Wall clock time and date at job start Tue Mar 31 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47359 * 2 1 4 4 C 1.46505 * 119.99567 * 274.99935 * 3 2 1 5 5 C 1.50701 * 109.46928 * 274.99508 * 4 3 2 6 6 C 1.34232 * 126.50157 * 260.02619 * 5 4 3 7 7 N 1.36830 * 109.93053 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.06471 * 180.02562 * 7 6 5 9 9 C 1.37684 * 109.87257 * 0.02562 * 7 6 5 10 10 C 1.39125 * 133.50643 * 180.02562 * 9 7 6 11 11 C 1.37751 * 119.78118 * 179.97438 * 10 9 7 12 12 C 1.38838 * 120.66400 * 0.02562 * 11 10 9 13 13 C 1.36620 * 120.52478 * 359.97438 * 12 11 10 14 14 C 1.39632 * 119.76919 * 359.70228 * 13 12 11 15 15 S 1.65598 * 120.00071 * 94.99602 * 3 2 1 16 16 O 1.42100 * 106.40183 * 336.46031 * 15 3 2 17 17 O 1.42101 * 106.40217 * 203.54279 * 15 3 2 18 18 N 1.65597 * 107.21541 * 90.00311 * 15 3 2 19 19 C 1.46503 * 119.99956 * 269.99520 * 18 15 3 20 20 C 1.46497 * 120.00227 * 89.99985 * 18 15 3 21 21 H 1.09003 * 109.46733 * 0.02562 * 20 18 15 22 22 C 1.53000 * 109.47145 * 119.99787 * 20 18 15 23 23 C 1.50694 * 109.47115 * 239.99861 * 20 18 15 24 24 H 1.08000 * 120.00563 * 359.97438 * 23 20 18 25 25 C 1.37885 * 119.99902 * 180.02562 * 23 20 18 26 26 N 1.31516 * 119.99913 * 359.97438 * 25 23 20 27 27 Si 1.86798 * 119.99766 * 179.97438 * 25 23 20 28 28 H 1.48500 * 109.47353 * 269.99586 * 27 25 23 29 29 H 1.48501 * 109.47293 * 30.00037 * 27 25 23 30 30 H 1.48504 * 109.46680 * 149.99835 * 27 25 23 31 31 H 1.08997 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47289 * 300.00226 * 1 2 3 33 33 H 1.09001 * 109.46404 * 60.00023 * 1 2 3 34 34 H 1.09000 * 109.47278 * 239.99503 * 2 1 3 35 35 H 1.08998 * 109.46887 * 119.99860 * 2 1 3 36 36 H 1.09001 * 109.47352 * 35.00015 * 4 3 2 37 37 H 1.09008 * 109.46739 * 154.99909 * 4 3 2 38 38 H 1.07999 * 125.03824 * 0.02562 * 6 5 4 39 39 H 1.08003 * 120.10947 * 359.94881 * 10 9 7 40 40 H 1.08000 * 119.66838 * 179.97438 * 11 10 9 41 41 H 1.07997 * 119.73199 * 179.97438 * 12 11 10 42 42 H 1.08006 * 120.11680 * 179.97438 * 13 12 11 43 43 H 1.08994 * 109.47665 * 270.00896 * 19 18 15 44 44 H 1.09008 * 109.46786 * 30.00504 * 19 18 15 45 45 H 1.08997 * 109.47360 * 149.99945 * 19 18 15 46 46 H 1.09007 * 109.47356 * 300.00099 * 22 20 18 47 47 H 1.09000 * 109.47156 * 59.99824 * 22 20 18 48 48 H 1.08997 * 109.47359 * 180.02562 * 22 20 18 49 49 H 0.97001 * 119.99646 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4949 1.7887 -1.8823 6 6 4.5995 2.5499 -1.8346 7 7 5.6191 1.9352 -2.5090 8 1 6.5149 2.2929 -2.6114 9 6 5.1842 0.7331 -3.0204 10 6 5.7966 -0.2670 -3.7690 11 6 5.0777 -1.3825 -4.1384 12 6 3.7457 -1.5200 -3.7715 13 6 3.1248 -0.5501 -3.0364 14 6 3.8364 0.5858 -2.6455 15 16 2.4122 2.1202 1.4287 16 8 1.6868 1.4415 2.4448 17 8 2.3057 3.5186 1.1998 18 7 4.0144 1.8137 1.7137 19 6 4.4090 0.6238 2.4718 20 6 5.0373 2.7323 1.2079 21 1 4.5571 3.5522 0.6736 22 6 5.8449 3.2922 2.3806 23 6 5.9579 1.9929 0.2716 24 1 5.7974 0.9434 0.0734 25 6 7.0057 2.6559 -0.3314 26 7 7.2015 3.9337 -0.0897 27 14 8.1473 1.7390 -1.4914 28 1 9.2795 1.1651 -0.7208 29 1 7.3987 0.6448 -2.1603 30 1 8.6711 2.6784 -2.5154 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.3618 1.8096 -1.9454 37 1 2.0923 3.1802 -1.0757 38 1 4.6726 3.5060 -1.3377 39 1 6.8320 -0.1688 -4.0600 40 1 5.5547 -2.1575 -4.7199 41 1 3.1963 -2.4006 -4.0696 42 1 2.0882 -0.6637 -2.7550 43 1 4.4545 0.8677 3.5332 44 1 3.6770 -0.1680 2.3121 45 1 5.3888 0.2862 2.1342 46 1 5.1790 3.8271 3.0579 47 1 6.3250 2.4726 2.9152 48 1 6.6056 3.9761 2.0043 49 1 7.9389 4.4000 -0.5136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252508708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:21 Heat of formation + Delta-G solvation = 12.879974 kcal Electronic energy + Delta-G solvation = -34624.757298 eV Core-core repulsion = 30487.395141 eV Total energy + Delta-G solvation = -4137.362156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.78050 -36.81151 -36.62929 -36.36625 -35.99969 -35.17863 -32.88571 -31.97787 -30.36302 -29.22940 -28.79755 -28.21578 -25.57453 -25.37374 -25.15426 -22.56618 -22.14089 -21.29279 -20.79576 -19.11194 -18.14437 -17.67988 -17.10239 -16.83079 -16.47419 -15.91916 -15.64018 -15.06355 -14.94361 -14.44349 -13.97198 -13.81627 -13.69073 -13.50205 -13.30847 -13.26626 -12.99417 -12.80749 -12.36187 -12.26986 -12.01879 -11.91306 -11.86381 -11.72070 -11.50673 -11.45458 -11.34361 -11.24873 -11.17015 -11.05700 -10.90029 -10.72908 -10.55745 -10.36307 -10.35354 -10.19428 -10.09801 -9.39841 -9.01430 -8.73323 -8.65603 -7.97514 -7.56461 -7.04219 -6.34746 -4.32943 1.29604 1.67645 2.12947 2.81181 3.01518 3.05083 3.33934 3.71218 3.90544 4.01215 4.18662 4.42657 4.90171 4.97513 5.12309 5.19228 5.36157 5.37931 5.49423 5.51881 5.61528 5.63178 5.79092 5.81278 5.89942 5.97973 6.02093 6.16736 6.19325 6.27571 6.31386 6.33643 6.42523 6.45040 6.47615 6.61151 6.69352 6.79187 6.81022 6.95892 7.00829 7.04367 7.10387 7.27059 7.41810 7.47562 7.52719 7.61702 7.80004 7.90142 8.08939 8.14402 8.68128 9.20619 10.66403 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.007131 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.576180 B = 3925.743356 C = 6101.614529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.204 3.796 5 C -0.254 4.254 6 C 0.177 3.823 7 N -0.578 5.578 8 H 0.400 0.600 9 C 0.095 3.905 10 C -0.125 4.125 11 C -0.122 4.122 12 C -0.153 4.153 13 C -0.087 4.087 14 C -0.067 4.067 15 S 2.779 3.221 16 O -0.998 6.998 17 O -0.984 6.984 18 N -0.990 5.990 19 C 0.111 3.889 20 C 0.268 3.732 21 H 0.058 0.942 22 C -0.146 4.146 23 C -0.489 4.489 24 H 0.068 0.932 25 C 0.053 3.947 26 N -0.880 5.880 27 Si 0.846 3.154 28 H -0.282 1.282 29 H -0.246 1.246 30 H -0.281 1.281 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.169 0.831 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.013 0.987 47 H 0.032 0.968 48 H 0.092 0.908 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 -6.772 -5.206 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.079 3.921 5 C -0.261 4.261 6 C 0.048 3.952 7 N -0.186 5.186 8 H 0.242 0.758 9 C -0.012 4.012 10 C -0.145 4.145 11 C -0.142 4.142 12 C -0.172 4.172 13 C -0.105 4.105 14 C -0.072 4.072 15 S 2.789 3.211 16 O -0.982 6.982 17 O -0.969 6.969 18 N -0.831 5.831 19 C -0.036 4.036 20 C 0.164 3.836 21 H 0.075 0.925 22 C -0.206 4.206 23 C -0.529 4.529 24 H 0.086 0.914 25 C -0.148 4.148 26 N -0.519 5.519 27 Si 0.675 3.325 28 H -0.209 1.209 29 H -0.171 1.171 30 H -0.208 1.208 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.186 0.814 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.032 0.968 47 H 0.051 0.949 48 H 0.110 0.890 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.493 -6.022 -4.696 10.024 hybrid contribution 1.921 -0.685 -0.730 2.166 sum -4.572 -6.707 -5.426 9.764 Atomic orbital electron populations 1.22220 0.96644 1.01773 1.02349 1.21160 0.93644 0.82546 1.03012 1.58122 1.79660 1.23079 1.22600 1.19325 0.93073 0.96000 0.83722 1.20180 0.97040 0.96891 1.12032 1.21614 0.84707 0.98177 0.90684 1.42559 1.12115 1.16730 1.47156 0.75767 1.18141 0.94292 0.88731 1.00070 1.20031 0.98993 0.93963 1.01546 1.20561 0.94595 0.97145 1.01859 1.20416 0.95113 0.99447 1.02258 1.20145 0.98861 0.92940 0.98552 1.18927 0.92515 0.95276 1.00500 1.01928 0.73106 0.73191 0.72864 1.93526 1.71774 1.76365 1.56556 1.93546 1.86605 1.30765 1.85944 1.57709 1.24494 1.34132 1.66812 1.21129 1.01562 0.86240 0.94664 1.18728 0.85404 0.87485 0.91934 0.92479 1.22059 1.00774 1.00424 0.97363 1.21474 1.10672 0.97111 1.23642 0.91366 1.25071 0.97056 0.94792 0.97908 1.69871 1.30737 1.08072 1.43204 0.87632 0.81889 0.81282 0.81733 1.20884 1.17104 1.20789 0.92042 0.92236 0.92435 0.90189 0.91118 0.90611 0.89147 0.81356 0.87466 0.86949 0.87152 0.86863 0.94125 0.93358 0.90527 0.96818 0.94916 0.88985 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.12 1.72 6.06 -4.04 -0.02 1.70 16 3 N -1.00 -16.38 2.83 -115.65 -0.33 -16.70 16 4 C 0.20 3.23 6.21 -5.19 -0.03 3.19 16 5 C -0.25 -4.44 5.89 -102.71 -0.61 -5.04 16 6 C 0.18 3.37 7.23 -16.73 -0.12 3.25 16 7 N -0.58 -10.96 3.47 -10.65 -0.04 -11.00 16 8 H 0.40 7.66 3.84 -40.82 -0.16 7.50 16 9 C 0.09 1.73 6.35 -83.99 -0.53 1.19 16 10 C -0.12 -2.07 9.09 -39.43 -0.36 -2.43 16 11 C -0.12 -1.78 10.01 -39.54 -0.40 -2.17 16 12 C -0.15 -2.13 9.97 -39.94 -0.40 -2.53 16 13 C -0.09 -1.29 9.04 -39.65 -0.36 -1.65 16 14 C -0.07 -1.16 6.30 -105.14 -0.66 -1.82 16 15 S 2.78 54.35 6.01 -107.50 -0.65 53.71 16 16 O -1.00 -20.55 16.18 -57.17 -0.93 -21.48 16 17 O -0.98 -21.62 15.25 -57.17 -0.87 -22.49 16 18 N -0.99 -19.78 3.12 -115.85 -0.36 -20.14 16 19 C 0.11 1.97 9.28 59.85 0.56 2.53 16 20 C 0.27 5.91 2.24 -69.09 -0.15 5.75 16 21 H 0.06 1.37 5.62 -51.93 -0.29 1.08 16 22 C -0.15 -3.27 8.97 37.16 0.33 -2.94 16 23 C -0.49 -10.92 4.38 -34.44 -0.15 -11.07 16 24 H 0.07 1.61 7.33 -52.49 -0.38 1.23 16 25 C 0.05 1.21 3.64 -17.82 -0.06 1.14 16 26 N -0.88 -20.94 11.32 55.43 0.63 -20.32 16 27 Si 0.85 17.44 24.80 -169.99 -4.22 13.22 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 H -0.25 -4.88 3.96 56.52 0.22 -4.65 16 30 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.06 5.39 -51.93 -0.28 0.78 16 35 H 0.07 1.01 7.26 -51.93 -0.38 0.64 16 36 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.09 1.47 6.91 -51.92 -0.36 1.11 16 38 H 0.17 3.43 6.39 -52.49 -0.34 3.09 16 39 H 0.11 1.68 7.66 -52.48 -0.40 1.28 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.11 1.46 6.66 -52.48 -0.35 1.11 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.77 7.44 -51.92 -0.39 0.38 16 45 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 46 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 48 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 49 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -26.69 374.56 -10.80 -37.48 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -7.09 Total: 14.67 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.59 Total: -12.60 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.10 Total: -68.15 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.80 Total: -43.97 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -4.22 Total: 13.22 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.65 Total: 53.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.69 -10.80 -37.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252508708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.364 kcal (2) G-P(sol) polarization free energy of solvation -26.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds