Wall clock time and date at job start Tue Mar 31 2020 07:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31324 * 122.07701 * 2 1 4 4 C 1.30231 * 117.03566 * 180.32778 * 3 2 1 5 5 C 1.47852 * 125.47312 * 179.74938 * 4 3 2 6 6 C 1.39567 * 120.14855 * 179.68458 * 5 4 3 7 7 C 1.37935 * 119.86434 * 179.74334 * 6 5 4 8 8 C 1.38385 * 120.16662 * 0.55364 * 7 6 5 9 9 C 1.38302 * 120.29834 * 359.69102 * 8 7 6 10 10 C 1.38095 * 120.13035 * 0.03083 * 9 8 7 11 11 Br 1.89104 * 120.08421 * 179.97438 * 10 9 8 12 12 S 1.76179 * 109.05338 * 359.71077 * 4 3 2 13 13 C 1.33709 * 122.07589 * 179.77881 * 2 1 3 14 14 C 1.50703 * 125.88820 * 359.97438 * 13 2 1 15 15 H 1.09002 * 109.47152 * 344.71492 * 14 13 2 16 16 C 1.53000 * 109.46912 * 104.71721 * 14 13 2 17 17 N 1.46500 * 109.47155 * 224.71491 * 14 13 2 18 18 C 1.36931 * 119.99971 * 154.99975 * 17 14 13 19 19 H 1.08005 * 120.00425 * 359.97438 * 18 17 14 20 20 C 1.38812 * 120.00390 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99556 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00553 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00050 * 22 20 18 24 24 H 1.48500 * 109.47547 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46942 * 299.99859 * 22 20 18 26 26 H 1.08996 * 109.47154 * 270.22519 * 1 2 3 27 27 H 1.09002 * 109.47019 * 30.21696 * 1 2 3 28 28 H 1.08993 * 109.47592 * 150.21373 * 1 2 3 29 29 H 1.08009 * 120.06349 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.91770 * 180.26882 * 7 6 5 31 31 H 1.08007 * 119.85256 * 179.72307 * 8 7 6 32 32 H 1.07997 * 119.93656 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.46724 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.47194 * 299.99742 * 16 14 13 35 35 H 1.08992 * 109.47399 * 59.99914 * 16 14 13 36 36 H 0.97004 * 120.00223 * 334.99953 * 17 14 13 37 37 H 0.96997 * 119.99679 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2044 1.1128 0.0000 4 6 3.5016 0.9983 -0.0066 5 6 4.4621 2.1224 -0.0131 6 6 5.8350 1.8713 -0.0134 7 6 6.7258 2.9243 -0.0248 8 6 6.2616 4.2280 -0.0245 9 6 4.9026 4.4846 -0.0192 10 6 3.9998 3.4397 -0.0135 11 35 2.1419 3.7922 -0.0055 12 16 3.9282 -0.7110 -0.0055 13 6 2.2170 -1.1330 0.0044 14 6 1.6516 -2.5299 0.0103 15 1 0.5965 -2.4937 0.2815 16 6 1.7994 -3.1458 -1.3824 17 7 2.3786 -3.3468 0.9852 18 6 1.7753 -4.4396 1.5481 19 1 0.7634 -4.6991 1.2738 20 6 2.4639 -5.2134 2.4723 21 7 3.6968 -4.8970 2.8070 22 14 1.6412 -6.7046 3.2397 23 1 1.2677 -7.6677 2.1728 24 1 2.5810 -7.3553 4.1877 25 1 0.4208 -6.2760 3.9692 26 1 -0.3633 0.0040 1.0276 27 1 -0.3633 0.8881 -0.5172 28 1 -0.3634 -0.8918 -0.5105 29 1 6.1991 0.8544 -0.0083 30 1 7.7884 2.7309 -0.0294 31 1 6.9636 5.0487 -0.0290 32 1 4.5467 5.5043 -0.0194 33 1 1.3900 -4.1560 -1.3782 34 1 1.2585 -2.5380 -2.1078 35 1 2.8545 -3.1820 -1.6536 36 1 3.2872 -3.1136 1.2319 37 1 4.1779 -5.4374 3.4530 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252484608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:38 Heat of formation + Delta-G solvation = 69.386900 kcal Electronic energy + Delta-G solvation = -21536.994564 eV Core-core repulsion = 18258.979359 eV Total energy + Delta-G solvation = -3278.015205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 366.010 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.99504 -39.95319 -37.46261 -34.59168 -33.49796 -33.01666 -31.47949 -30.35440 -30.06009 -28.15341 -26.09168 -25.74620 -23.65023 -22.76341 -22.33431 -20.15967 -19.00594 -18.91236 -17.63131 -16.74288 -16.61540 -16.07976 -15.99297 -15.65171 -15.34983 -14.89626 -14.50973 -14.48125 -14.35989 -14.21194 -13.92718 -13.35383 -13.27902 -13.19845 -12.77900 -12.69727 -12.61529 -12.33751 -12.23669 -12.11034 -12.04635 -11.76406 -11.75122 -11.54018 -11.05607 -10.59156 -10.13220 -9.83883 -9.77182 -9.14504 -9.02992 -7.96345 -5.27306 -0.80224 0.14509 0.29010 0.47464 0.75672 0.78832 1.47372 1.50371 1.56142 1.86132 2.54658 2.66833 2.89959 3.37952 3.75270 3.81355 3.84104 3.93082 4.10331 4.30749 4.32204 4.34719 4.46296 4.52404 4.61487 4.76009 4.78512 4.86034 4.91295 4.97872 5.10044 5.15432 5.24644 5.35857 5.38493 5.43851 5.49558 5.77393 6.23167 6.72187 7.30113 7.98986 8.24931 9.26767 Molecular weight = 366.01amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.003080 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.548654 B = 9088.665387 C =10051.773314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.046 3.954 3 N -0.435 5.435 4 C 0.073 3.927 5 C -0.020 4.020 6 C -0.107 4.107 7 C -0.097 4.097 8 C -0.091 4.091 9 C -0.096 4.096 10 C -0.077 4.077 11 Br -0.027 7.027 12 S 0.095 5.905 13 C -0.203 4.203 14 C 0.241 3.759 15 H 0.075 0.925 16 C -0.151 4.151 17 N -0.734 5.734 18 C -0.245 4.245 19 H 0.083 0.917 20 C -0.072 4.072 21 N -0.969 5.969 22 Si 0.975 3.025 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.278 1.278 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.158 0.842 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.372 0.628 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 22.848 -9.226 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 N -0.149 5.149 4 C -0.201 4.201 5 C -0.025 4.025 6 C -0.129 4.129 7 C -0.115 4.115 8 C -0.110 4.110 9 C -0.116 4.116 10 C -0.161 4.161 11 Br 0.059 6.941 12 S 0.354 5.646 13 C -0.325 4.325 14 C 0.130 3.870 15 H 0.093 0.907 16 C -0.211 4.211 17 N -0.376 5.376 18 C -0.376 4.376 19 H 0.101 0.899 20 C -0.264 4.264 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.204 1.204 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.185 0.815 31 H 0.192 0.808 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.205 0.795 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.713 22.719 -9.178 24.652 hybrid contribution -0.416 -1.323 0.766 1.584 sum 2.297 21.396 -8.411 23.105 Atomic orbital electron populations 1.20407 0.85638 1.03918 1.03183 1.20512 0.99570 0.85588 1.03072 1.67141 1.03919 1.29243 1.14626 1.26018 0.93006 0.95058 1.06058 1.17902 0.92042 0.88780 1.03803 1.21434 0.90558 1.01329 0.99534 1.21575 1.01252 0.91756 0.96916 1.21772 0.94847 0.98044 0.96366 1.21445 0.93112 0.98537 0.98464 1.22142 0.92473 0.94550 1.06885 1.96710 1.06048 1.94244 1.97054 1.84900 1.07753 1.02718 1.69253 1.26269 0.94984 1.01203 1.10036 1.18885 0.95358 0.82410 0.90326 0.90700 1.22316 1.00997 1.01018 0.96778 1.42726 1.15260 1.30480 1.49086 1.19613 0.98023 1.02477 1.17514 0.89918 1.25576 0.97059 1.02732 1.01038 1.69827 1.12111 1.42301 1.37652 0.85200 0.77175 0.79345 0.77952 1.20136 1.22354 1.20370 0.90841 0.89809 0.89666 0.85073 0.81547 0.80834 0.82472 0.92608 0.91076 0.94242 0.79506 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 9.76 71.23 0.70 -1.31 16 2 C 0.05 1.58 6.69 41.60 0.28 1.86 16 3 N -0.44 -14.85 7.27 -177.81 -1.29 -16.14 16 4 C 0.07 2.42 7.29 87.48 0.64 3.06 16 5 C -0.02 -0.54 5.87 -20.08 -0.12 -0.66 16 6 C -0.11 -2.37 9.61 22.52 0.22 -2.16 16 7 C -0.10 -1.41 10.03 22.23 0.22 -1.19 16 8 C -0.09 -1.11 10.04 22.32 0.22 -0.89 16 9 C -0.10 -1.60 9.78 22.25 0.22 -1.39 16 10 C -0.08 -1.88 6.26 22.57 0.14 -1.74 16 11 Br -0.03 -0.71 30.48 -20.37 -0.62 -1.33 16 12 S 0.10 3.40 21.64 -56.49 -1.22 2.18 16 13 C -0.20 -7.66 5.44 24.66 0.13 -7.53 16 14 C 0.24 9.76 3.02 44.25 0.13 9.89 16 15 H 0.08 2.95 6.65 -2.39 -0.02 2.93 16 16 C -0.15 -5.43 9.47 71.98 0.68 -4.75 16 17 N -0.73 -37.53 5.11 -326.49 -1.67 -39.20 16 18 C -0.24 -13.48 9.93 84.03 0.83 -12.65 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 21 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 22 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.14 6.96 -2.39 -0.02 2.13 16 29 H 0.13 2.89 7.30 -2.91 -0.02 2.86 16 30 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 32 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.37 20.57 7.10 -92.71 -0.66 19.91 16 37 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -68.73 346.14 2.72 -66.01 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.45 Total: 22.82 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.77 Total: -23.06 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -2.68 Total: -114.53 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.22 Total: 2.18 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -0.62 Total: -1.33 kcal Total: -68.73 2.72 -66.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252484608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.395 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds