Wall clock time and date at job start Tue Mar 31 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47196 * 2 1 4 4 C 1.50699 * 109.47443 * 239.99950 * 2 1 3 5 5 H 1.08002 * 120.00011 * 243.69434 * 4 2 1 6 6 C 1.37877 * 119.99750 * 63.69026 * 4 2 1 7 7 N 1.31517 * 119.99859 * 195.79973 * 6 4 2 8 8 Si 1.86793 * 120.00172 * 15.80879 * 6 4 2 9 9 H 1.48493 * 109.47421 * 94.79669 * 8 6 4 10 10 H 1.48500 * 109.47144 * 214.80140 * 8 6 4 11 11 H 1.48503 * 109.47153 * 334.79628 * 8 6 4 12 12 S 1.81405 * 109.47130 * 120.00102 * 2 1 3 13 13 C 1.76208 * 102.99768 * 290.17750 * 12 2 1 14 14 C 1.38785 * 120.10340 * 353.76997 * 13 12 2 15 15 C 1.38204 * 119.98470 * 180.32060 * 14 13 12 16 16 C 1.38295 * 120.19908 * 359.70506 * 15 14 13 17 17 C 1.38249 * 120.21044 * 359.97438 * 16 15 14 18 18 C 1.38650 * 120.01319 * 0.04565 * 17 16 15 19 19 N 1.40138 * 120.10272 * 179.97438 * 18 17 16 20 20 C 1.34772 * 119.99851 * 340.25306 * 19 18 17 21 21 O 1.21297 * 120.00116 * 354.46306 * 20 19 18 22 22 C 1.50699 * 120.00240 * 174.46289 * 20 19 18 23 23 N 1.46898 * 109.47538 * 180.02562 * 22 20 19 24 24 C 1.47010 * 111.00107 * 293.95745 * 23 22 20 25 25 C 1.53090 * 109.26040 * 177.60805 * 24 23 22 26 26 O 1.43017 * 109.26135 * 56.84476 * 25 24 23 27 27 C 1.43017 * 113.73765 * 301.33220 * 26 25 24 28 28 C 1.47015 * 111.00133 * 170.31970 * 23 22 20 29 29 H 1.09003 * 109.50582 * 62.41412 * 28 23 22 30 30 C 1.53002 * 109.50737 * 302.32914 * 28 23 22 31 31 H 1.09000 * 109.47333 * 302.84624 * 1 2 3 32 32 H 1.08997 * 109.47383 * 62.85236 * 1 2 3 33 33 H 1.09008 * 109.46992 * 182.84641 * 1 2 3 34 34 H 0.96999 * 120.00059 * 180.02562 * 7 6 4 35 35 H 1.08002 * 120.01026 * 0.02838 * 14 13 12 36 36 H 1.08000 * 119.89890 * 179.72858 * 15 14 13 37 37 H 1.07998 * 119.89400 * 180.02562 * 16 15 14 38 38 H 1.08001 * 119.99541 * 180.02562 * 17 16 15 39 39 H 0.96993 * 120.00047 * 160.25726 * 19 18 17 40 40 H 1.09010 * 109.47122 * 60.00059 * 22 20 19 41 41 H 1.08996 * 109.47185 * 300.00600 * 22 20 19 42 42 H 1.09001 * 109.50834 * 57.66482 * 24 23 22 43 43 H 1.09004 * 109.50709 * 297.53824 * 24 23 22 44 44 H 1.09000 * 109.50947 * 176.78349 * 25 24 23 45 45 H 1.09002 * 109.50810 * 296.90935 * 25 24 23 46 46 H 1.08997 * 109.50687 * 298.73514 * 27 26 25 47 47 H 1.08998 * 109.54243 * 178.61988 * 27 26 25 48 48 H 1.09004 * 109.47348 * 59.99948 * 30 28 23 49 49 H 1.09000 * 109.47171 * 179.97438 * 30 28 23 50 50 H 1.09005 * 109.46879 * 300.00081 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6032 -1.6220 -1.1324 6 6 1.7632 -0.1966 -2.4812 7 7 1.9182 -0.9493 -3.5486 8 14 1.1787 1.5685 -2.6600 9 1 2.3422 2.4500 -2.9328 10 1 0.2143 1.6590 -3.7855 11 1 0.5149 1.9998 -1.4035 12 16 2.1346 -0.8552 1.4811 13 6 1.7084 0.2549 2.7815 14 6 1.1803 1.5038 2.4855 15 6 0.8531 2.3751 3.5071 16 6 1.0444 2.0044 4.8257 17 6 1.5636 0.7598 5.1300 18 6 1.8954 -0.1211 4.1120 19 7 2.4224 -1.3830 4.4183 20 6 2.9761 -1.6068 5.6264 21 8 3.1095 -0.6917 6.4114 22 6 3.4296 -2.9939 6.0023 23 7 3.9928 -2.9743 7.3588 24 6 5.2278 -2.1781 7.4051 25 6 5.7471 -2.1348 8.8446 26 8 5.9463 -3.4708 9.3146 27 6 4.7635 -4.2742 9.2840 28 6 4.2343 -4.3392 7.8488 29 1 4.9693 -4.8302 7.2110 30 6 2.9251 -5.1306 7.8224 31 1 -0.3634 0.5574 0.8634 32 1 -0.3634 0.4689 -0.9144 33 1 -0.3633 -1.0265 0.0510 34 1 1.7292 -0.5877 -4.4286 35 1 1.0296 1.7966 1.4569 36 1 0.4463 3.3483 3.2751 37 1 0.7865 2.6890 5.6201 38 1 1.7112 0.4737 6.1609 39 1 2.3887 -2.0953 3.7608 40 1 4.1899 -3.3310 5.2976 41 1 2.5790 -3.6748 5.9722 42 1 5.0204 -1.1644 7.0623 43 1 5.9793 -2.6343 6.7607 44 1 6.6929 -1.5937 8.8742 45 1 5.0186 -1.6305 9.4794 46 1 4.0063 -3.8321 9.9315 47 1 4.9972 -5.2805 9.6315 48 1 2.5468 -5.1732 6.8011 49 1 3.1049 -6.1425 8.1854 50 1 2.1910 -4.6399 8.4616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252486460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:25 Heat of formation + Delta-G solvation = -31.566725 kcal Electronic energy + Delta-G solvation = -30521.647566 eV Core-core repulsion = 26447.783967 eV Total energy + Delta-G solvation = -4073.863599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 7.05 seconds Orbital eigenvalues (eV) -40.84278 -39.77812 -38.21790 -36.12158 -34.87198 -34.18474 -32.88615 -31.60947 -30.50249 -30.42200 -28.88030 -27.45915 -25.40518 -25.31980 -23.13819 -22.88626 -22.50349 -21.33788 -20.51787 -20.23609 -18.15129 -17.40716 -17.02411 -16.67876 -16.53650 -16.42069 -15.97992 -15.43580 -15.30885 -15.08856 -14.92142 -14.48654 -14.17502 -14.11195 -13.81308 -13.73525 -13.50607 -13.26687 -13.00715 -12.73545 -12.55625 -12.38023 -12.34432 -12.17871 -12.02331 -11.86948 -11.57188 -11.44204 -11.31283 -11.19600 -10.83299 -10.66960 -10.51814 -10.44133 -10.00982 -9.81053 -9.75227 -9.54510 -9.28928 -9.17871 -8.72308 -8.67611 -8.08210 -6.74445 -6.34995 -4.34472 1.37931 1.57419 2.19756 2.53048 2.78013 3.10897 3.19448 3.23923 3.31157 3.49423 3.59984 3.99050 4.19490 4.33791 4.41860 4.57303 4.74243 4.79768 4.88388 4.95155 4.98518 4.99263 5.12733 5.15165 5.23441 5.24632 5.32986 5.40571 5.46511 5.51282 5.60059 5.62855 5.69452 5.73928 5.82127 6.03832 6.11139 6.22506 6.27345 6.31578 6.45685 6.49721 6.59377 6.59612 6.66487 6.75198 6.84388 7.03614 7.19126 7.31531 7.38892 8.02264 8.13518 8.67770 9.23952 10.76561 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.015432 B = 0.002266 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.933813 B =12352.353457 C =13395.705190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.084 0.916 6 C 0.090 3.910 7 N -0.879 5.879 8 Si 0.864 3.136 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.254 1.254 12 S -0.137 6.137 13 C -0.103 4.103 14 C -0.117 4.117 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.124 4.124 18 C 0.154 3.846 19 N -0.660 5.660 20 C 0.515 3.485 21 O -0.506 6.506 22 C 0.030 3.970 23 N -0.513 5.513 24 C 0.011 3.989 25 C 0.067 3.933 26 O -0.388 6.388 27 C 0.071 3.929 28 C 0.043 3.957 29 H 0.053 0.947 30 C -0.150 4.150 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.269 0.731 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.154 0.846 39 H 0.414 0.586 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.039 0.961 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -3.709 22.803 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.102 0.898 6 C -0.116 4.116 7 N -0.514 5.514 8 Si 0.690 3.310 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.179 1.179 12 S 0.110 5.890 13 C -0.219 4.219 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.146 4.146 18 C 0.054 3.946 19 N -0.304 5.304 20 C 0.303 3.697 21 O -0.381 6.381 22 C -0.101 4.101 23 N -0.239 5.239 24 C -0.117 4.117 25 C -0.010 4.010 26 O -0.306 6.306 27 C -0.006 4.006 28 C -0.065 4.065 29 H 0.071 0.929 30 C -0.207 4.207 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.171 0.829 39 H 0.251 0.749 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.058 0.942 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.817 -4.149 23.501 23.933 hybrid contribution -0.649 1.543 -1.636 2.340 sum 1.168 -2.606 21.865 22.051 Atomic orbital electron populations 1.22508 0.96519 1.01798 1.00010 1.21304 0.95210 0.97668 0.92310 0.93488 1.20287 1.37087 1.11462 0.87026 0.89833 1.24788 0.94194 0.97425 0.95230 1.69924 1.47278 1.35504 0.98723 0.87170 0.79241 0.85899 0.78709 1.20183 1.20741 1.17864 1.85066 1.74639 1.29656 0.99622 1.21814 1.05376 0.99055 0.95609 1.21201 1.00211 0.92555 1.00207 1.21025 1.01116 0.99354 0.92734 1.20977 1.00499 0.96423 0.96197 1.21496 0.99419 0.93744 0.99902 1.17244 0.99615 0.86204 0.91577 1.43548 1.57854 1.12608 1.16436 1.20556 0.77235 0.90948 0.81008 1.90573 1.53151 1.44441 1.49943 1.22071 1.01933 0.94905 0.91151 1.61912 1.28496 1.12263 1.21244 1.23010 0.89768 1.00844 0.98073 1.22653 1.01428 0.83670 0.93257 1.87976 1.33355 1.23667 1.85643 1.22685 0.87619 0.95902 0.94407 1.22373 0.97865 0.88726 0.97571 0.92941 1.21885 0.96475 0.99546 1.02830 0.94684 0.92360 0.92071 0.92071 0.85017 0.86261 0.86132 0.82919 0.74853 0.91206 0.86716 0.87467 0.94241 0.88401 0.91979 0.92110 0.88438 0.91900 0.91536 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.09 37.15 0.30 -2.76 16 2 C 0.06 1.42 1.52 -27.89 -0.04 1.37 16 3 H 0.05 1.06 5.50 -51.93 -0.29 0.77 16 4 C -0.52 -13.75 9.02 -34.44 -0.31 -14.06 16 5 H 0.08 2.43 7.96 -52.49 -0.42 2.01 16 6 C 0.09 2.42 5.33 -17.82 -0.10 2.32 16 7 N -0.88 -25.22 13.96 55.43 0.77 -24.45 16 8 Si 0.86 19.76 25.77 -169.99 -4.38 15.38 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.25 -5.38 5.45 56.52 0.31 -5.08 16 12 S -0.14 -2.66 19.88 -107.50 -2.14 -4.80 16 13 C -0.10 -1.81 6.05 -38.90 -0.24 -2.05 16 14 C -0.12 -1.99 8.07 -39.39 -0.32 -2.31 16 15 C -0.12 -1.77 10.04 -39.57 -0.40 -2.16 16 16 C -0.12 -1.65 10.04 -39.56 -0.40 -2.05 16 17 C -0.12 -1.88 8.78 -39.43 -0.35 -2.23 16 18 C 0.15 2.47 6.51 -83.43 -0.54 1.92 16 19 N -0.66 -8.92 5.23 -9.71 -0.05 -8.97 16 20 C 0.52 6.48 7.39 -10.99 -0.08 6.39 16 21 O -0.51 -7.51 11.23 5.54 0.06 -7.45 16 22 C 0.03 0.28 5.23 -4.98 -0.03 0.26 16 23 N -0.51 -5.05 4.28 -227.78 -0.97 -6.02 16 24 C 0.01 0.11 5.29 -3.72 -0.02 0.09 16 25 C 0.07 0.63 7.01 37.20 0.26 0.89 16 26 O -0.39 -3.98 10.83 -35.23 -0.38 -4.36 16 27 C 0.07 0.57 6.29 37.21 0.23 0.80 16 28 C 0.04 0.34 2.59 -67.60 -0.17 0.17 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 C -0.15 -0.92 8.92 37.16 0.33 -0.59 16 31 H 0.03 0.64 6.03 -51.93 -0.31 0.32 16 32 H 0.06 1.22 4.87 -51.93 -0.25 0.97 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.13 2.33 4.89 -52.49 -0.26 2.08 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 2.32 5.43 -52.49 -0.28 2.04 16 39 H 0.41 5.14 7.52 -40.82 -0.31 4.83 16 40 H 0.07 0.60 8.12 -51.92 -0.42 0.17 16 41 H 0.12 0.87 5.77 -51.93 -0.30 0.57 16 42 H 0.11 1.29 5.85 -51.93 -0.30 0.98 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.37 6.17 -51.93 -0.32 0.05 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -30.31 392.81 -10.37 -40.68 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.34 Total: 8.06 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.86 Total: -13.99 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.25 Total: -39.44 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.32 Total: -11.81 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.38 Total: 15.38 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.14 Total: -4.80 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.31 -10.37 -40.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252486460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.113 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.05 seconds