Wall clock time and date at job start Tue Mar 31 2020 07:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31312 * 122.07382 * 2 1 4 4 C 1.30235 * 117.03278 * 179.75355 * 3 2 1 5 5 C 1.47852 * 125.47157 * 180.22143 * 4 3 2 6 6 C 1.39565 * 120.14924 * 180.02562 * 5 4 3 7 7 C 1.37940 * 119.86567 * 179.72213 * 6 5 4 8 8 C 1.38386 * 120.16491 * 0.56042 * 7 6 5 9 9 C 1.38308 * 120.29720 * 359.71699 * 8 7 6 10 10 C 1.38083 * 120.13290 * 0.02562 * 9 8 7 11 11 Br 1.89103 * 120.08334 * 179.97438 * 10 9 8 12 12 S 1.76170 * 109.05493 * 0.48263 * 4 3 2 13 13 C 1.33714 * 122.07110 * 180.29025 * 2 1 3 14 14 C 1.50695 * 125.89359 * 359.97438 * 13 2 1 15 15 H 1.08999 * 109.47119 * 14.99919 * 14 13 2 16 16 C 1.53002 * 109.47170 * 255.00132 * 14 13 2 17 17 N 1.46501 * 109.47143 * 135.00339 * 14 13 2 18 18 C 1.36932 * 119.99634 * 204.99957 * 17 14 13 19 19 H 1.07998 * 120.00349 * 359.97438 * 18 17 14 20 20 C 1.38819 * 119.99710 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99867 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00108 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47026 * 89.99635 * 22 20 18 24 24 H 1.48493 * 109.46995 * 209.99728 * 22 20 18 25 25 H 1.48498 * 109.46870 * 329.99819 * 22 20 18 26 26 H 1.09001 * 109.46953 * 269.71164 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.70762 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.71393 * 1 2 3 29 29 H 1.08002 * 120.06074 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.92081 * 180.27559 * 7 6 5 31 31 H 1.07996 * 119.85166 * 179.69459 * 8 7 6 32 32 H 1.08003 * 119.92967 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47175 * 300.00637 * 16 14 13 34 34 H 1.09003 * 109.47172 * 59.99886 * 16 14 13 35 35 H 1.08991 * 109.47468 * 180.02562 * 16 14 13 36 36 H 0.97001 * 120.00088 * 24.99810 * 17 14 13 37 37 H 0.97000 * 119.99724 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2043 1.1127 0.0000 4 6 3.5016 0.9983 0.0050 5 6 4.4621 2.1223 0.0106 6 6 5.8350 1.8713 0.0151 7 6 6.7259 2.9244 0.0145 8 6 6.2615 4.2280 0.0211 9 6 4.9024 4.4846 0.0225 10 6 3.9997 3.4397 0.0178 11 35 2.1418 3.7922 0.0204 12 16 3.9283 -0.7110 -0.0036 13 6 2.2170 -1.1331 -0.0057 14 6 1.6517 -2.5299 -0.0123 15 1 0.5951 -2.4930 -0.2777 16 6 1.8069 -3.1495 1.3781 17 7 2.3735 -3.3443 -0.9931 18 6 1.7672 -4.4357 -1.5556 19 1 0.7572 -4.6963 -1.2759 20 6 2.4513 -5.2077 -2.4846 21 7 3.6825 -4.8903 -2.8251 22 14 1.6241 -6.6962 -3.2526 23 1 0.9124 -6.2839 -4.4890 24 1 2.6511 -7.7146 -3.5888 25 1 0.6512 -7.2731 -2.2904 26 1 -0.3633 -0.0052 1.0277 27 1 -0.3634 0.8926 -0.5093 28 1 -0.3633 -0.8874 -0.5183 29 1 6.1990 0.8545 0.0141 30 1 7.7884 2.7311 0.0135 31 1 6.9635 5.0487 0.0256 32 1 4.5466 5.5043 0.0272 33 1 2.8634 -3.1863 1.6436 34 1 1.2699 -2.5435 2.1079 35 1 1.3984 -4.1599 1.3733 36 1 3.2808 -3.1104 -1.2441 37 1 4.1604 -5.4295 -3.4745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252484609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:48 Heat of formation + Delta-G solvation = 86.219913 kcal Electronic energy + Delta-G solvation = -21536.605505 eV Core-core repulsion = 18259.320235 eV Total energy + Delta-G solvation = -3277.285270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 366.010 amu Computer time = 6.57 seconds Orbital eigenvalues (eV) -39.83205 -38.95107 -35.79256 -33.10328 -32.28856 -31.83091 -30.27053 -29.19712 -28.58201 -26.80889 -24.87433 -23.92476 -22.74826 -21.66152 -20.90353 -18.69026 -17.67386 -17.35863 -16.47937 -15.63696 -15.20770 -14.85863 -14.64414 -14.42916 -13.70896 -13.64097 -13.48522 -13.32408 -13.18229 -12.69099 -12.37226 -12.20429 -12.09257 -11.76514 -11.50992 -11.41311 -11.04990 -10.91548 -10.84562 -10.78663 -10.59059 -10.38039 -10.15148 -9.82661 -9.56084 -9.05552 -8.88857 -8.79555 -8.64349 -7.86256 -7.10777 -5.85560 -3.15501 0.32046 0.96590 1.54308 1.60576 1.71141 2.10674 3.07048 3.39257 3.44265 3.45905 3.58083 4.01576 4.51537 4.59503 4.67475 4.97409 5.07791 5.16645 5.29126 5.39102 5.41956 5.53465 5.62276 5.74254 5.85472 5.93548 5.94289 5.96971 6.07559 6.12916 6.18612 6.24824 6.48986 6.51163 6.62415 6.65311 6.90596 7.61164 8.03287 8.30801 9.42594 9.94637 10.30337 11.36491 Molecular weight = 366.01amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.003079 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.339453 B = 9090.283786 C =10053.078759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.040 3.960 3 N -0.421 5.421 4 C 0.052 3.948 5 C 0.020 3.980 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.111 4.111 9 C -0.094 4.094 10 C -0.064 4.064 11 Br -0.014 7.014 12 S 0.118 5.882 13 C -0.169 4.169 14 C 0.240 3.760 15 H 0.072 0.928 16 C -0.162 4.162 17 N -0.720 5.720 18 C -0.245 4.245 19 H 0.074 0.926 20 C -0.009 4.009 21 N -0.928 5.928 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.385 0.615 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 20.692 8.619 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 N -0.135 5.135 4 C -0.222 4.222 5 C 0.015 3.985 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.147 4.147 11 Br 0.073 6.927 12 S 0.376 5.624 13 C -0.291 4.291 14 C 0.128 3.872 15 H 0.090 0.910 16 C -0.222 4.222 17 N -0.362 5.362 18 C -0.376 4.376 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.576 5.576 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.219 0.781 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.349 20.553 8.534 22.378 hybrid contribution -0.400 -0.943 -0.632 1.203 sum 1.949 19.610 7.902 21.232 Atomic orbital electron populations 1.20344 0.87495 1.03152 1.02355 1.20049 0.98253 0.85925 1.05068 1.67021 1.03725 1.29668 1.13055 1.25433 0.92669 0.95054 1.09018 1.17735 0.91487 0.89025 1.00274 1.21257 0.91018 1.00306 0.99515 1.21148 1.00032 0.92216 0.98685 1.21251 0.94956 0.97159 0.99745 1.21080 0.92711 0.98263 0.99390 1.21953 0.92594 0.94224 1.05975 1.96737 1.04591 1.94372 1.96970 1.84927 1.07663 1.01312 1.68472 1.26543 0.94472 1.01707 1.06424 1.18830 0.95741 0.82009 0.90610 0.91031 1.22478 1.01215 1.01199 0.97337 1.42565 1.15624 1.30282 1.47689 1.19235 0.97951 1.02248 1.18120 0.90776 1.24775 0.96366 0.99663 0.99746 1.69670 1.10747 1.40968 1.36170 0.86161 0.78220 0.82310 0.79318 1.21579 1.21677 1.20601 0.91222 0.91177 0.90460 0.84812 0.84825 0.84975 0.84731 0.93318 0.93950 0.91775 0.78077 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 9.98 36.01 0.36 -0.70 16 2 C 0.04 0.70 6.69 -84.40 -0.56 0.13 16 3 N -0.42 -7.17 7.27 -7.55 -0.05 -7.23 16 4 C 0.05 0.86 7.29 -14.30 -0.10 0.75 16 5 C 0.02 0.29 5.87 -104.95 -0.62 -0.33 16 6 C -0.10 -1.17 9.61 -39.20 -0.38 -1.55 16 7 C -0.10 -0.93 10.03 -39.64 -0.40 -1.32 16 8 C -0.11 -0.93 10.04 -39.50 -0.40 -1.33 16 9 C -0.09 -0.94 9.78 -39.61 -0.39 -1.33 16 10 C -0.06 -0.83 6.26 -39.12 -0.24 -1.07 16 11 Br -0.01 -0.18 30.48 -68.01 -2.07 -2.25 16 12 S 0.12 2.04 21.64 -107.50 -2.33 -0.28 16 13 C -0.17 -3.13 5.44 -35.90 -0.20 -3.33 16 14 C 0.24 4.81 3.18 -69.08 -0.22 4.60 16 15 H 0.07 1.41 6.26 -51.93 -0.33 1.08 16 16 C -0.16 -2.92 9.47 37.16 0.35 -2.57 16 17 N -0.72 -17.92 5.11 -54.55 -0.28 -18.20 16 18 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.10 6.52 -51.93 -0.34 0.76 16 29 H 0.13 1.49 7.30 -52.49 -0.38 1.10 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.38 10.20 7.10 -40.82 -0.29 9.91 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -30.97 345.69 -11.12 -42.10 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.27 Total: 5.79 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -3.04 Total: -15.18 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.39 Total: -52.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.33 Total: -0.28 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -2.07 Total: -2.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.97 -11.12 -42.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252484609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.316 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.58 seconds