Wall clock time and date at job start Tue Mar 31 2020 07:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47359 * 2 1 4 4 C 1.46505 * 119.99567 * 274.99935 * 3 2 1 5 5 C 1.50701 * 109.46928 * 274.99508 * 4 3 2 6 6 C 1.34232 * 126.50157 * 260.02619 * 5 4 3 7 7 N 1.36830 * 109.93053 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.06471 * 180.02562 * 7 6 5 9 9 C 1.37684 * 109.87257 * 0.02562 * 7 6 5 10 10 C 1.39125 * 133.50643 * 180.02562 * 9 7 6 11 11 C 1.37751 * 119.78118 * 179.97438 * 10 9 7 12 12 C 1.38838 * 120.66400 * 0.02562 * 11 10 9 13 13 C 1.36620 * 120.52478 * 359.97438 * 12 11 10 14 14 C 1.39632 * 119.76919 * 359.70228 * 13 12 11 15 15 S 1.65598 * 120.00071 * 94.99602 * 3 2 1 16 16 O 1.42100 * 106.40183 * 336.46031 * 15 3 2 17 17 O 1.42101 * 106.40217 * 203.54279 * 15 3 2 18 18 N 1.65597 * 107.21541 * 90.00311 * 15 3 2 19 19 C 1.46503 * 119.99956 * 269.99520 * 18 15 3 20 20 C 1.46497 * 120.00227 * 89.99985 * 18 15 3 21 21 H 1.09003 * 109.46733 * 0.02562 * 20 18 15 22 22 C 1.53000 * 109.47145 * 119.99787 * 20 18 15 23 23 C 1.50694 * 109.47115 * 239.99861 * 20 18 15 24 24 H 1.08000 * 120.00563 * 359.97438 * 23 20 18 25 25 C 1.37885 * 119.99902 * 180.02562 * 23 20 18 26 26 N 1.31516 * 119.99913 * 359.97438 * 25 23 20 27 27 Si 1.86798 * 119.99766 * 179.97438 * 25 23 20 28 28 H 1.48500 * 109.47353 * 269.99586 * 27 25 23 29 29 H 1.48501 * 109.47293 * 30.00037 * 27 25 23 30 30 H 1.48504 * 109.46680 * 149.99835 * 27 25 23 31 31 H 1.08997 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47289 * 300.00226 * 1 2 3 33 33 H 1.09001 * 109.46404 * 60.00023 * 1 2 3 34 34 H 1.09000 * 109.47278 * 239.99503 * 2 1 3 35 35 H 1.08998 * 109.46887 * 119.99860 * 2 1 3 36 36 H 1.09001 * 109.47352 * 35.00015 * 4 3 2 37 37 H 1.09008 * 109.46739 * 154.99909 * 4 3 2 38 38 H 1.07999 * 125.03824 * 0.02562 * 6 5 4 39 39 H 1.08003 * 120.10947 * 359.94881 * 10 9 7 40 40 H 1.08000 * 119.66838 * 179.97438 * 11 10 9 41 41 H 1.07997 * 119.73199 * 179.97438 * 12 11 10 42 42 H 1.08006 * 120.11680 * 179.97438 * 13 12 11 43 43 H 1.08994 * 109.47665 * 270.00896 * 19 18 15 44 44 H 1.09008 * 109.46786 * 30.00504 * 19 18 15 45 45 H 1.08997 * 109.47360 * 149.99945 * 19 18 15 46 46 H 1.09007 * 109.47356 * 300.00099 * 22 20 18 47 47 H 1.09000 * 109.47156 * 59.99824 * 22 20 18 48 48 H 1.08997 * 109.47359 * 180.02562 * 22 20 18 49 49 H 0.97001 * 119.99646 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4949 1.7887 -1.8823 6 6 4.5995 2.5499 -1.8346 7 7 5.6191 1.9352 -2.5090 8 1 6.5149 2.2929 -2.6114 9 6 5.1842 0.7331 -3.0204 10 6 5.7966 -0.2670 -3.7690 11 6 5.0777 -1.3825 -4.1384 12 6 3.7457 -1.5200 -3.7715 13 6 3.1248 -0.5501 -3.0364 14 6 3.8364 0.5858 -2.6455 15 16 2.4122 2.1202 1.4287 16 8 1.6868 1.4415 2.4448 17 8 2.3057 3.5186 1.1998 18 7 4.0144 1.8137 1.7137 19 6 4.4090 0.6238 2.4718 20 6 5.0373 2.7323 1.2079 21 1 4.5571 3.5522 0.6736 22 6 5.8449 3.2922 2.3806 23 6 5.9579 1.9929 0.2716 24 1 5.7974 0.9434 0.0734 25 6 7.0057 2.6559 -0.3314 26 7 7.2015 3.9337 -0.0897 27 14 8.1473 1.7390 -1.4914 28 1 9.2795 1.1651 -0.7208 29 1 7.3987 0.6448 -2.1603 30 1 8.6711 2.6784 -2.5154 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.3618 1.8096 -1.9454 37 1 2.0923 3.1802 -1.0757 38 1 4.6726 3.5060 -1.3377 39 1 6.8320 -0.1688 -4.0600 40 1 5.5547 -2.1575 -4.7199 41 1 3.1963 -2.4006 -4.0696 42 1 2.0882 -0.6637 -2.7550 43 1 4.4545 0.8677 3.5332 44 1 3.6770 -0.1680 2.3121 45 1 5.3888 0.2862 2.1342 46 1 5.1790 3.8271 3.0579 47 1 6.3250 2.4726 2.9152 48 1 6.6056 3.9761 2.0043 49 1 7.9389 4.4000 -0.5136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252508708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:20 Heat of formation + Delta-G solvation = -2.615188 kcal Electronic energy + Delta-G solvation = -34625.429218 eV Core-core repulsion = 30487.395141 eV Total energy + Delta-G solvation = -4138.034077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.09385 -38.37964 -38.04147 -37.74704 -37.39680 -36.81029 -34.58578 -33.23404 -31.51467 -30.93903 -30.05059 -29.45888 -27.28623 -26.98406 -26.45390 -23.73405 -23.37542 -22.71842 -22.30787 -20.50160 -19.59584 -19.07187 -18.61439 -18.37291 -18.12634 -17.41917 -16.91417 -16.50594 -16.25749 -15.90482 -15.35175 -15.21572 -15.03190 -14.85288 -14.79053 -14.55821 -14.42508 -14.20204 -13.77995 -13.59721 -13.45229 -13.41160 -13.19415 -13.12757 -13.08128 -12.98921 -12.88166 -12.74003 -12.59954 -12.40772 -12.38327 -12.13665 -12.00980 -11.97441 -11.83994 -11.60832 -11.41773 -11.13229 -10.55985 -10.25205 -9.97687 -9.57683 -8.85282 -8.37670 -8.10073 -6.13540 -0.23346 0.44550 0.91060 1.16201 1.34726 1.38858 1.88903 2.21594 2.33024 2.52732 2.68579 3.12900 3.20870 3.46204 3.90276 3.98475 4.12604 4.17673 4.27799 4.38360 4.44918 4.49720 4.58135 4.60123 4.71315 4.75827 4.81276 4.82974 4.92142 4.97890 4.98323 5.04759 5.08363 5.11651 5.16104 5.21050 5.26044 5.30810 5.46036 5.50187 5.59484 5.68447 5.76823 5.82108 5.89087 5.92985 6.07874 6.13287 6.18160 6.30619 6.51649 6.73501 6.86953 7.42091 8.88994 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.007131 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.576180 B = 3925.743356 C = 6101.614529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.115 3.885 3 N -0.990 5.990 4 C 0.202 3.798 5 C -0.240 4.240 6 C 0.152 3.848 7 N -0.586 5.586 8 H 0.393 0.607 9 C 0.071 3.929 10 C -0.148 4.148 11 C -0.113 4.113 12 C -0.148 4.148 13 C -0.085 4.085 14 C -0.084 4.084 15 S 2.786 3.214 16 O -1.008 7.008 17 O -1.014 7.014 18 N -0.997 5.997 19 C 0.107 3.893 20 C 0.276 3.724 21 H 0.034 0.966 22 C -0.142 4.142 23 C -0.474 4.474 24 H 0.058 0.942 25 C 0.028 3.972 26 N -0.905 5.905 27 Si 0.891 3.109 28 H -0.302 1.302 29 H -0.233 1.233 30 H -0.280 1.280 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.015 0.985 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -10.012 -6.749 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.829 5.829 4 C 0.077 3.923 5 C -0.248 4.248 6 C 0.023 3.977 7 N -0.193 5.193 8 H 0.234 0.766 9 C -0.035 4.035 10 C -0.169 4.169 11 C -0.132 4.132 12 C -0.167 4.167 13 C -0.103 4.103 14 C -0.089 4.089 15 S 2.797 3.203 16 O -0.992 6.992 17 O -0.998 6.998 18 N -0.838 5.838 19 C -0.039 4.039 20 C 0.172 3.828 21 H 0.052 0.948 22 C -0.201 4.201 23 C -0.514 4.514 24 H 0.076 0.924 25 C -0.171 4.171 26 N -0.545 5.545 27 Si 0.720 3.280 28 H -0.231 1.231 29 H -0.157 1.157 30 H -0.206 1.206 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.162 0.838 39 H 0.127 0.873 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.034 0.966 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.210 -9.286 -6.233 13.874 hybrid contribution 2.366 0.208 -0.327 2.398 sum -5.844 -9.078 -6.560 12.633 Atomic orbital electron populations 1.22204 0.94865 1.03440 1.02119 1.21435 0.95108 0.80866 1.03582 1.57906 1.79297 1.24219 1.21509 1.19474 0.93404 0.95591 0.83797 1.20351 0.96896 0.96636 1.10911 1.21381 0.85769 0.98084 0.92434 1.42489 1.11724 1.17360 1.47701 0.76562 1.18527 0.95224 0.88770 1.01028 1.20285 0.99647 0.94632 1.02369 1.20994 0.94943 0.96626 1.00602 1.20855 0.94939 1.00099 1.00814 1.20480 0.99956 0.91945 0.97901 1.19115 0.92530 0.96060 1.01201 1.01543 0.72815 0.72581 0.73344 1.93504 1.71860 1.76348 1.57534 1.93504 1.86911 1.32964 1.86460 1.57666 1.24220 1.34510 1.67380 1.21261 1.01897 0.85966 0.94790 1.18450 0.85519 0.87347 0.91511 0.94789 1.21980 1.00407 1.00200 0.97549 1.21284 1.10477 0.96229 1.23417 0.92401 1.25417 0.97961 0.95038 0.98684 1.69964 1.31218 1.09117 1.44220 0.86949 0.79784 0.80831 0.80437 1.23071 1.15701 1.20645 0.89431 0.94089 0.91081 0.88678 0.91451 0.87199 0.90284 0.83797 0.87261 0.84021 0.83607 0.84328 0.93421 0.91362 0.91049 0.96634 0.94407 0.90847 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 10.24 71.98 0.74 -2.74 16 2 C 0.11 2.88 6.06 86.38 0.52 3.41 16 3 N -0.99 -31.00 2.83 -519.81 -1.47 -32.47 16 4 C 0.20 6.13 6.21 85.63 0.53 6.67 16 5 C -0.24 -8.21 5.89 -18.63 -0.11 -8.32 16 6 C 0.15 5.93 7.23 83.00 0.60 6.53 16 7 N -0.59 -22.43 3.47 -187.62 -0.65 -23.08 16 8 H 0.39 15.38 3.84 -92.71 -0.36 15.02 16 9 C 0.07 2.50 6.35 39.03 0.25 2.74 16 10 C -0.15 -4.62 9.09 22.37 0.20 -4.42 16 11 C -0.11 -2.81 10.01 22.30 0.22 -2.59 16 12 C -0.15 -3.37 9.97 22.03 0.22 -3.15 16 13 C -0.08 -2.16 9.04 22.23 0.20 -1.96 16 14 C -0.08 -2.72 6.30 -20.20 -0.13 -2.85 16 15 S 2.79 108.45 6.01 -56.49 -0.34 108.11 16 16 O -1.01 -40.67 16.18 -128.00 -2.07 -42.75 16 17 O -1.01 -45.54 15.25 -128.00 -1.95 -47.49 16 18 N -1.00 -39.97 3.12 -520.45 -1.62 -41.60 16 19 C 0.11 3.72 9.28 127.77 1.19 4.91 16 20 C 0.28 12.52 2.24 44.24 0.10 12.62 16 21 H 0.03 1.72 5.62 -2.39 -0.01 1.71 16 22 C -0.14 -6.51 8.97 71.98 0.65 -5.87 16 23 C -0.47 -21.64 4.38 25.60 0.11 -21.53 16 24 H 0.06 2.75 7.33 -2.91 -0.02 2.73 16 25 C 0.03 1.32 3.64 84.66 0.31 1.63 16 26 N -0.91 -44.91 11.32 21.45 0.24 -44.67 16 27 Si 0.89 36.88 24.80 68.60 1.70 38.58 16 28 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 29 H -0.23 -9.07 3.96 99.48 0.39 -8.68 16 30 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.10 2.11 5.39 -2.39 -0.01 2.10 16 35 H 0.07 1.75 7.26 -2.39 -0.02 1.73 16 36 H 0.11 2.59 8.11 -2.39 -0.02 2.57 16 37 H 0.08 2.59 6.91 -2.38 -0.02 2.58 16 38 H 0.14 6.28 6.39 -2.91 -0.02 6.26 16 39 H 0.11 3.25 7.66 -2.91 -0.02 3.23 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.14 2.80 6.66 -2.91 -0.02 2.78 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 2.07 7.44 -2.38 -0.02 2.06 16 45 H 0.07 2.55 7.02 -2.39 -0.02 2.53 16 46 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.04 1.64 7.67 -2.39 -0.02 1.62 16 48 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 49 H 0.26 12.70 8.31 -92.71 -0.77 11.93 16 Total: -1.00 -58.82 374.56 -0.25 -59.08 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.31 Total: 41.21 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.60 Total: -14.93 kcal Atomic # 7 Polarization: -138.30 SS G_CDS: -3.50 Total: -141.81 kcal Atomic # 8 Polarization: -86.21 SS G_CDS: -4.02 Total: -90.24 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.70 Total: 38.58 kcal Atomic # 16 Polarization: 108.45 SS G_CDS: -0.34 Total: 108.11 kcal Total: -58.82 -0.25 -59.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252508708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.460 kcal (2) G-P(sol) polarization free energy of solvation -58.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds