Wall clock time and date at job start Tue Mar 31 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00193 * 2 1 4 4 C 1.38734 * 120.05606 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94832 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.04989 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.93997 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47296 * 90.00051 * 7 6 5 9 9 C 1.38996 * 120.00410 * 179.97438 * 8 7 6 10 10 N 1.29584 * 125.40327 * 359.97334 * 9 8 7 11 11 N 1.37757 * 115.62548 * 179.76411 * 10 9 8 12 12 C 1.29643 * 115.60662 * 0.50178 * 11 10 9 13 13 S 1.76205 * 125.41459 * 179.80022 * 12 11 10 14 14 C 1.81405 * 102.99585 * 359.69334 * 13 12 11 15 15 H 1.08996 * 109.47006 * 304.99351 * 14 13 12 16 16 C 1.52997 * 109.47264 * 65.00262 * 14 13 12 17 17 C 1.53006 * 109.46599 * 185.00034 * 14 13 12 18 18 C 1.50703 * 109.47148 * 65.00059 * 17 14 13 19 19 H 1.08004 * 119.99894 * 0.02562 * 18 17 14 20 20 C 1.37874 * 120.00136 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99679 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00188 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47054 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46936 * 119.99726 * 22 20 18 25 25 H 1.48497 * 109.47316 * 239.99974 * 22 20 18 26 26 S 1.76037 * 109.17308 * 359.53203 * 12 11 10 27 27 C 1.38259 * 120.11158 * 0.25029 * 6 5 4 28 28 C 1.38145 * 120.05708 * 359.45288 * 27 6 5 29 29 H 1.09001 * 109.46676 * 60.00296 * 1 2 3 30 30 H 1.09005 * 109.47525 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47338 * 300.00152 * 1 2 3 32 32 H 1.08005 * 120.03164 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.97507 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47505 * 329.99975 * 7 6 5 35 35 H 1.08997 * 109.47298 * 209.99731 * 7 6 5 36 36 H 0.97000 * 119.99554 * 0.02562 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99579 * 16 14 13 38 38 H 1.09001 * 109.46832 * 179.97438 * 16 14 13 39 39 H 1.09004 * 109.47261 * 59.99751 * 16 14 13 40 40 H 1.08996 * 109.46945 * 184.99593 * 17 14 13 41 41 H 1.09000 * 109.47314 * 304.99715 * 17 14 13 42 42 H 0.97002 * 119.99753 * 180.02562 * 21 20 18 43 43 H 1.08008 * 119.97032 * 179.70155 * 27 6 5 44 44 H 1.08005 * 120.02938 * 180.24700 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0183 0.0028 8 7 4.2085 5.4544 -1.3780 9 6 4.8286 6.6724 -1.6310 10 7 5.2501 7.5018 -0.7291 11 7 5.8411 8.6511 -1.2062 12 6 5.8912 8.7611 -2.4970 13 16 6.5827 10.1201 -3.3799 14 6 7.1440 11.2244 -2.0546 15 1 6.3107 11.4436 -1.3870 16 6 8.2651 10.5453 -1.2654 17 6 7.6659 12.5275 -2.6635 18 6 6.5321 13.2569 -3.3369 19 1 5.5384 12.8336 -3.3308 20 6 6.7629 14.4650 -3.9598 21 7 7.9725 14.9811 -3.9659 22 14 5.3576 15.3688 -4.7950 23 1 4.1062 14.5830 -4.6469 24 1 5.1821 16.7017 -4.1644 25 1 5.6671 15.5404 -6.2372 26 16 5.1653 7.3334 -3.2275 27 6 1.9213 3.6047 0.0068 28 6 1.2916 2.3751 0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0209 0.3798 0.0014 33 1 5.1346 2.5748 0.0019 34 1 4.9440 4.9377 0.5169 35 1 3.3581 5.7458 0.5168 36 1 3.9222 4.8935 -2.1158 37 1 7.8932 9.6170 -0.8317 38 1 8.6026 11.2091 -0.4694 39 1 9.0983 10.3262 -1.9331 40 1 8.0844 13.1543 -1.8761 41 1 8.4394 12.3014 -3.3976 42 1 8.1348 15.8313 -4.4038 43 1 1.3344 4.5114 0.0121 44 1 0.2130 2.3201 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252490618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:02 Heat of formation + Delta-G solvation = 44.462645 kcal Electronic energy + Delta-G solvation = -25613.692155 eV Core-core repulsion = 21784.619303 eV Total energy + Delta-G solvation = -3829.072853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 365.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70242 -39.24504 -38.33073 -36.02087 -34.59135 -32.18339 -31.87512 -31.55495 -29.97923 -28.13918 -27.44401 -26.11111 -24.34697 -23.32383 -23.18628 -21.93283 -20.84794 -20.46388 -19.32209 -18.68360 -16.98154 -16.86042 -16.71509 -16.37800 -16.27468 -15.52695 -15.28271 -15.16086 -14.64593 -14.54953 -14.35385 -14.30120 -14.03328 -13.34719 -13.20936 -13.13247 -12.91734 -12.54721 -12.49121 -11.98538 -11.81764 -11.64068 -11.60385 -11.46243 -11.26393 -11.22685 -10.83906 -10.71937 -10.59233 -10.41927 -9.91139 -9.53096 -9.50356 -9.47272 -9.40510 -9.15431 -8.71919 -8.56381 -8.41780 -7.13102 -6.06479 -4.08994 0.50819 0.82460 0.87381 1.04077 1.29088 1.85059 2.53945 2.71858 2.88167 2.94171 3.30582 3.37630 3.38454 3.43728 4.22206 4.25696 4.35448 4.43365 4.53349 4.59895 4.76951 4.82142 4.85756 4.92368 5.07403 5.24508 5.31217 5.33774 5.38417 5.52266 5.70807 5.70930 5.80571 5.83128 6.10168 6.11422 6.20394 6.50871 6.54330 6.59826 6.74989 6.82894 6.95731 7.47995 7.52856 7.90655 8.24784 8.26139 8.96160 9.55815 11.04499 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.001549 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.322955 B =18074.420796 C =18649.002996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.135 3.865 4 C -0.155 4.155 5 C -0.057 4.057 6 C -0.147 4.147 7 C 0.182 3.818 8 N -0.690 5.690 9 C 0.306 3.694 10 N -0.357 5.357 11 N -0.270 5.270 12 C 0.030 3.970 13 S 0.035 5.965 14 C -0.058 4.058 15 H 0.091 0.909 16 C -0.148 4.148 17 C 0.038 3.962 18 C -0.524 4.524 19 H 0.064 0.936 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.283 1.283 26 S 0.040 5.960 27 C -0.056 4.056 28 C -0.211 4.211 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.414 0.586 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -30.073 6.507 33.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.090 3.910 4 C -0.173 4.173 5 C -0.075 4.075 6 C -0.148 4.148 7 C 0.057 3.943 8 N -0.334 5.334 9 C -0.077 4.077 10 N -0.193 5.193 11 N -0.099 5.099 12 C -0.369 4.369 13 S 0.264 5.736 14 C -0.188 4.188 15 H 0.109 0.891 16 C -0.207 4.207 17 C -0.001 4.001 18 C -0.563 4.563 19 H 0.083 0.917 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.209 1.209 26 S 0.273 5.727 27 C -0.074 4.074 28 C -0.230 4.230 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.147 0.853 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.017 -29.810 5.950 32.687 hybrid contribution -1.324 0.268 0.515 1.445 sum -13.341 -29.542 6.465 33.053 Atomic orbital electron populations 1.23099 0.78072 1.04179 1.01550 1.86083 1.21663 1.26918 1.88401 1.19133 0.92456 0.84233 0.95201 1.20461 0.91375 0.98787 1.06689 1.20965 1.00158 0.90790 0.95607 1.19758 0.93702 0.94593 1.06778 1.20163 1.00365 0.91643 0.82113 1.43891 1.64812 1.16277 1.08379 1.25863 0.96987 0.92527 0.92370 1.75045 1.19098 0.99914 1.25265 1.75461 1.15999 1.11013 1.07398 1.30999 1.05108 1.03779 0.97057 1.86193 1.68885 1.07335 1.11143 1.23813 1.01035 0.97765 0.96221 0.89088 1.22100 0.97852 1.00662 1.00049 1.19112 0.97047 0.87418 0.96565 1.21304 0.95363 1.04904 1.34702 0.91740 1.24978 0.95604 0.97323 0.96159 1.69961 1.20197 1.19070 1.43920 0.86527 0.82662 0.79644 0.79232 1.19492 1.21031 1.20928 1.85484 1.63387 1.15140 1.08652 1.20937 0.93821 0.97356 0.95319 1.21262 1.00267 0.92208 1.09260 0.92461 0.88066 0.92463 0.84894 0.84872 0.90513 0.90589 0.74869 0.92117 0.91783 0.92353 0.93987 0.95324 0.92895 0.85322 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.32 -2.30 10.50 -19.41 -0.20 -2.50 16 3 C 0.14 1.01 6.69 -39.22 -0.26 0.75 16 4 C -0.15 -1.09 9.99 -39.43 -0.39 -1.49 16 5 C -0.06 -0.38 9.69 -39.60 -0.38 -0.76 16 6 C -0.15 -1.05 5.25 -104.60 -0.55 -1.60 16 7 C 0.18 1.56 6.10 -5.20 -0.03 1.52 16 8 N -0.69 -6.66 5.72 -62.02 -0.35 -7.01 16 9 C 0.31 4.18 8.42 -87.39 -0.74 3.44 16 10 N -0.36 -6.05 11.68 30.85 0.36 -5.69 16 11 N -0.27 -5.08 9.94 31.11 0.31 -4.77 16 12 C 0.03 0.53 7.59 51.84 0.39 0.92 16 13 S 0.03 0.67 20.90 -107.50 -2.25 -1.57 16 14 C -0.06 -1.21 2.47 -26.73 -0.07 -1.27 16 15 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 16 C -0.15 -2.68 9.06 37.16 0.34 -2.35 16 17 C 0.04 0.93 4.45 -27.88 -0.12 0.80 16 18 C -0.52 -14.21 8.53 -34.44 -0.29 -14.50 16 19 H 0.06 1.73 7.60 -52.48 -0.40 1.33 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 22 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 S 0.04 0.56 23.39 -107.50 -2.51 -1.95 16 27 C -0.06 -0.38 9.69 -39.61 -0.38 -0.76 16 28 C -0.21 -1.38 9.04 -39.44 -0.36 -1.74 16 29 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 30 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.16 7.66 -51.93 -0.40 -0.23 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.41 3.14 8.59 -40.82 -0.35 2.79 16 37 H 0.06 1.10 6.22 -51.93 -0.32 0.78 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.13 0.61 6.30 -52.48 -0.33 0.28 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -31.83 400.05 -10.84 -42.68 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.98 Total: -1.96 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.96 Total: -14.35 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 1.05 Total: -42.70 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: -0.20 Total: -2.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -4.76 Total: -3.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.83 -10.84 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252490618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.139 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds