Wall clock time and date at job start Tue Mar 31 2020 07:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 110.99760 * 2 1 4 4 C 1.46899 * 111.00100 * 123.94912 * 2 1 3 5 5 C 1.53002 * 109.46850 * 74.74041 * 4 2 1 6 6 H 1.09000 * 109.47100 * 297.67691 * 5 4 2 7 7 N 1.46495 * 109.47427 * 57.67627 * 5 4 2 8 8 C 1.34774 * 120.00181 * 257.10939 * 7 5 4 9 9 O 1.21586 * 119.99986 * 5.39985 * 8 7 5 10 10 N 1.34777 * 119.99766 * 185.39504 * 8 7 5 11 11 C 1.46505 * 119.99845 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.46888 * 185.13050 * 11 10 8 13 13 C 1.50701 * 115.55384 * 54.15001 * 12 11 10 14 14 H 1.07995 * 119.99851 * 267.04532 * 13 12 11 15 15 C 1.37874 * 120.00028 * 87.04189 * 13 12 11 16 16 N 1.31511 * 120.00504 * 2.69453 * 15 13 12 17 17 Si 1.86804 * 119.99861 * 182.68748 * 15 13 12 18 18 H 1.48497 * 109.47005 * 90.00451 * 17 15 13 19 19 H 1.48500 * 109.47009 * 210.00050 * 17 15 13 20 20 H 1.48501 * 109.47153 * 330.00314 * 17 15 13 21 21 C 1.52999 * 117.50055 * 268.47448 * 12 11 10 22 22 C 1.53007 * 117.49547 * 199.81776 * 12 11 10 23 23 C 1.50703 * 109.47152 * 177.67713 * 5 4 2 24 24 C 1.38242 * 119.98642 * 99.99720 * 23 5 4 25 25 C 1.38213 * 120.01368 * 180.02562 * 24 23 5 26 26 C 1.38350 * 119.98858 * 0.25793 * 25 24 23 27 27 Cl 1.73596 * 120.01565 * 179.70134 * 26 25 24 28 28 C 1.38359 * 119.96709 * 359.46594 * 26 25 24 29 29 C 1.38211 * 119.98890 * 0.55773 * 28 26 25 30 30 H 1.08998 * 109.47838 * 296.32510 * 1 2 3 31 31 H 1.09007 * 109.46960 * 56.32531 * 1 2 3 32 32 H 1.09000 * 109.46847 * 176.32007 * 1 2 3 33 33 H 1.08996 * 109.47102 * 183.95041 * 3 2 1 34 34 H 1.09003 * 109.46921 * 303.95104 * 3 2 1 35 35 H 1.09000 * 109.47039 * 63.95302 * 3 2 1 36 36 H 1.09004 * 109.46811 * 314.74633 * 4 2 1 37 37 H 1.08996 * 109.47288 * 194.74309 * 4 2 1 38 38 H 0.97004 * 119.99910 * 77.10113 * 7 5 4 39 39 H 0.96998 * 120.00264 * 0.02562 * 10 8 7 40 40 H 1.08995 * 109.46899 * 305.12957 * 11 10 8 41 41 H 1.08999 * 109.46744 * 65.12946 * 11 10 8 42 42 H 0.96996 * 120.00909 * 185.01715 * 16 15 13 43 43 H 1.09005 * 117.49700 * 0.02562 * 21 12 11 44 44 H 1.08997 * 117.50346 * 145.02260 * 21 12 11 45 45 H 1.09006 * 117.49863 * 214.98267 * 22 12 11 46 46 H 1.08994 * 117.49751 * 359.97438 * 22 12 11 47 47 H 1.08008 * 119.99393 * 0.02562 * 24 23 5 48 48 H 1.08008 * 120.00762 * 179.97438 * 25 24 23 49 49 H 1.08007 * 120.00362 * 180.25616 * 28 26 25 50 50 H 1.07996 * 119.99335 * 179.72147 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8237 -2.2622 0.8682 6 1 0.7629 -2.4956 0.7772 7 7 2.5101 -2.6162 -0.3766 8 6 1.8002 -2.8122 -1.5053 9 8 0.6030 -2.6001 -1.5151 10 7 2.4174 -3.2434 -2.6232 11 6 1.6456 -3.4571 -3.8501 12 6 2.5517 -4.0633 -4.9234 13 6 3.2801 -5.3210 -4.5248 14 1 4.2762 -5.2603 -4.1121 15 6 2.6747 -6.5490 -4.6869 16 7 1.4832 -6.6273 -5.2381 17 14 3.5469 -8.1019 -4.1236 18 1 3.1857 -8.3881 -2.7119 19 1 3.1325 -9.2412 -4.9812 20 1 5.0157 -7.9109 -4.2298 21 6 3.2726 -3.0984 -5.8669 22 6 2.1013 -3.9395 -6.3805 23 6 2.4152 -3.0491 2.0093 24 6 1.5917 -3.5674 2.9913 25 6 2.1335 -4.2888 4.0383 26 6 3.5010 -4.4877 4.1063 27 17 4.1831 -5.3871 5.4252 28 6 4.3241 -3.9737 3.1201 29 6 3.7811 -3.2520 2.0739 30 1 -0.3635 0.4557 0.9210 31 1 -0.3633 0.5699 -0.8553 32 1 -0.3633 -1.0256 -0.0660 33 1 3.0827 1.3434 -0.0708 34 1 1.5897 1.9164 -0.8525 35 1 1.7043 1.8724 0.9233 36 1 1.4502 -0.4946 2.0417 37 1 3.0534 -0.5395 1.2696 38 1 3.4756 -2.7094 -0.3886 39 1 3.3724 -3.4129 -2.6153 40 1 0.8192 -4.1376 -3.6454 41 1 1.2524 -2.5035 -4.2026 42 1 1.0261 -7.4814 -5.2862 43 1 3.1016 -2.0316 -5.7225 44 1 4.2735 -3.3733 -6.1995 45 1 2.3322 -4.7675 -7.0507 46 1 1.1594 -3.4265 -6.5741 47 1 0.5245 -3.4085 2.9403 48 1 1.4901 -4.6932 4.8057 49 1 5.3913 -4.1321 3.1705 50 1 4.4239 -2.8469 1.3065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252497154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:40 Heat of formation + Delta-G solvation = 21.370029 kcal Electronic energy + Delta-G solvation = -31027.327826 eV Core-core repulsion = 26888.290120 eV Total energy + Delta-G solvation = -4139.037706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.23801 -38.96950 -37.54125 -36.68321 -36.55870 -34.47570 -33.09116 -31.91929 -31.44598 -31.01071 -28.55832 -27.48919 -26.12047 -25.15373 -24.26851 -23.17649 -21.86818 -21.14290 -20.75199 -19.98563 -19.31965 -17.99013 -17.24519 -16.38169 -15.94825 -15.76184 -15.39964 -15.19640 -15.01142 -14.69602 -14.65278 -14.16889 -13.91997 -13.88405 -13.72844 -13.70251 -13.21431 -13.10270 -12.59184 -12.56709 -12.35999 -12.06234 -11.87877 -11.78851 -11.72372 -11.60275 -11.50408 -11.28743 -11.12325 -10.97402 -10.92615 -10.85989 -10.50507 -10.17462 -9.55592 -9.35492 -9.30150 -8.99735 -8.85250 -8.74510 -8.40936 -8.27639 -8.15601 -7.81422 -6.03900 -4.12568 0.84016 1.03104 1.87755 3.21277 3.28405 3.36088 3.36677 3.45011 3.87270 4.02384 4.38607 4.49693 4.60727 4.63691 4.93557 4.96564 5.02831 5.09749 5.16229 5.24740 5.25416 5.32537 5.38826 5.43306 5.48265 5.59067 5.63110 5.68033 5.79441 5.81028 5.93588 5.95682 6.11456 6.22284 6.27816 6.40650 6.50815 6.56217 6.64808 6.78002 6.86167 6.94295 7.06826 7.10483 7.17731 7.47487 7.47747 7.54796 7.73886 7.84256 8.39136 8.83462 8.88706 9.41414 9.54448 11.04062 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.007203 B = 0.003191 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3886.068289 B = 8771.698870 C =11810.499707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.529 5.529 3 C 0.028 3.972 4 C 0.049 3.951 5 C 0.208 3.792 6 H 0.106 0.894 7 N -0.735 5.735 8 C 0.712 3.288 9 O -0.598 6.598 10 N -0.719 5.719 11 C 0.187 3.813 12 C 0.025 3.975 13 C -0.495 4.495 14 H 0.058 0.942 15 C 0.075 3.925 16 N -0.874 5.874 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.213 4.213 22 C -0.142 4.142 23 C -0.083 4.083 24 C -0.094 4.094 25 C -0.108 4.108 26 C -0.036 4.036 27 Cl -0.075 7.075 28 C -0.107 4.107 29 C -0.095 4.095 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.389 0.611 39 H 0.394 0.606 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.260 0.740 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 10.839 18.518 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.252 5.252 3 C -0.121 4.121 4 C -0.081 4.081 5 C 0.100 3.900 6 H 0.124 0.876 7 N -0.391 5.391 8 C 0.412 3.588 9 O -0.477 6.477 10 N -0.371 5.371 11 C 0.063 3.937 12 C 0.024 3.976 13 C -0.533 4.533 14 H 0.076 0.924 15 C -0.129 4.129 16 N -0.510 5.510 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.250 4.250 22 C -0.180 4.180 23 C -0.084 4.084 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.063 4.063 27 Cl -0.047 7.047 28 C -0.126 4.126 29 C -0.113 4.113 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.223 0.777 39 H 0.228 0.772 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.227 10.562 18.002 20.990 hybrid contribution 1.120 -0.797 1.156 1.796 sum 3.347 9.765 19.158 21.762 Atomic orbital electron populations 1.22456 0.86674 1.03832 0.99099 1.61733 1.08501 1.12754 1.42258 1.22369 1.00472 0.89187 1.00029 1.22534 1.00305 0.93584 0.91639 1.19519 0.98405 0.91329 0.80722 0.87573 1.44818 1.09292 1.77025 1.07931 1.15802 0.85214 0.77767 0.80030 1.90788 1.13423 1.59334 1.84198 1.45016 1.12052 1.69910 1.10134 1.20716 0.93727 0.96927 0.82351 1.19055 0.96688 0.94122 0.87708 1.20303 1.01191 0.88882 1.42932 0.92392 1.24948 0.95161 0.98656 0.94106 1.69989 1.13491 1.25536 1.42017 0.86690 0.79967 0.83269 0.78665 1.20684 1.21278 1.19901 1.23056 0.96948 0.95167 1.09819 1.22440 0.95231 1.00455 0.99919 1.20232 0.93857 0.98194 0.96153 1.21005 1.00226 0.96746 0.93338 1.21033 0.93003 0.99364 0.99292 1.20952 0.93739 0.99642 0.91949 1.98371 1.85264 1.73832 1.47188 1.21044 1.00156 0.97960 0.93422 1.20916 0.94640 0.98218 0.97556 0.96807 0.91822 0.89501 0.91718 0.91500 0.96281 0.94052 0.90840 0.77712 0.77242 0.91796 0.95029 0.92968 0.91739 0.90581 0.89574 0.91874 0.84825 0.84871 0.84833 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.11 60.06 0.55 0.89 16 2 N -0.53 -6.48 4.61 -251.25 -1.16 -7.64 16 3 C 0.03 0.28 9.52 60.07 0.57 0.85 16 4 C 0.05 0.51 4.65 -3.82 -0.02 0.50 16 5 C 0.21 2.46 2.41 -69.08 -0.17 2.29 16 6 H 0.11 1.49 5.86 -51.93 -0.30 1.18 16 7 N -0.74 -10.09 4.66 -59.81 -0.28 -10.37 16 8 C 0.71 13.13 8.41 -86.92 -0.73 12.40 16 9 O -0.60 -12.78 14.08 5.29 0.07 -12.70 16 10 N -0.72 -13.99 5.35 -65.23 -0.35 -14.34 16 11 C 0.19 4.22 5.58 -4.04 -0.02 4.20 16 12 C 0.03 0.59 1.61 -155.66 -0.25 0.34 16 13 C -0.50 -12.66 8.21 -34.44 -0.28 -12.94 16 14 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 15 C 0.08 2.00 5.42 -17.82 -0.10 1.90 16 16 N -0.87 -24.34 12.58 55.43 0.70 -23.64 16 17 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.21 -4.46 9.92 -26.69 -0.26 -4.72 16 22 C -0.14 -3.28 9.10 -26.69 -0.24 -3.53 16 23 C -0.08 -0.85 4.95 -104.62 -0.52 -1.37 16 24 C -0.09 -0.92 9.67 -39.59 -0.38 -1.30 16 25 C -0.11 -1.02 9.83 -39.55 -0.39 -1.41 16 26 C -0.04 -0.36 6.32 -39.50 -0.25 -0.61 16 27 Cl -0.08 -0.71 28.96 -51.86 -1.50 -2.22 16 28 C -0.11 -1.01 9.83 -39.55 -0.39 -1.39 16 29 C -0.09 -0.89 9.22 -39.59 -0.37 -1.26 16 30 H 0.01 0.15 8.10 -51.93 -0.42 -0.27 16 31 H 0.06 0.82 8.12 -51.93 -0.42 0.39 16 32 H 0.09 1.28 5.42 -51.93 -0.28 1.00 16 33 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.04 0.40 7.98 -51.93 -0.41 -0.02 16 37 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 38 H 0.39 4.50 7.13 -40.82 -0.29 4.21 16 39 H 0.39 7.12 8.13 -40.82 -0.33 6.78 16 40 H 0.06 1.66 8.13 -51.93 -0.42 1.24 16 41 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 42 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.09 2.14 8.13 -51.93 -0.42 1.72 16 46 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.13 1.11 8.04 -52.48 -0.42 0.68 16 48 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 49 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 50 H 0.13 1.03 6.80 -52.49 -0.36 0.67 16 LS Contribution 423.71 15.07 6.39 6.39 Total: -1.00 -29.99 423.71 -12.24 -42.23 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.84 Total: 11.81 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.25 Total: -5.18 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -1.09 Total: -55.98 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -29.99 -12.24 -42.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252497154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.603 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds