Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39415 * 125.63117 * 2 1 4 4 C 1.38174 * 107.61875 * 180.18452 * 3 2 1 5 5 N 1.36088 * 126.48207 * 179.84339 * 4 3 2 6 6 C 1.31195 * 119.99877 * 359.69856 * 5 4 3 7 7 C 1.40893 * 120.00232 * 179.97438 * 6 5 4 8 8 C 1.35086 * 120.00117 * 179.97438 * 7 6 5 9 9 N 1.37108 * 126.75318 * 179.97438 * 8 7 6 10 10 C 1.46503 * 124.05642 * 0.02562 * 9 8 7 11 11 C 1.39359 * 111.84921 * 179.97438 * 9 8 7 12 12 C 1.39470 * 130.58904 * 180.08210 * 11 9 8 13 13 C 1.37902 * 120.14229 * 180.02562 * 12 11 9 14 14 C 1.38312 * 120.35516 * 359.95626 * 13 12 11 15 15 C 1.38377 * 119.84661 * 0.02562 * 14 13 12 16 16 C 1.37753 * 119.95375 * 359.97438 * 15 14 13 17 17 C 1.51140 * 132.52967 * 179.97438 * 16 15 14 18 18 C 1.53006 * 110.47921 * 298.70143 * 17 16 15 19 19 C 1.53002 * 110.48440 * 61.20345 * 17 16 15 20 20 N 1.36516 * 107.04109 * 359.58775 * 4 3 2 21 21 C 1.46503 * 126.11551 * 180.25659 * 20 4 3 22 22 C 1.50701 * 109.46774 * 90.00173 * 21 20 4 23 23 H 1.08003 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.37877 * 119.99829 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00109 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47105 * 90.00210 * 26 24 22 28 28 H 1.48493 * 109.47315 * 210.00529 * 26 24 22 29 29 H 1.48506 * 109.46855 * 330.00560 * 26 24 22 30 30 N 1.30881 * 125.63245 * 179.72321 * 2 1 3 31 31 H 1.09005 * 109.47479 * 270.29565 * 1 2 3 32 32 H 1.08994 * 109.47529 * 30.29887 * 1 2 3 33 33 H 1.09002 * 109.47451 * 150.30169 * 1 2 3 34 34 H 1.08002 * 126.19241 * 0.05468 * 3 2 1 35 35 H 1.08004 * 120.00163 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.99605 * 359.97438 * 7 6 5 37 37 H 1.09000 * 109.46852 * 179.97438 * 10 9 8 38 38 H 1.09002 * 109.46927 * 299.93069 * 10 9 8 39 39 H 1.08998 * 109.46959 * 59.93335 * 10 9 8 40 40 H 1.08001 * 119.92653 * 0.02562 * 12 11 9 41 41 H 1.08004 * 119.82241 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.07968 * 179.97438 * 14 13 12 43 43 H 1.07990 * 120.02548 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.47002 * 181.83141 * 18 17 16 45 45 H 1.08993 * 109.46955 * 301.83578 * 18 17 16 46 46 H 1.09000 * 109.47050 * 61.83407 * 18 17 16 47 47 H 1.08996 * 109.47461 * 298.17104 * 19 17 16 48 48 H 1.08998 * 109.46488 * 58.16970 * 19 17 16 49 49 H 1.08998 * 109.46590 * 178.16800 * 19 17 16 50 50 H 1.09001 * 109.46721 * 209.99838 * 21 20 4 51 51 H 1.08997 * 109.46893 * 330.00033 * 21 20 4 52 52 H 0.96994 * 119.99712 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3192 1.1331 0.0000 4 6 3.6332 0.7059 -0.0042 5 7 4.7410 1.4963 -0.0086 6 6 4.6151 2.8021 -0.0151 7 6 5.7620 3.6205 -0.0192 8 6 5.6323 4.9651 -0.0264 9 7 6.6470 5.8872 -0.0305 10 6 8.0705 5.5406 -0.0281 11 6 6.1610 7.1932 -0.0383 12 6 6.8371 8.4130 -0.0460 13 6 6.1297 9.5968 -0.0525 14 6 4.7467 9.5846 -0.0524 15 6 4.0686 8.3784 -0.0452 16 6 4.7720 7.1940 -0.0387 17 6 4.3360 5.7469 -0.0297 18 6 3.5234 5.4404 1.2301 19 6 3.5194 5.4259 -1.2832 20 7 3.6101 -0.6591 0.0026 21 6 4.7788 -1.5425 0.0067 22 6 5.1799 -1.8382 1.4289 23 1 4.6200 -1.4112 2.2478 24 6 6.2611 -2.6548 1.6846 25 7 6.9425 -3.1751 0.6873 26 14 6.7580 -3.0220 3.4475 27 1 6.0450 -4.2359 3.9201 28 1 8.2235 -3.2524 3.5109 29 1 6.4001 -1.8694 4.3129 30 7 2.2695 -1.0638 0.0051 31 1 -0.3634 0.0053 1.0277 32 1 -0.3634 0.8872 -0.5184 33 1 -0.3634 -0.8927 -0.5091 34 1 1.9823 2.1593 0.0008 35 1 3.6323 3.2499 -0.0174 36 1 6.7448 3.1727 -0.0165 37 1 8.6665 6.4532 -0.0328 38 1 8.3018 4.9609 0.8655 39 1 8.3021 4.9501 -0.9145 40 1 7.9169 8.4305 -0.0468 41 1 6.6586 10.5385 -0.0580 42 1 4.1972 10.5144 -0.0570 43 1 2.9888 8.3655 -0.0446 44 1 3.2455 4.3864 1.2357 45 1 4.1235 5.6627 2.1124 46 1 2.6225 6.0538 1.2395 47 1 2.6184 6.0391 -1.2968 48 1 4.1167 5.6380 -2.1699 49 1 3.2416 4.3719 -1.2757 50 1 4.5317 -2.4741 -0.5024 51 1 5.6051 -1.0542 -0.5099 52 1 7.7033 -3.7493 0.8673 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252512818.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = 152.725212 kcal Electronic energy + Delta-G solvation = -32096.432686 eV Core-core repulsion = 28063.242480 eV Total energy + Delta-G solvation = -4033.190207 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.196 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.75555 -40.29339 -37.87900 -36.28543 -35.25319 -33.81534 -32.33288 -31.76297 -30.61470 -29.73628 -28.94295 -28.26982 -27.54492 -26.93215 -25.94586 -24.37152 -23.17965 -22.51683 -21.61738 -20.71550 -19.64129 -18.88420 -18.57182 -17.09451 -16.97191 -16.55737 -16.09771 -15.57623 -15.43559 -14.77639 -14.60214 -14.42051 -14.31218 -14.10821 -13.98668 -13.80499 -13.73771 -13.31867 -12.97180 -12.95071 -12.79287 -12.62458 -12.56243 -12.52757 -12.33401 -12.18373 -12.04704 -11.76558 -11.72707 -11.41486 -11.38274 -11.11834 -11.07978 -10.87351 -10.78907 -10.73736 -10.21508 -9.79447 -9.67282 -9.38925 -9.16713 -8.92370 -8.52845 -8.13134 -7.75374 -6.90241 -6.14487 -4.19648 0.60410 1.04390 1.33525 2.55511 2.57390 3.24492 3.28034 3.32936 3.36277 3.46389 3.50456 3.91791 4.07506 4.07887 4.38475 4.50090 4.61527 4.73730 4.80979 4.83786 4.88656 4.97612 5.07437 5.10914 5.12508 5.19227 5.28143 5.33589 5.37959 5.40720 5.48083 5.53869 5.57595 5.57899 5.71086 5.79261 5.90302 5.94936 6.00587 6.01034 6.04011 6.11228 6.14717 6.22590 6.25020 6.28554 6.33321 6.54997 6.61811 6.96380 7.05465 7.11685 7.17329 7.47262 7.74075 7.93596 8.01833 8.35163 8.74828 8.88089 9.44201 10.93916 Molecular weight = 364.20amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.002516 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.136283 B =11127.830108 C =13094.416463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.046 3.954 3 C -0.319 4.319 4 C 0.249 3.751 5 N -0.459 5.459 6 C 0.199 3.801 7 C -0.205 4.205 8 C 0.184 3.816 9 N -0.539 5.539 10 C 0.083 3.917 11 C 0.164 3.836 12 C -0.157 4.157 13 C -0.082 4.082 14 C -0.157 4.157 15 C -0.059 4.059 16 C -0.140 4.140 17 C 0.003 3.997 18 C -0.137 4.137 19 C -0.136 4.136 20 N -0.304 5.304 21 C 0.261 3.739 22 C -0.525 4.525 23 H 0.061 0.939 24 C 0.065 3.935 25 N -0.893 5.893 26 Si 0.906 3.094 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.273 1.273 30 N -0.282 5.282 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.050 0.950 51 H 0.059 0.941 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 28.329 -3.222 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 C -0.351 4.351 4 C 0.018 3.982 5 N -0.169 5.169 6 C 0.000 4.000 7 C -0.231 4.231 8 C 0.076 3.924 9 N -0.234 5.234 10 C -0.058 4.058 11 C 0.065 3.935 12 C -0.179 4.179 13 C -0.100 4.100 14 C -0.176 4.176 15 C -0.078 4.078 16 C -0.144 4.144 17 C 0.002 3.998 18 C -0.194 4.194 19 C -0.194 4.194 20 N -0.085 5.085 21 C 0.143 3.857 22 C -0.564 4.564 23 H 0.079 0.921 24 C -0.138 4.138 25 N -0.532 5.532 26 Si 0.733 3.267 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.198 1.198 30 N -0.109 5.109 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.118 0.882 36 H 0.152 0.848 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.068 0.932 51 H 0.077 0.923 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.767 25.933 -3.263 26.283 hybrid contribution 0.072 0.922 0.992 1.356 sum -2.694 26.855 -2.271 27.085 Atomic orbital electron populations 1.20042 0.87682 1.02352 1.02151 1.21835 0.96406 0.90951 1.02353 1.21647 0.91848 0.99070 1.22549 1.19248 0.89648 0.86428 1.02861 1.68331 1.29243 1.05088 1.14247 1.22662 0.96340 0.89747 0.91289 1.19223 0.99474 0.88735 1.15705 1.20348 0.86936 0.89983 0.95100 1.43938 1.05769 1.02683 1.71010 1.21858 0.78501 1.02134 1.03356 1.18339 0.92925 0.84919 0.97272 1.20299 0.99648 0.89749 1.08211 1.20812 0.94245 0.97037 0.97934 1.20974 0.94268 0.97536 1.04844 1.20244 0.99714 0.90296 0.97503 1.19876 0.92627 0.94581 1.07288 1.19101 0.92904 0.89525 0.98258 1.21951 0.99402 1.02845 0.95226 1.21946 0.99370 1.02759 0.95289 1.49684 1.05809 1.03171 1.49838 1.19728 0.78321 0.88592 0.99036 1.21234 1.13765 1.30231 0.91141 0.92116 1.24894 0.95664 0.95242 0.98009 1.69929 1.19763 1.32526 1.30946 0.86364 0.77602 0.78784 0.83950 1.20382 1.20895 1.19784 1.77262 0.86889 1.22535 1.24196 0.91315 0.91295 0.91445 0.84729 0.88153 0.84835 0.90113 0.90869 0.90904 0.86134 0.85625 0.85693 0.85733 0.90923 0.91963 0.91339 0.91338 0.91991 0.90950 0.93196 0.92275 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.53 16 2 C 0.05 0.93 7.18 -82.56 -0.59 0.34 16 3 C -0.32 -6.20 9.96 -39.17 -0.39 -6.59 16 4 C 0.25 5.68 7.65 -154.48 -1.18 4.50 16 5 N -0.46 -9.76 10.38 -11.89 -0.12 -9.88 16 6 C 0.20 3.19 8.20 -16.82 -0.14 3.06 16 7 C -0.20 -2.85 9.44 -39.70 -0.37 -3.22 16 8 C 0.18 2.14 5.66 -81.02 -0.46 1.68 16 9 N -0.54 -5.59 3.20 -116.57 -0.37 -5.96 16 10 C 0.08 0.67 10.38 59.85 0.62 1.29 16 11 C 0.16 1.62 6.70 -83.73 -0.56 1.06 16 12 C -0.16 -1.27 9.72 -39.25 -0.38 -1.66 16 13 C -0.08 -0.56 10.02 -39.68 -0.40 -0.96 16 14 C -0.16 -1.07 10.06 -39.50 -0.40 -1.47 16 15 C -0.06 -0.46 10.04 -39.71 -0.40 -0.86 16 16 C -0.14 -1.33 4.97 -104.34 -0.52 -1.84 16 17 C 0.00 0.03 0.68 -156.26 -0.11 -0.08 16 18 C -0.14 -1.28 8.38 37.16 0.31 -0.97 16 19 C -0.14 -1.23 8.38 37.16 0.31 -0.91 16 20 N -0.30 -7.84 3.64 -61.61 -0.22 -8.06 16 21 C 0.26 7.36 6.15 -5.19 -0.03 7.33 16 22 C -0.52 -15.63 9.39 -34.44 -0.32 -15.96 16 23 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 24 C 0.06 1.88 5.46 -17.82 -0.10 1.78 16 25 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 26 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 30 N -0.28 -6.84 12.54 33.59 0.42 -6.42 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.13 2.08 7.02 -52.49 -0.37 1.71 16 35 H 0.10 1.38 2.32 -52.48 -0.12 1.25 16 36 H 0.13 1.95 7.68 -52.48 -0.40 1.54 16 37 H 0.08 0.48 6.92 -51.93 -0.36 0.12 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.12 0.77 7.21 -52.49 -0.38 0.39 16 41 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.07 0.74 5.57 -51.93 -0.29 0.45 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.70 5.56 -51.93 -0.29 0.41 16 50 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 51 H 0.06 1.73 8.12 -51.93 -0.42 1.31 16 52 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 424.87 15.07 6.40 6.40 Total: -1.00 -35.40 424.87 -10.58 -45.98 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.67 Total: 0.53 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -4.73 Total: -14.02 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.44 Total: -56.20 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -35.40 -10.58 -45.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252512818.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.709 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds