Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35946 * 116.99772 * 2 1 4 4 C 1.37923 * 120.05431 * 359.97438 * 3 2 1 5 5 C 1.40380 * 119.69431 * 179.97438 * 4 3 2 6 6 C 1.46246 * 120.10481 * 180.02562 * 5 4 3 7 7 N 1.31745 * 120.00135 * 179.97438 * 6 5 4 8 8 N 1.29001 * 120.00289 * 180.02562 * 7 6 5 9 9 C 1.32065 * 120.00079 * 179.97438 * 8 7 6 10 10 C 1.47769 * 127.48474 * 359.97438 * 9 8 7 11 11 C 1.39241 * 133.23975 * 359.97438 * 10 9 8 12 12 C 1.37998 * 119.71323 * 179.97438 * 11 10 9 13 13 C 1.38529 * 120.09253 * 0.02562 * 12 11 10 14 14 C 1.38046 * 120.65840 * 0.02562 * 13 12 11 15 15 C 1.39024 * 120.13873 * 359.95678 * 14 13 12 16 16 N 1.39005 * 131.68732 * 180.02562 * 15 14 13 17 17 C 1.34387 * 111.37195 * 179.72574 * 16 15 14 18 18 O 1.21711 * 126.03991 * 180.26164 * 17 16 15 19 19 C 1.40411 * 119.79165 * 0.02562 * 5 4 3 20 20 C 1.36464 * 120.09912 * 0.25204 * 19 5 4 21 21 C 1.39228 * 120.31217 * 359.49417 * 20 19 5 22 22 O 1.35479 * 119.89655 * 180.25548 * 21 20 19 23 23 C 1.34620 * 117.00006 * 354.37577 * 22 21 20 24 24 H 1.08002 * 119.99645 * 5.05911 * 23 22 21 25 25 C 1.38919 * 119.99847 * 185.06486 * 23 22 21 26 26 N 1.31376 * 119.99671 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00221 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47151 * 89.99933 * 27 25 23 29 29 H 1.48504 * 109.47150 * 210.00380 * 27 25 23 30 30 H 1.48507 * 109.47046 * 330.00137 * 27 25 23 31 31 H 1.08995 * 109.46848 * 300.00179 * 1 2 3 32 32 H 1.08994 * 109.46934 * 60.00314 * 1 2 3 33 33 H 1.09003 * 109.46934 * 180.02562 * 1 2 3 34 34 H 1.08003 * 120.15374 * 0.02562 * 4 3 2 35 35 H 1.08007 * 119.99808 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.14606 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.95217 * 179.97438 * 12 11 10 38 38 H 1.07997 * 119.66695 * 179.97438 * 13 12 11 39 39 H 1.07995 * 119.93338 * 179.97438 * 14 13 12 40 40 H 0.96996 * 124.30759 * 0.02562 * 16 15 14 41 41 H 1.07991 * 119.94778 * 179.97438 * 19 5 4 42 42 H 1.07996 * 119.84324 * 179.74610 * 20 19 5 43 43 H 0.97002 * 119.99726 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2960 2.3687 -0.0005 5 6 1.9411 3.6155 0.0000 6 6 1.1545 4.8484 0.0000 7 7 1.7621 6.0174 0.0010 8 7 1.0683 7.1050 0.0016 9 6 1.6773 8.2768 0.0031 10 6 3.1324 8.5339 0.0049 11 6 4.2483 7.7010 0.0060 12 6 5.5134 8.2524 0.0072 13 6 5.6712 9.6286 0.0078 14 6 4.5717 10.4633 0.0077 15 6 3.2888 9.9277 0.0062 16 7 2.0357 10.5296 0.0054 17 6 1.0525 9.6135 -0.0021 18 8 -0.1423 9.8455 -0.0090 19 6 3.3439 3.6751 0.0006 20 6 4.0778 2.5246 -0.0046 21 6 3.4424 1.2858 0.0001 22 8 4.1793 0.1489 0.0001 23 6 5.5130 0.2851 -0.1221 24 1 5.9566 1.2698 -0.1322 25 6 6.3187 -0.8409 -0.2354 26 7 7.6203 -0.7080 -0.3542 27 14 5.5515 -2.5440 -0.2174 28 1 5.2153 -2.9502 -1.6056 29 1 6.5141 -3.5145 0.3631 30 1 4.3150 -2.5212 0.6048 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 0.2173 2.3161 -0.0005 35 1 0.0755 4.8006 -0.0008 36 1 4.1243 6.6282 0.0060 37 1 6.3815 7.6100 0.0085 38 1 6.6645 10.0527 0.0091 39 1 4.7084 11.5346 0.0086 40 1 1.8898 11.4885 0.0054 41 1 3.8428 4.6329 0.0006 42 1 5.1566 2.5753 -0.0084 43 1 8.1829 -1.4943 -0.4329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254400008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = 40.179492 kcal Electronic energy + Delta-G solvation = -30500.938329 eV Core-core repulsion = 26093.482923 eV Total energy + Delta-G solvation = -4407.455406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.121 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.54798 -40.06959 -38.42369 -38.16392 -38.06538 -36.46256 -35.75901 -33.18307 -32.77366 -30.97624 -30.07343 -29.63335 -28.93715 -27.20724 -26.36666 -25.44679 -23.22324 -22.68052 -22.00648 -21.66779 -20.64167 -19.27928 -18.38742 -18.09900 -17.85936 -17.12318 -16.75848 -16.28243 -15.83784 -15.82662 -15.50167 -15.48306 -14.84371 -14.72086 -14.38518 -14.14637 -14.07456 -13.98730 -13.82425 -13.75059 -13.53887 -13.05353 -12.76903 -12.55854 -12.41449 -12.19171 -11.95105 -11.74261 -11.44373 -11.19086 -11.11328 -11.04038 -10.93561 -10.92154 -10.47397 -10.41165 -9.86312 -9.82046 -9.24087 -8.69614 -8.54273 -8.31772 -8.07938 -7.15745 -6.85929 -4.36591 -0.35483 1.13897 1.22040 1.81756 1.96816 2.59759 2.65919 3.02821 3.07414 3.22834 3.44889 3.56778 3.67459 3.78650 3.94645 4.22824 4.23797 4.31271 4.61559 4.72666 4.73647 4.90018 5.03334 5.12020 5.20540 5.26486 5.31027 5.32979 5.41062 5.55033 5.60921 5.65740 5.85214 5.86938 5.91626 5.97505 6.21897 6.27052 6.35226 6.45233 6.46155 6.57265 6.74438 6.84856 6.93107 7.13426 7.19673 7.27391 7.53973 7.77804 7.81538 8.44695 8.52091 9.07522 10.17694 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.002290 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.621220 B =12225.016686 C =14555.970448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.049 3.951 4 C -0.119 4.119 5 C -0.173 4.173 6 C 0.273 3.727 7 N -0.427 5.427 8 N -0.232 5.232 9 C 0.089 3.911 10 C -0.132 4.132 11 C -0.034 4.034 12 C -0.147 4.147 13 C -0.078 4.078 14 C -0.145 4.145 15 C 0.147 3.853 16 N -0.651 5.651 17 C 0.581 3.419 18 O -0.491 6.491 19 C -0.014 4.014 20 C -0.222 4.222 21 C 0.165 3.835 22 O -0.170 6.170 23 C -0.380 4.380 24 H 0.117 0.883 25 C 0.069 3.931 26 N -0.845 5.845 27 Si 0.907 3.093 28 H -0.268 1.268 29 H -0.277 1.277 30 H -0.251 1.251 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.421 0.579 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 13.594 0.611 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.003 3.997 4 C -0.140 4.140 5 C -0.178 4.178 6 C 0.092 3.908 7 N -0.254 5.254 8 N -0.054 5.054 9 C -0.088 4.088 10 C -0.138 4.138 11 C -0.054 4.054 12 C -0.166 4.166 13 C -0.097 4.097 14 C -0.166 4.166 15 C 0.047 3.953 16 N -0.296 5.296 17 C 0.367 3.633 18 O -0.361 6.361 19 C -0.035 4.035 20 C -0.242 4.242 21 C 0.106 3.894 22 O -0.069 6.069 23 C -0.454 4.454 24 H 0.135 0.865 25 C -0.140 4.140 26 N -0.477 5.477 27 Si 0.730 3.270 28 H -0.193 1.193 29 H -0.202 1.202 30 H -0.175 1.175 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.260 0.740 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.659 13.020 0.604 14.636 hybrid contribution -0.378 0.031 -0.024 0.380 sum -7.037 13.051 0.581 14.838 Atomic orbital electron populations 1.22954 0.79679 1.03311 1.00741 1.86175 1.20033 1.26135 1.89923 1.17911 0.89079 0.84677 1.07993 1.20851 0.98780 0.90474 1.03936 1.17850 0.92986 0.89688 1.17297 1.24687 0.96563 0.89833 0.79717 1.70944 1.34781 0.95875 1.23780 1.70332 1.35030 0.96638 1.03421 1.22536 0.89967 0.91622 1.04631 1.19572 0.93619 0.92444 1.08150 1.20993 0.90116 1.00648 0.93633 1.21170 0.97228 0.95121 1.03067 1.20992 0.98003 0.93418 0.97323 1.20208 0.88988 1.00089 1.07301 1.18328 0.86074 0.91813 0.99042 1.43034 1.04887 1.09886 1.71750 1.17712 0.84756 0.84801 0.76037 1.90896 1.13409 1.84359 1.47481 1.20865 0.92287 0.97941 0.92375 1.20747 1.01509 0.90437 1.11513 1.18782 0.87648 0.86784 0.96138 1.83486 1.20737 1.28388 1.74252 1.21134 0.77064 0.97576 1.49608 0.86543 1.24651 0.94543 1.00201 0.94630 1.69547 1.03401 1.32833 1.41951 0.86131 0.80097 0.80759 0.79974 1.19264 1.20249 1.17476 0.93163 0.93135 0.88847 0.85318 0.87681 0.84078 0.85022 0.85200 0.85583 0.73989 0.85571 0.83671 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.44 10.28 -34.08 -0.35 -5.79 16 3 C 0.05 0.88 6.70 -39.10 -0.26 0.62 16 4 C -0.12 -1.80 8.79 -38.89 -0.34 -2.14 16 5 C -0.17 -2.70 5.87 -105.06 -0.62 -3.32 16 6 C 0.27 4.01 10.77 -14.37 -0.15 3.86 16 7 N -0.43 -6.93 8.36 32.18 0.27 -6.66 16 8 N -0.23 -3.93 11.04 34.77 0.38 -3.55 16 9 C 0.09 1.39 7.53 -80.07 -0.60 0.79 16 10 C -0.13 -1.81 6.16 -104.87 -0.65 -2.46 16 11 C -0.03 -0.43 9.67 -39.30 -0.38 -0.81 16 12 C -0.15 -1.51 10.04 -39.56 -0.40 -1.91 16 13 C -0.08 -0.67 10.01 -39.54 -0.40 -1.07 16 14 C -0.14 -1.27 10.06 -39.36 -0.40 -1.66 16 15 C 0.15 1.64 7.17 -83.56 -0.60 1.04 16 16 N -0.65 -6.94 5.92 -10.71 -0.06 -7.00 16 17 C 0.58 8.44 8.51 -12.64 -0.11 8.34 16 18 O -0.49 -8.36 18.05 5.18 0.09 -8.27 16 19 C -0.01 -0.24 9.53 -39.40 -0.38 -0.61 16 20 C -0.22 -4.19 9.09 -39.85 -0.36 -4.55 16 21 C 0.16 3.42 6.68 -38.62 -0.26 3.16 16 22 O -0.17 -4.04 8.35 -13.04 -0.11 -4.14 16 23 C -0.38 -9.45 9.95 30.98 0.31 -9.15 16 24 H 0.12 2.90 5.41 -52.49 -0.28 2.62 16 25 C 0.07 1.71 5.50 -17.49 -0.10 1.62 16 26 N -0.84 -21.67 13.95 55.49 0.77 -20.89 16 27 Si 0.91 19.56 28.62 -169.99 -4.87 14.70 16 28 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 29 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 30 H -0.25 -5.55 7.11 56.52 0.40 -5.15 16 31 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.13 1.52 6.29 -52.48 -0.33 1.19 16 35 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.14 1.93 5.57 -52.49 -0.29 1.64 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.42 3.04 8.96 -40.82 -0.37 2.68 16 41 H 0.13 1.92 6.08 -52.49 -0.32 1.60 16 42 H 0.15 2.78 5.61 -52.49 -0.29 2.49 16 43 H 0.29 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -30.22 379.67 -6.77 -36.99 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.93 Total: 5.84 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -4.69 Total: -6.93 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 1.36 Total: -38.11 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.37 Total: -18.20 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.87 Total: 14.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.22 -6.77 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254400008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.165 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds