Wall clock time and date at job start Tue Mar 31 2020 07:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31324 * 122.07701 * 2 1 4 4 C 1.30231 * 117.03566 * 180.32778 * 3 2 1 5 5 C 1.47852 * 125.47312 * 179.74938 * 4 3 2 6 6 C 1.39567 * 120.14855 * 179.68458 * 5 4 3 7 7 C 1.37935 * 119.86434 * 179.74334 * 6 5 4 8 8 C 1.38385 * 120.16662 * 0.55364 * 7 6 5 9 9 C 1.38302 * 120.29834 * 359.69102 * 8 7 6 10 10 C 1.38095 * 120.13035 * 0.03083 * 9 8 7 11 11 Br 1.89104 * 120.08421 * 179.97438 * 10 9 8 12 12 S 1.76179 * 109.05338 * 359.71077 * 4 3 2 13 13 C 1.33709 * 122.07589 * 179.77881 * 2 1 3 14 14 C 1.50703 * 125.88820 * 359.97438 * 13 2 1 15 15 H 1.09002 * 109.47152 * 344.71492 * 14 13 2 16 16 C 1.53000 * 109.46912 * 104.71721 * 14 13 2 17 17 N 1.46500 * 109.47155 * 224.71491 * 14 13 2 18 18 C 1.36931 * 119.99971 * 154.99975 * 17 14 13 19 19 H 1.08005 * 120.00425 * 359.97438 * 18 17 14 20 20 C 1.38812 * 120.00390 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99556 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00553 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00050 * 22 20 18 24 24 H 1.48500 * 109.47547 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46942 * 299.99859 * 22 20 18 26 26 H 1.08996 * 109.47154 * 270.22519 * 1 2 3 27 27 H 1.09002 * 109.47019 * 30.21696 * 1 2 3 28 28 H 1.08993 * 109.47592 * 150.21373 * 1 2 3 29 29 H 1.08009 * 120.06349 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.91770 * 180.26882 * 7 6 5 31 31 H 1.08007 * 119.85256 * 179.72307 * 8 7 6 32 32 H 1.07997 * 119.93656 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.46724 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.47194 * 299.99742 * 16 14 13 35 35 H 1.08992 * 109.47399 * 59.99914 * 16 14 13 36 36 H 0.97004 * 120.00223 * 334.99953 * 17 14 13 37 37 H 0.96997 * 119.99679 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2044 1.1128 0.0000 4 6 3.5016 0.9983 -0.0066 5 6 4.4621 2.1224 -0.0131 6 6 5.8350 1.8713 -0.0134 7 6 6.7258 2.9243 -0.0248 8 6 6.2616 4.2280 -0.0245 9 6 4.9026 4.4846 -0.0192 10 6 3.9998 3.4397 -0.0135 11 35 2.1419 3.7922 -0.0055 12 16 3.9282 -0.7110 -0.0055 13 6 2.2170 -1.1330 0.0044 14 6 1.6516 -2.5299 0.0103 15 1 0.5965 -2.4937 0.2815 16 6 1.7994 -3.1458 -1.3824 17 7 2.3786 -3.3468 0.9852 18 6 1.7753 -4.4396 1.5481 19 1 0.7634 -4.6991 1.2738 20 6 2.4639 -5.2134 2.4723 21 7 3.6968 -4.8970 2.8070 22 14 1.6412 -6.7046 3.2397 23 1 1.2677 -7.6677 2.1728 24 1 2.5810 -7.3553 4.1877 25 1 0.4208 -6.2760 3.9692 26 1 -0.3633 0.0040 1.0276 27 1 -0.3633 0.8881 -0.5172 28 1 -0.3634 -0.8918 -0.5105 29 1 6.1991 0.8544 -0.0083 30 1 7.7884 2.7309 -0.0294 31 1 6.9636 5.0487 -0.0290 32 1 4.5467 5.5043 -0.0194 33 1 1.3900 -4.1560 -1.3782 34 1 1.2585 -2.5380 -2.1078 35 1 2.8545 -3.1820 -1.6536 36 1 3.2872 -3.1136 1.2319 37 1 4.1779 -5.4374 3.4530 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252484608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:39 Heat of formation + Delta-G solvation = 85.932537 kcal Electronic energy + Delta-G solvation = -21536.277091 eV Core-core repulsion = 18258.979359 eV Total energy + Delta-G solvation = -3277.297732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 366.010 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -39.83054 -38.94963 -35.79088 -33.10536 -32.28814 -31.83009 -30.27020 -29.19710 -28.57234 -26.82089 -24.86548 -23.92343 -22.74730 -21.65550 -20.89874 -18.69270 -17.67196 -17.35828 -16.47775 -15.63330 -15.21121 -14.87600 -14.60723 -14.42694 -13.71712 -13.65163 -13.44416 -13.32792 -13.18026 -12.71025 -12.38944 -12.17671 -12.07874 -11.76007 -11.52601 -11.41231 -11.05844 -10.89853 -10.84476 -10.79275 -10.60633 -10.39073 -10.17796 -9.81480 -9.56138 -9.04988 -8.88663 -8.79881 -8.64189 -7.85550 -7.10868 -5.85461 -3.15326 0.32111 0.96685 1.54330 1.60690 1.71262 2.10930 3.06996 3.39799 3.44155 3.45082 3.58190 4.01606 4.51606 4.59645 4.67519 4.97457 5.07880 5.16700 5.29100 5.39235 5.41343 5.53436 5.62383 5.73998 5.88330 5.93488 5.94556 6.01547 6.04491 6.13003 6.18027 6.25031 6.48540 6.51131 6.59550 6.66183 6.90595 7.60737 8.03325 8.30946 9.42573 9.94594 10.30307 11.36495 Molecular weight = 366.01amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.003080 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.548654 B = 9088.665387 C =10051.773314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.040 3.960 3 N -0.421 5.421 4 C 0.052 3.948 5 C 0.020 3.980 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.111 4.111 9 C -0.094 4.094 10 C -0.064 4.064 11 Br -0.014 7.014 12 S 0.118 5.882 13 C -0.169 4.169 14 C 0.241 3.759 15 H 0.072 0.928 16 C -0.163 4.163 17 N -0.719 5.719 18 C -0.245 4.245 19 H 0.074 0.926 20 C -0.008 4.008 21 N -0.928 5.928 22 Si 0.910 3.090 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.385 0.615 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.444 20.705 -8.530 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 N -0.135 5.135 4 C -0.222 4.222 5 C 0.015 3.985 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.147 4.147 11 Br 0.073 6.927 12 S 0.376 5.624 13 C -0.292 4.292 14 C 0.128 3.872 15 H 0.089 0.911 16 C -0.223 4.223 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.576 5.576 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.219 0.781 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.334 20.567 -8.438 22.353 hybrid contribution -0.409 -0.953 0.643 1.220 sum 1.926 19.614 -7.795 21.194 Atomic orbital electron populations 1.20316 0.87494 1.02667 1.02762 1.20053 0.98245 0.85923 1.05076 1.67017 1.03729 1.29664 1.13057 1.25430 0.92660 0.95045 1.09044 1.17733 0.91488 0.89025 1.00273 1.21258 0.91018 1.00309 0.99511 1.21147 1.00031 0.92216 0.98690 1.21250 0.94957 0.97158 0.99748 1.21080 0.92710 0.98262 0.99394 1.21954 0.92593 0.94225 1.05977 1.96737 1.04593 1.94371 1.96969 1.84925 1.07676 1.01322 1.68462 1.26544 0.94466 1.01701 1.06456 1.18807 0.95720 0.81984 0.90647 0.91083 1.22494 1.01233 1.01214 0.97393 1.42549 1.15332 1.30002 1.48175 1.19194 0.97841 1.02163 1.18421 0.90822 1.24773 0.96363 0.99648 0.99739 1.69660 1.10518 1.40927 1.36453 0.86232 0.78279 0.82547 0.78903 1.21100 1.21601 1.21114 0.90972 0.91235 0.90764 0.84809 0.84827 0.84975 0.84733 0.91777 0.93957 0.93296 0.78066 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.76 36.00 0.35 -0.69 16 2 C 0.04 0.70 6.69 -84.40 -0.56 0.13 16 3 N -0.42 -7.18 7.27 -7.55 -0.05 -7.23 16 4 C 0.05 0.85 7.29 -14.30 -0.10 0.75 16 5 C 0.02 0.29 5.87 -104.96 -0.62 -0.33 16 6 C -0.10 -1.17 9.61 -39.20 -0.38 -1.55 16 7 C -0.10 -0.93 10.03 -39.64 -0.40 -1.33 16 8 C -0.11 -0.93 10.04 -39.50 -0.40 -1.33 16 9 C -0.09 -0.94 9.78 -39.61 -0.39 -1.33 16 10 C -0.06 -0.83 6.26 -39.12 -0.24 -1.07 16 11 Br -0.01 -0.18 30.48 -68.01 -2.07 -2.25 16 12 S 0.12 2.04 21.64 -107.50 -2.33 -0.28 16 13 C -0.17 -3.14 5.44 -35.89 -0.20 -3.34 16 14 C 0.24 4.83 3.02 -69.08 -0.21 4.62 16 15 H 0.07 1.40 6.65 -51.93 -0.35 1.06 16 16 C -0.16 -2.94 9.47 37.16 0.35 -2.58 16 17 N -0.72 -17.92 5.11 -54.55 -0.28 -18.19 16 18 C -0.25 -6.67 9.93 -15.06 -0.15 -6.82 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.98 6.96 -51.93 -0.36 0.62 16 29 H 0.13 1.49 7.30 -52.48 -0.38 1.11 16 30 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 31 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.38 10.21 7.10 -40.82 -0.29 9.92 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -30.95 346.14 -11.16 -42.11 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.31 Total: 5.78 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -3.03 Total: -15.19 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.39 Total: -52.35 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.33 Total: -0.28 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -2.07 Total: -2.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.95 -11.16 -42.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252484608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.038 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds