Wall clock time and date at job start Tue Mar 31 2020 06:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 C 1.53000 * 109.47389 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47453 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99935 * 179.97438 * 5 4 3 7 7 S 1.71203 * 120.00046 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99717 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00216 * 0.02562 * 8 6 5 10 10 N 1.40104 * 119.99816 * 180.02562 * 8 6 5 11 11 C 1.29830 * 119.99957 * 179.97438 * 10 8 6 12 12 C 1.47358 * 120.00192 * 179.97438 * 11 10 8 13 13 C 1.39829 * 120.06447 * 0.02562 * 12 11 10 14 14 C 1.37765 * 120.01678 * 180.02562 * 13 12 11 15 15 C 1.38966 * 120.14575 * 359.97438 * 14 13 12 16 16 O 1.35693 * 119.93530 * 179.97438 * 15 14 13 17 17 C 1.34787 * 117.00362 * 354.37836 * 16 15 14 18 18 H 1.08004 * 119.99804 * 5.06862 * 17 16 15 19 19 C 1.38609 * 120.00631 * 185.06228 * 17 16 15 20 20 N 1.31580 * 120.00335 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99686 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47244 * 89.99429 * 21 19 17 23 23 H 1.48504 * 109.47141 * 209.99696 * 21 19 17 24 24 H 1.48500 * 109.46890 * 329.99520 * 21 19 17 25 25 C 1.39538 * 120.12728 * 359.97438 * 15 14 13 26 26 O 1.35943 * 120.00427 * 179.97438 * 25 15 14 27 27 C 1.42900 * 116.99808 * 180.02562 * 26 25 15 28 28 C 1.38190 * 119.98673 * 0.25591 * 25 15 14 29 29 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47052 * 300.00256 * 1 2 3 31 31 H 1.09000 * 109.47117 * 60.00539 * 1 2 3 32 32 H 1.08991 * 109.47782 * 239.99843 * 2 1 3 33 33 H 1.09005 * 109.46792 * 119.99101 * 2 1 3 34 34 H 1.09003 * 109.47372 * 59.99434 * 3 2 1 35 35 H 1.09003 * 109.47263 * 299.99603 * 3 2 1 36 36 H 1.09003 * 109.47050 * 59.99575 * 4 3 2 37 37 H 1.09003 * 109.46870 * 300.00181 * 4 3 2 38 38 H 0.96994 * 119.99509 * 0.02562 * 5 4 3 39 39 H 1.08996 * 109.46758 * 269.99785 * 9 8 6 40 40 H 1.08999 * 109.46879 * 29.99775 * 9 8 6 41 41 H 1.09000 * 109.46726 * 149.99688 * 9 8 6 42 42 H 1.08006 * 120.00054 * 0.02562 * 11 10 8 43 43 H 1.07999 * 119.99173 * 0.02562 * 13 12 11 44 44 H 1.08000 * 119.93218 * 179.97438 * 14 13 12 45 45 H 0.97001 * 119.99992 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.47452 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47514 * 60.00448 * 27 26 25 48 48 H 1.08998 * 109.47061 * 300.00034 * 27 26 25 49 49 H 1.07998 * 120.07368 * 179.74508 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 6 5.3834 3.0702 0.0010 7 16 6.4959 1.7689 0.0022 8 7 5.8325 4.3408 0.0009 9 6 4.8805 5.4544 0.0004 10 7 7.2100 4.5969 0.0013 11 6 7.6427 5.8209 0.0008 12 6 9.0915 6.0903 0.0018 13 6 10.0014 5.0286 0.0028 14 6 11.3556 5.2815 0.0043 15 6 11.8210 6.5909 0.0043 16 8 13.1558 6.8352 0.0063 17 6 13.9727 5.7698 0.1259 18 1 13.5607 4.7714 0.1321 19 6 15.3415 5.9553 0.2407 20 7 16.1390 4.9152 0.3569 21 14 16.0541 7.6821 0.2304 22 1 16.1178 8.1996 1.6208 23 1 17.4210 7.6501 -0.3491 24 1 15.1898 8.5693 -0.5889 25 6 10.9183 7.6550 0.0022 26 8 11.3763 8.9350 0.0027 27 6 10.3961 9.9747 0.0010 28 6 9.5588 7.4075 0.0055 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8909 38 1 3.4279 3.5610 -0.0003 39 1 4.6448 5.7303 -1.0274 40 1 3.9678 5.1522 0.5140 41 1 5.3207 6.3089 0.5143 42 1 6.9408 6.6419 0.0004 43 1 9.6424 4.0100 0.0025 44 1 12.0572 4.4604 0.0055 45 1 17.0969 5.0451 0.4376 46 1 10.8945 10.9441 0.0012 47 1 9.7716 9.8869 0.8901 48 1 9.7743 9.8865 -0.8899 49 1 8.8589 8.2300 0.0080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254832710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:27 Heat of formation + Delta-G solvation = 33.884658 kcal Electronic energy + Delta-G solvation = -29022.167018 eV Core-core repulsion = 24885.715693 eV Total energy + Delta-G solvation = -4136.451325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.94816 -39.69782 -37.84109 -37.64639 -36.43632 -35.08670 -32.94799 -32.41733 -29.94156 -29.70405 -29.27220 -28.26302 -26.80975 -25.55631 -24.23379 -23.26563 -22.31646 -21.80949 -21.37022 -19.99586 -18.55425 -18.20924 -17.92006 -17.65379 -16.48305 -16.28814 -15.97980 -15.72789 -15.38068 -15.34274 -15.06570 -14.51715 -14.34193 -14.26567 -14.08871 -13.90529 -13.77910 -13.36781 -13.17482 -12.90114 -12.84957 -12.53621 -12.37017 -12.23431 -11.79468 -11.69995 -11.69262 -11.62872 -11.35181 -11.17456 -11.09361 -11.00379 -10.90571 -10.86489 -10.43737 -10.29087 -10.13891 -9.52386 -9.18455 -8.85187 -8.08429 -7.72803 -7.18918 -7.05812 -6.52369 -4.12844 0.83054 1.59654 1.60955 2.07531 2.34979 2.78941 2.87805 3.20730 3.24917 3.41738 3.77274 4.13274 4.19114 4.22502 4.38401 4.39482 4.42958 4.49549 4.58068 4.63838 4.74953 4.86443 4.89806 4.96658 5.00938 5.10735 5.24425 5.26082 5.36071 5.36200 5.36722 5.47520 5.54933 5.63405 5.66448 5.70567 5.78855 5.83239 5.96555 6.03684 6.11393 6.23468 6.40656 6.73036 6.91854 6.98546 7.16202 7.37354 7.55951 7.81771 7.85639 8.00556 8.80766 9.41183 10.53236 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.001716 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.388338 B =16316.966226 C =17877.645569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.125 3.875 5 N -0.690 5.690 6 C 0.575 3.425 7 S -0.597 6.597 8 N -0.438 5.438 9 C 0.024 3.976 10 N -0.229 5.229 11 C 0.152 3.848 12 C -0.139 4.139 13 C -0.034 4.034 14 C -0.212 4.212 15 C 0.160 3.840 16 O -0.189 6.189 17 C -0.386 4.386 18 H 0.113 0.887 19 C 0.067 3.933 20 N -0.864 5.864 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.254 1.254 25 C 0.050 3.950 26 O -0.308 6.308 27 C 0.030 3.970 28 C -0.132 4.132 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.133 0.867 44 H 0.146 0.854 45 H 0.283 0.717 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.048 0.952 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.377 3.032 -0.621 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.171 4.171 4 C 0.001 3.999 5 N -0.324 5.324 6 C 0.220 3.780 7 S -0.468 6.468 8 N -0.234 5.234 9 C -0.124 4.124 10 N -0.033 5.033 11 C -0.056 4.056 12 C -0.144 4.144 13 C -0.055 4.055 14 C -0.231 4.231 15 C 0.104 3.896 16 O -0.091 6.091 17 C -0.461 4.461 18 H 0.130 0.870 19 C -0.139 4.139 20 N -0.500 5.500 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.178 1.178 25 C 0.005 3.995 26 O -0.222 6.222 27 C -0.066 4.066 28 C -0.153 4.153 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.230 0.770 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -29.011 1.344 -0.617 29.049 hybrid contribution -1.282 2.664 0.047 2.956 sum -30.293 4.007 -0.570 30.562 Atomic orbital electron populations 1.21765 0.95445 1.01987 1.01779 1.21409 0.96036 0.95347 1.03088 1.21878 0.93860 0.98753 1.02641 1.21750 0.93065 0.80006 1.05061 1.45208 1.03283 1.10684 1.73198 1.21617 0.87398 0.87764 0.81193 1.93387 1.52647 1.30297 1.70449 1.47551 1.03791 1.03478 1.68584 1.22472 0.94052 0.92292 1.03591 1.75970 0.88561 1.20272 1.18463 1.24653 0.96282 0.92300 0.92323 1.17427 0.88177 0.92865 1.15908 1.21137 0.91809 0.98828 0.93719 1.21051 0.96047 0.95802 1.10229 1.18633 0.83716 0.91056 0.96177 1.83598 1.11861 1.36243 1.77397 1.20933 0.88038 0.86442 1.50710 0.86983 1.24514 0.94735 0.99494 0.95140 1.69660 1.05065 1.30059 1.45167 0.86169 0.78219 0.83098 0.79537 1.19678 1.20657 1.17794 1.17906 0.90676 0.82931 1.08028 1.86191 1.34034 1.11988 1.89986 1.22913 0.92951 0.90254 1.00446 1.20624 0.92883 0.96002 1.05829 0.92389 0.92737 0.92740 0.91246 0.91251 0.91379 0.91350 0.89431 0.89452 0.77017 0.90649 0.90228 0.89018 0.87162 0.84895 0.83686 0.90688 0.89018 0.93372 0.93389 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.54 5.93 -26.73 -0.16 -0.70 16 3 C -0.13 -0.59 5.33 -26.73 -0.14 -0.73 16 4 C 0.12 0.94 5.13 -4.04 -0.02 0.91 16 5 N -0.69 -5.73 5.42 -62.03 -0.34 -6.07 16 6 C 0.57 7.54 7.78 -86.92 -0.68 6.86 16 7 S -0.60 -10.97 28.45 -107.50 -3.06 -14.02 16 8 N -0.44 -5.33 3.90 -68.83 -0.27 -5.60 16 9 C 0.02 0.15 9.65 59.85 0.58 0.73 16 10 N -0.23 -3.51 9.63 32.14 0.31 -3.20 16 11 C 0.15 2.03 10.15 -14.69 -0.15 1.88 16 12 C -0.14 -2.27 5.87 -105.02 -0.62 -2.88 16 13 C -0.03 -0.65 9.57 -39.16 -0.37 -1.02 16 14 C -0.21 -4.53 9.14 -39.48 -0.36 -4.89 16 15 C 0.16 3.64 6.67 -38.83 -0.26 3.38 16 16 O -0.19 -4.94 8.35 -14.27 -0.12 -5.06 16 17 C -0.39 -10.66 9.94 30.87 0.31 -10.35 16 18 H 0.11 3.14 5.42 -52.48 -0.28 2.86 16 19 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 20 N -0.86 -24.42 13.96 55.48 0.77 -23.64 16 21 Si 0.90 21.39 28.62 -169.99 -4.86 16.53 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.25 -6.11 7.11 56.52 0.40 -5.70 16 25 C 0.05 0.96 6.70 -39.11 -0.26 0.70 16 26 O -0.31 -5.76 10.28 -34.18 -0.35 -6.11 16 27 C 0.03 0.36 9.81 101.05 0.99 1.35 16 28 C -0.13 -2.06 8.77 -39.03 -0.34 -2.40 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.78 7.99 -51.93 -0.42 0.37 16 37 H 0.09 0.78 7.99 -51.93 -0.41 0.36 16 38 H 0.39 1.97 6.20 -40.82 -0.25 1.72 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.30 6.36 -51.93 -0.33 -0.03 16 41 H 0.09 0.50 6.19 -51.93 -0.32 0.18 16 42 H 0.11 1.01 5.91 -52.48 -0.31 0.70 16 43 H 0.13 2.56 7.54 -52.49 -0.40 2.16 16 44 H 0.15 3.25 5.62 -52.49 -0.29 2.96 16 45 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 48 H 0.05 0.49 7.67 -51.93 -0.40 0.10 16 49 H 0.12 1.44 6.28 -52.49 -0.33 1.11 16 LS Contribution 418.21 15.07 6.30 6.30 Total: -1.00 -35.30 418.21 -9.91 -45.21 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.09 Total: 1.30 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.22 Total: -5.64 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.48 Total: -38.51 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.47 Total: -11.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.53 kcal Atomic # 16 Polarization: -10.97 SS G_CDS: -3.06 Total: -14.02 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.30 -9.91 -45.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254832710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.093 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds