Wall clock time and date at job start Tue Mar 31 2020 07:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47046 * 239.99618 * 3 2 1 5 5 H 1.48501 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47385 * 119.99630 * 3 2 1 7 7 C 1.38802 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99734 * 180.02562 * 7 2 1 9 9 S 1.76191 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00107 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47120 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00022 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99859 * 179.97438 * 11 10 9 14 14 C 1.39755 * 120.00055 * 185.52187 * 13 11 10 15 15 C 1.37758 * 120.23613 * 24.85512 * 14 13 11 16 16 C 1.39155 * 120.84839 * 180.18806 * 15 14 13 17 17 C 1.36291 * 120.94638 * 0.12690 * 16 15 14 18 18 Br 1.89099 * 120.05475 * 179.97438 * 17 16 15 19 19 C 1.40479 * 119.88711 * 359.91376 * 17 16 15 20 20 C 1.40778 * 121.29516 * 180.02562 * 19 17 16 21 21 C 1.36575 * 118.15938 * 179.97438 * 20 19 17 22 22 C 1.39323 * 119.92867 * 359.97438 * 21 20 19 23 23 N 1.31091 * 121.72343 * 359.97438 * 22 21 20 24 24 C 1.33579 * 121.33426 * 0.02562 * 23 22 21 25 25 H 0.96995 * 120.00030 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47483 * 60.00142 * 10 9 7 27 27 H 1.08999 * 109.47135 * 299.99797 * 10 9 7 28 28 H 0.97002 * 120.00350 * 5.52388 * 13 11 10 29 29 H 1.08004 * 119.57719 * 0.26929 * 15 14 13 30 30 H 1.07997 * 119.52582 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.91987 * 359.95560 * 20 19 17 32 32 H 1.08008 * 120.03547 * 179.97438 * 21 20 19 33 33 H 1.08002 * 119.13454 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8444 -6.3430 0.0022 14 6 2.3588 -7.6483 -0.1146 15 6 1.1458 -7.8853 -0.7231 16 6 0.6484 -9.1794 -0.8429 17 6 1.3459 -10.2459 -0.3596 18 35 0.6458 -11.9937 -0.5353 19 6 2.5864 -10.0446 0.2682 20 6 3.3320 -11.1247 0.7775 21 6 4.5302 -10.8557 1.3751 22 6 4.9821 -9.5410 1.4661 23 7 4.2852 -8.5381 0.9896 24 6 3.1057 -8.7328 0.3936 25 1 -0.4850 0.8400 -0.0004 26 1 3.1239 -3.7310 0.8924 27 1 3.1253 -3.7317 -0.8875 28 1 3.7981 -6.1859 0.0837 29 1 0.5741 -7.0562 -1.1134 30 1 -0.3048 -9.3407 -1.3242 31 1 2.9663 -12.1378 0.6982 32 1 5.1269 -11.6615 1.7768 33 1 5.9313 -9.3429 1.9416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253393171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:40 Heat of formation + Delta-G solvation = 27.243107 kcal Electronic energy + Delta-G solvation = -20709.928440 eV Core-core repulsion = 17294.252649 eV Total energy + Delta-G solvation = -3415.675791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 365.978 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38196 -39.68312 -37.21050 -35.32213 -33.02811 -32.48321 -31.50493 -30.89809 -29.91207 -27.77628 -25.53993 -24.59246 -24.10551 -22.28430 -20.48133 -18.63266 -18.37116 -17.61259 -17.21799 -16.39499 -15.91388 -15.50730 -14.84932 -14.76150 -14.61269 -14.34264 -14.17145 -13.70587 -13.55942 -13.28111 -12.70203 -12.60239 -12.50173 -12.30509 -11.89651 -11.41965 -11.10236 -11.07059 -10.82524 -10.51219 -10.43145 -9.99019 -9.97444 -9.89663 -9.53606 -9.10862 -9.09208 -8.34999 -7.84896 -6.58374 -6.27077 -3.99016 0.00358 0.49892 1.33457 1.53508 2.51079 2.74738 2.90288 3.20916 3.22745 3.26479 3.50042 3.76235 3.89305 4.14543 4.39065 4.40640 4.52868 4.63201 4.77302 5.03237 5.08481 5.10141 5.22893 5.40170 5.55949 5.62959 5.68909 5.74251 5.85326 5.92828 6.01719 6.13641 6.30224 6.66565 7.35592 7.53423 7.54596 8.21802 8.29788 9.18374 10.80306 Molecular weight = 365.98amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002167 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.341297 B =12917.086524 C =14103.083272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.055 6.055 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.490 6.490 13 N -0.661 5.661 14 C 0.209 3.791 15 C -0.136 4.136 16 C -0.038 4.038 17 C -0.113 4.113 18 Br -0.049 7.049 19 C -0.057 4.057 20 C -0.066 4.066 21 C -0.163 4.163 22 C 0.125 3.875 23 N -0.465 5.465 24 C 0.107 3.893 25 H 0.270 0.730 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.420 0.580 29 H 0.167 0.833 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 -27.247 -0.117 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.172 5.828 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.363 6.363 13 N -0.304 5.304 14 C 0.109 3.891 15 C -0.160 4.160 16 C -0.059 4.059 17 C -0.194 4.194 18 Br 0.037 6.963 19 C -0.062 4.062 20 C -0.092 4.092 21 C -0.182 4.182 22 C -0.048 4.048 23 N -0.172 5.172 24 C -0.017 4.017 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.257 0.743 29 H 0.184 0.816 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.863 -27.065 -0.169 27.693 hybrid contribution 2.332 0.798 0.134 2.468 sum 8.194 -26.267 -0.034 27.515 Atomic orbital electron populations 1.69996 1.05965 1.27711 1.46558 1.24994 0.95046 0.99075 0.94390 0.86205 0.79234 0.81106 0.78858 1.19887 1.20778 1.19885 1.22811 0.94926 0.91451 1.59396 0.90811 1.85388 1.04267 0.96361 1.96791 1.23559 1.07163 0.94088 1.05640 1.20669 0.86382 0.86371 0.74585 1.90673 1.15241 1.85042 1.45313 1.43660 1.12030 1.03159 1.71519 1.17666 0.93728 0.83496 0.94232 1.21483 0.96298 0.97970 1.00224 1.20860 0.99055 0.90634 0.95325 1.21377 0.97433 0.91700 1.08894 1.96656 1.85140 1.17347 1.97200 1.18255 0.94443 0.93861 0.99596 1.21613 0.93996 0.98941 0.94698 1.21917 0.97151 0.98597 1.00571 1.22939 0.98710 0.88155 0.95027 1.67848 1.05168 1.35316 1.08917 1.18452 0.93119 0.90739 0.99372 0.92033 0.88557 0.88463 0.74272 0.81589 0.84048 0.83735 0.84184 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.05 -1.42 20.57 -107.50 -2.21 -3.63 16 10 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 11 C 0.53 9.51 7.65 -10.99 -0.08 9.42 16 12 O -0.49 -10.21 13.04 5.55 0.07 -10.14 16 13 N -0.66 -9.52 5.28 -9.61 -0.05 -9.57 16 14 C 0.21 2.98 6.47 -83.31 -0.54 2.44 16 15 C -0.14 -1.91 8.69 -39.42 -0.34 -2.25 16 16 C -0.04 -0.45 9.67 -39.94 -0.39 -0.83 16 17 C -0.11 -1.28 6.22 -39.44 -0.25 -1.52 16 18 Br -0.05 -0.45 32.02 -68.01 -2.18 -2.63 16 19 C -0.06 -0.67 5.74 -106.80 -0.61 -1.28 16 20 C -0.07 -0.60 9.48 -39.22 -0.37 -0.97 16 21 C -0.16 -1.21 10.03 -39.78 -0.40 -1.61 16 22 C 0.12 1.08 11.15 -17.46 -0.19 0.89 16 23 N -0.46 -5.54 9.78 -10.87 -0.11 -5.64 16 24 C 0.11 1.41 6.62 -84.70 -0.56 0.85 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 27 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.42 5.11 8.37 -40.82 -0.34 4.77 16 29 H 0.17 2.59 5.75 -52.48 -0.30 2.29 16 30 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.15 1.07 6.78 -52.49 -0.36 0.72 16 32 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -32.88 325.12 -9.84 -42.72 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -2.66 Total: 3.16 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.32 Total: -10.25 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.58 Total: -40.14 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.18 Total: -2.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.88 -9.84 -42.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253393171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.961 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds