Wall clock time and date at job start Tue Mar 31 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99777 * 2 1 4 4 C 1.53003 * 109.46923 * 306.17422 * 3 2 1 5 5 C 1.50698 * 109.47026 * 186.17432 * 3 2 1 6 6 O 1.21279 * 119.99619 * 220.03246 * 5 3 2 7 7 N 1.34777 * 120.00412 * 40.03236 * 5 3 2 8 8 C 1.46957 * 120.59553 * 185.04223 * 7 5 3 9 9 C 1.53367 * 108.63671 * 235.24458 * 8 7 5 10 10 N 1.46969 * 108.63379 * 310.57730 * 9 8 7 11 11 C 1.34778 * 120.59331 * 235.19847 * 10 9 8 12 12 O 1.21684 * 120.00170 * 5.19346 * 11 10 9 13 13 C 1.46373 * 119.99636 * 185.19273 * 11 10 9 14 14 H 1.07998 * 120.00476 * 354.93456 * 13 11 10 15 15 C 1.40056 * 119.99666 * 174.94121 * 13 11 10 16 16 N 1.30669 * 119.99705 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 119.99823 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47019 * 269.99490 * 17 15 13 19 19 H 1.48502 * 109.47389 * 29.99715 * 17 15 13 20 20 H 1.48504 * 109.47158 * 149.99796 * 17 15 13 21 21 C 1.46963 * 118.81203 * 55.47549 * 10 9 8 22 22 C 1.46965 * 120.58823 * 5.06202 * 7 5 3 23 23 C 1.50700 * 109.46839 * 66.17000 * 3 2 1 24 24 C 1.38218 * 120.01489 * 6.21923 * 23 3 2 25 25 C 1.38225 * 120.02575 * 179.97438 * 24 23 3 26 26 C 1.38263 * 120.04997 * 0.02562 * 25 24 23 27 27 C 1.38178 * 120.03053 * 0.02562 * 26 25 24 28 28 C 1.38441 * 120.01080 * 185.93326 * 23 3 2 29 29 F 1.35099 * 120.02471 * 0.02562 * 28 23 3 30 30 H 1.09004 * 109.46715 * 185.84339 * 1 2 3 31 31 H 1.09001 * 109.47431 * 305.84538 * 1 2 3 32 32 H 1.09003 * 109.47456 * 65.85442 * 1 2 3 33 33 H 1.08998 * 109.46976 * 300.00133 * 4 3 2 34 34 H 1.09000 * 109.46990 * 59.99797 * 4 3 2 35 35 H 1.09002 * 109.46916 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.61159 * 115.50067 * 8 7 5 37 37 H 1.09003 * 109.75070 * 355.07213 * 8 7 5 38 38 H 1.08999 * 109.61507 * 190.83037 * 9 8 7 39 39 H 1.09000 * 109.74852 * 70.40070 * 9 8 7 40 40 H 0.96997 * 120.00008 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.60801 * 64.26581 * 21 10 9 42 42 H 1.08999 * 109.60928 * 184.77569 * 21 10 9 43 43 H 1.09007 * 109.60568 * 244.49511 * 22 7 5 44 44 H 1.08997 * 109.61865 * 4.83232 * 22 7 5 45 45 H 1.08003 * 119.98604 * 359.97438 * 24 23 3 46 46 H 1.08002 * 119.97322 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.98799 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.01716 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4397 2.1177 -1.1645 5 6 3.5049 1.1899 -0.1528 6 8 4.2376 1.9149 0.4862 7 7 4.0275 0.2809 -0.9996 8 6 5.4813 0.0806 -1.0778 9 6 5.9237 0.2648 -2.5347 10 7 5.0499 -0.5436 -3.3966 11 6 5.5725 -1.4520 -4.2441 12 8 6.7685 -1.6763 -4.2337 13 6 4.7014 -2.1687 -5.1768 14 1 3.6313 -2.0307 -5.1310 15 6 5.2558 -3.0336 -6.1287 16 7 6.5506 -3.2003 -6.1844 17 14 4.1442 -3.9488 -7.3187 18 1 3.7521 -5.2530 -6.7263 19 1 2.9276 -3.1390 -7.5822 20 1 4.8692 -4.1822 -8.5935 21 6 3.5964 -0.3393 -3.3224 22 6 3.1537 -0.5275 -1.8615 23 6 1.6900 1.9978 1.2997 24 6 1.0489 1.3076 2.3111 25 6 0.7556 1.9422 3.5035 26 6 1.1026 3.2681 3.6858 27 6 1.7427 3.9606 2.6757 28 6 2.0433 3.3238 1.4833 29 9 2.6746 3.9979 0.4974 30 1 -0.3633 -1.0224 0.1046 31 1 -0.3634 0.6018 0.8330 32 1 -0.3634 0.4204 -0.9378 33 1 1.6712 1.6169 -2.1045 34 1 0.3586 2.2012 -1.0539 35 1 1.8827 3.1136 -1.1642 36 1 5.7302 -0.9270 -0.7446 37 1 5.9882 0.8104 -0.4465 38 1 6.9563 -0.0653 -2.6481 39 1 5.8427 1.3153 -2.8142 40 1 6.9346 -3.7996 -6.8434 41 1 3.3513 0.6695 -3.6546 42 1 3.0917 -1.0685 -3.9561 43 1 3.2370 -1.5783 -1.5840 44 1 2.1207 -0.1994 -1.7458 45 1 0.7770 0.2720 2.1697 46 1 0.2550 1.4020 4.2934 47 1 0.8726 3.7631 4.6177 48 1 2.0133 4.9964 2.8182 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294678148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:48 Heat of formation + Delta-G solvation = -94.801846 kcal Electronic energy + Delta-G solvation = -34749.886156 eV Core-core repulsion = 30107.067300 eV Total energy + Delta-G solvation = -4642.818856 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.163 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -48.99410 -41.02964 -39.21486 -38.01642 -37.72542 -35.81436 -33.04379 -32.78807 -32.46946 -31.20280 -30.79986 -29.57411 -27.87027 -27.19565 -26.00380 -24.16399 -23.34895 -23.00172 -22.54564 -21.29032 -19.96407 -18.71620 -18.02817 -17.67374 -16.84119 -16.46528 -16.10401 -15.94880 -15.77747 -15.63010 -15.47620 -15.10883 -14.88372 -14.59646 -14.47669 -14.29682 -14.11145 -13.93611 -13.52815 -13.25957 -13.17885 -12.86727 -12.67662 -12.58349 -12.42413 -12.16257 -11.97504 -11.77936 -11.72549 -11.59825 -11.36058 -11.14256 -11.08237 -11.00425 -10.89305 -10.72672 -10.26488 -10.10547 -9.93992 -9.69403 -9.16643 -8.92293 -8.86097 -8.57466 -7.64069 -7.21750 -6.24584 -4.70167 0.85908 0.96780 2.48773 3.02854 3.10335 3.17397 3.20111 3.36987 3.45915 4.04174 4.05941 4.17798 4.38451 4.49699 4.53690 4.56922 4.59727 4.73349 4.98390 5.03662 5.06461 5.14008 5.29628 5.32641 5.38763 5.41732 5.48286 5.53503 5.59124 5.64533 5.75826 5.77978 5.82572 5.87355 5.97345 6.00407 6.02400 6.11075 6.18510 6.31518 6.41585 6.56160 6.62386 6.67152 6.78282 7.39983 7.51294 7.58123 8.05984 8.22256 8.28378 8.96910 9.36470 10.52107 10.70527 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.002636 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.944184 B =10619.048727 C =11380.532258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.357 6.357 3 C 0.148 3.852 4 C -0.189 4.189 5 C 0.534 3.466 6 O -0.532 6.532 7 N -0.587 5.587 8 C 0.098 3.902 9 C 0.108 3.892 10 N -0.642 5.642 11 C 0.559 3.441 12 O -0.576 6.576 13 C -0.544 4.544 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.264 1.264 20 H -0.279 1.279 21 C 0.106 3.894 22 C 0.085 3.915 23 C -0.138 4.138 24 C -0.079 4.079 25 C -0.138 4.138 26 C -0.086 4.086 27 C -0.162 4.162 28 C 0.142 3.858 29 F -0.125 7.125 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.269 0.731 41 H 0.044 0.956 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.515 10.185 16.059 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.275 6.275 3 C 0.105 3.895 4 C -0.247 4.247 5 C 0.320 3.680 6 O -0.409 6.409 7 N -0.319 5.319 8 C -0.025 4.025 9 C -0.017 4.017 10 N -0.381 5.381 11 C 0.366 3.634 12 O -0.458 6.458 13 C -0.581 4.581 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.189 1.189 20 H -0.205 1.205 21 C -0.019 4.019 22 C -0.039 4.039 23 C -0.139 4.139 24 C -0.097 4.097 25 C -0.157 4.157 26 C -0.104 4.104 27 C -0.181 4.181 28 C 0.123 3.877 29 F -0.104 7.104 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.158 0.842 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.119 10.183 16.232 25.040 hybrid contribution -0.705 -0.156 -0.734 1.030 sum -16.824 10.026 15.498 24.976 Atomic orbital electron populations 1.23144 0.80797 1.03549 1.01377 1.88149 1.20386 1.24817 1.94193 1.20291 0.91986 0.84551 0.92718 1.22654 1.02236 1.02221 0.97545 1.19712 0.88167 0.80432 0.79724 1.90712 1.60064 1.43040 1.47089 1.47934 1.07855 1.37213 1.38878 1.22124 0.79414 1.02165 0.98759 1.21494 0.97366 0.94756 0.88050 1.48183 1.04363 1.42169 1.43404 1.18282 0.88099 0.77860 0.79205 1.90596 1.16574 1.67241 1.71413 1.20942 0.93563 1.26893 1.16668 0.90900 1.25732 0.94941 0.95505 0.97069 1.70007 1.11245 1.28742 1.29530 0.86388 0.80642 0.80099 0.79744 1.19686 1.18852 1.20459 1.21968 0.84155 1.01111 0.94667 1.22727 0.94673 0.96021 0.90454 1.19960 1.03359 0.93260 0.97365 1.21037 0.96478 1.00300 0.91871 1.21153 1.01913 0.95119 0.97474 1.21034 0.96685 0.94433 0.98294 1.21140 1.02753 1.01384 0.92804 1.17344 0.94314 0.89656 0.86433 1.91486 1.79345 1.79644 1.59892 0.88716 0.92681 0.92982 0.89861 0.90579 0.89464 0.91115 0.89042 0.88579 0.93519 0.92019 0.93740 0.87691 0.90867 0.87748 0.84178 0.85237 0.85064 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.19 101.05 0.93 0.98 16 2 O -0.36 -4.01 6.54 -35.23 -0.23 -4.25 16 3 C 0.15 1.87 0.43 -92.92 -0.04 1.83 16 4 C -0.19 -2.07 7.50 37.16 0.28 -1.79 16 5 C 0.53 8.71 6.49 -10.99 -0.07 8.64 16 6 O -0.53 -10.05 13.76 5.56 0.08 -9.97 16 7 N -0.59 -9.72 2.95 -172.22 -0.51 -10.23 16 8 C 0.10 1.75 6.59 -3.60 -0.02 1.72 16 9 C 0.11 2.18 6.60 -3.60 -0.02 2.16 16 10 N -0.64 -14.38 2.94 -173.88 -0.51 -14.89 16 11 C 0.56 15.56 7.62 -12.99 -0.10 15.46 16 12 O -0.58 -18.35 14.45 5.20 0.08 -18.27 16 13 C -0.54 -14.72 8.87 -35.63 -0.32 -15.04 16 14 H 0.07 1.76 5.66 -52.49 -0.30 1.47 16 15 C 0.09 2.37 5.50 -17.36 -0.10 2.28 16 16 N -0.77 -22.56 11.84 55.55 0.66 -21.91 16 17 Si 0.91 19.46 29.56 -169.99 -5.02 14.44 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C 0.11 1.90 6.51 -3.37 -0.02 1.87 16 22 C 0.08 1.30 5.30 -3.37 -0.02 1.28 16 23 C -0.14 -1.67 4.22 -104.55 -0.44 -2.11 16 24 C -0.08 -0.78 7.67 -39.59 -0.30 -1.08 16 25 C -0.14 -1.13 10.04 -39.58 -0.40 -1.52 16 26 C -0.09 -0.70 10.04 -39.59 -0.40 -1.09 16 27 C -0.16 -1.62 10.03 -39.51 -0.40 -2.02 16 28 C 0.14 1.79 6.16 -39.42 -0.24 1.55 16 29 F -0.13 -1.80 13.35 2.25 0.03 -1.77 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.37 5.27 -51.93 -0.27 0.10 16 32 H 0.05 0.34 6.68 -51.93 -0.35 0.00 16 33 H 0.08 0.90 6.54 -51.93 -0.34 0.56 16 34 H 0.08 0.65 6.61 -51.93 -0.34 0.31 16 35 H 0.09 1.05 5.86 -51.93 -0.30 0.74 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.58 7.00 -51.93 -0.36 1.22 16 38 H 0.10 2.12 6.99 -51.93 -0.36 1.75 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.90 5.34 -51.93 -0.28 1.62 16 43 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.10 1.33 3.66 -51.93 -0.19 1.14 16 45 H 0.14 1.22 5.78 -52.48 -0.30 0.91 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -36.12 374.02 -7.40 -43.52 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.92 Total: 4.59 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -1.68 Total: 13.11 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.36 Total: -47.03 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.08 Total: -32.49 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.12 -7.40 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294678148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.285 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds