 16 9 N -0.48 -4.53 10.35 -12.90 -0.13 -4.66 16 10 C 0.15 1.46 10.84 -17.12 -0.19 1.27 16 11 S 0.19 1.98 21.22 -107.50 -2.28 -0.30 16 12 C -0.28 -4.07 6.51 -36.71 -0.24 -4.31 16 13 C 0.58 10.16 7.60 -12.92 -0.10 10.06 16 14 O -0.51 -10.32 11.73 5.17 0.06 -10.26 16 15 N -0.64 -11.28 5.29 -10.96 -0.06 -11.34 16 16 C 0.00 -0.05 6.30 -83.61 -0.53 -0.58 16 17 C -0.12 -2.59 9.90 -39.78 -0.39 -2.98 16 18 C -0.14 -3.53 8.61 -39.26 -0.34 -3.87 16 19 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 20 C -0.46 -11.98 9.02 -37.86 -0.34 -12.32 16 21 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 22 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 23 N -0.81 -20.46 10.61 55.54 0.59 -19.87 16 24 Si 0.92 18.59 29.56 -169.99 -5.03 13.56 16 25 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 28 C -0.20 -5.06 9.74 -39.26 -0.38 -5.44 16 29 C -0.08 -1.90 8.61 -39.78 -0.34 -2.24 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.50 6.05 -51.93 -0.31 1.19 16 33 H 0.14 0.74 7.34 -52.49 -0.39 0.36 16 34 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.17 1.59 7.80 -52.48 -0.41 1.18 16 37 H 0.39 5.67 8.00 -40.82 -0.33 5.34 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.13 3.42 6.15 -52.49 -0.32 3.10 16 40 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 41 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.11 2.48 6.22 -52.48 -0.33 2.15 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -30.34 374.97 -10.89 -41.23 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.17 Total: 10.14 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -5.45 Total: -18.09 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.32 Total: -41.94 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.28 Total: -0.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.34 -10.89 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226094485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.030 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds