Wall clock time and date at job start Tue Mar 31 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99805 * 2 1 4 4 C 1.52991 * 109.47164 * 53.74818 * 3 2 1 5 5 C 1.50703 * 109.47039 * 173.74946 * 3 2 1 6 6 O 1.21284 * 120.00124 * 132.35320 * 5 3 2 7 7 N 1.34775 * 119.99966 * 312.36026 * 5 3 2 8 8 C 1.46967 * 120.59527 * 3.90307 * 7 5 3 9 9 C 1.53372 * 108.63370 * 235.21149 * 8 7 5 10 10 N 1.46969 * 108.63223 * 310.57127 * 9 8 7 11 11 C 1.34777 * 120.59308 * 235.20603 * 10 9 8 12 12 O 1.21685 * 120.00335 * 5.07955 * 11 10 9 13 13 C 1.46378 * 119.99801 * 185.07492 * 11 10 9 14 14 H 1.08000 * 119.99626 * 354.91576 * 13 11 10 15 15 C 1.40043 * 119.99842 * 174.91415 * 13 11 10 16 16 N 1.30669 * 120.00289 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00113 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47257 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46797 * 300.00186 * 17 15 13 20 20 H 1.48505 * 109.47225 * 59.99619 * 17 15 13 21 21 C 1.46963 * 118.80991 * 55.48540 * 10 9 8 22 22 C 1.46961 * 120.59197 * 183.88683 * 7 5 3 23 23 C 1.50701 * 109.47015 * 293.74805 * 3 2 1 24 24 C 1.38220 * 120.01492 * 353.58741 * 23 3 2 25 25 C 1.38222 * 120.02710 * 179.72225 * 24 23 3 26 26 C 1.38274 * 120.04783 * 0.54909 * 25 24 23 27 27 C 1.38175 * 120.02395 * 359.72542 * 26 25 24 28 28 C 1.38438 * 120.01095 * 173.85969 * 23 3 2 29 29 F 1.35101 * 120.02598 * 0.02562 * 28 23 3 30 30 H 1.09004 * 109.47083 * 182.40079 * 1 2 3 31 31 H 1.09003 * 109.47183 * 302.39240 * 1 2 3 32 32 H 1.08994 * 109.47254 * 62.40064 * 1 2 3 33 33 H 1.09005 * 109.47176 * 179.97438 * 4 3 2 34 34 H 1.08992 * 109.47440 * 300.00061 * 4 3 2 35 35 H 1.09001 * 109.47243 * 60.00204 * 4 3 2 36 36 H 1.08991 * 109.60732 * 115.46121 * 8 7 5 37 37 H 1.08998 * 109.60527 * 354.94905 * 8 7 5 38 38 H 1.09003 * 109.60737 * 190.83084 * 9 8 7 39 39 H 1.08995 * 109.61192 * 70.31505 * 9 8 7 40 40 H 0.96999 * 120.00200 * 179.97438 * 16 15 13 41 41 H 1.08991 * 109.61559 * 64.26409 * 21 10 9 42 42 H 1.08999 * 109.60936 * 184.77681 * 21 10 9 43 43 H 1.09007 * 109.61127 * 244.53397 * 22 7 5 44 44 H 1.08998 * 109.61602 * 5.04579 * 22 7 5 45 45 H 1.08000 * 119.98574 * 359.97438 * 24 23 3 46 46 H 1.07993 * 119.97579 * 180.27161 * 25 24 23 47 47 H 1.07998 * 119.98646 * 179.74763 * 26 25 24 48 48 H 1.08004 * 120.00893 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4384 2.1183 1.1632 5 6 3.5048 1.1899 0.1547 6 8 4.2406 1.8139 -0.5803 7 7 4.0238 0.3931 1.1097 8 6 3.1478 -0.4342 1.9512 9 6 3.4351 -0.1121 3.4229 10 7 4.8874 -0.1697 3.6413 11 6 5.4064 -0.9664 4.5964 12 8 4.6813 -1.7150 5.2246 13 6 6.8424 -0.9314 4.8780 14 1 7.4980 -0.3290 4.2666 15 6 7.3660 -1.6788 5.9403 16 7 6.5727 -2.4072 6.6803 17 14 9.1985 -1.6336 6.3002 18 1 9.4955 -2.5036 7.4664 19 1 9.9479 -2.1212 5.1145 20 1 9.6087 -0.2395 6.6060 21 6 5.7630 0.6619 2.8036 22 6 5.4760 0.3357 1.3281 23 6 1.6917 1.9971 -1.3005 24 6 1.0555 1.3051 -2.3139 25 6 0.7582 1.9408 -3.5047 26 6 1.1069 3.2663 -3.6879 27 6 1.7481 3.9584 -2.6783 28 6 2.0414 3.3241 -1.4828 29 9 2.6687 3.9997 -0.4952 30 1 -0.3633 -1.0268 0.0430 31 1 -0.3634 0.5505 0.8678 32 1 -0.3633 0.4761 -0.9107 33 1 1.8820 3.1139 1.1635 34 1 0.3574 2.2018 1.0514 35 1 1.6687 1.6181 2.1039 36 1 3.3478 -1.4886 1.7616 37 1 2.1053 -0.2104 1.7246 38 1 2.9400 -0.8442 4.0610 39 1 3.0694 0.8876 3.6568 40 1 6.9355 -2.9252 7.4158 41 1 5.5592 1.7154 2.9944 42 1 6.8056 0.4411 3.0325 43 1 5.8419 -0.6641 1.0942 44 1 5.9712 1.0677 0.6901 45 1 0.7870 0.2685 -2.1737 46 1 0.2571 1.4007 -4.2943 47 1 0.8778 3.7608 -4.6202 48 1 2.0200 4.9938 -2.8215 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294678150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:53 Heat of formation + Delta-G solvation = -93.230249 kcal Electronic energy + Delta-G solvation = -34729.207332 eV Core-core repulsion = 30086.456626 eV Total energy + Delta-G solvation = -4642.750706 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.163 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.02239 -41.04530 -39.21468 -38.01613 -37.74153 -35.81453 -33.09096 -32.80451 -32.48449 -31.11173 -30.78591 -29.62325 -27.95538 -27.15358 -25.97192 -24.16093 -23.36793 -23.00327 -22.57542 -21.24729 -19.98568 -18.74762 -18.05782 -17.61641 -16.77048 -16.59422 -16.19112 -15.92614 -15.75831 -15.64234 -15.46057 -15.12015 -14.90539 -14.62213 -14.54365 -14.27513 -14.11949 -13.92458 -13.51428 -13.23979 -13.16645 -12.95519 -12.58247 -12.55793 -12.45674 -12.12903 -11.97043 -11.82155 -11.73246 -11.59732 -11.36984 -11.14694 -11.09172 -10.97058 -10.85361 -10.69381 -10.28428 -10.13696 -9.94536 -9.67182 -9.16538 -8.90824 -8.85703 -8.59933 -7.64982 -7.22874 -6.24374 -4.69755 0.86947 0.97180 2.46283 3.01415 3.13585 3.18921 3.20293 3.37351 3.49878 4.05226 4.06000 4.16839 4.39261 4.49237 4.53389 4.57259 4.59554 4.73077 4.98550 5.01532 5.08039 5.13055 5.29579 5.33063 5.39221 5.42551 5.47178 5.53170 5.58989 5.63908 5.76477 5.77510 5.82986 5.88232 5.96051 6.00463 6.02322 6.11615 6.17128 6.34438 6.37759 6.54676 6.62610 6.67508 6.76282 7.41053 7.50002 7.56619 8.06504 8.21965 8.28035 8.97553 9.35283 10.51679 10.70160 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.002541 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.707719 B =11018.071040 C =11687.973895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.357 6.357 3 C 0.147 3.853 4 C -0.192 4.192 5 C 0.535 3.465 6 O -0.532 6.532 7 N -0.587 5.587 8 C 0.083 3.917 9 C 0.104 3.896 10 N -0.642 5.642 11 C 0.560 3.440 12 O -0.576 6.576 13 C -0.545 4.545 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.267 1.267 20 H -0.267 1.267 21 C 0.111 3.889 22 C 0.094 3.906 23 C -0.134 4.134 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.087 4.087 27 C -0.161 4.161 28 C 0.140 3.860 29 F -0.128 7.128 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.269 0.731 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.132 0.868 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 9.648 -18.087 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.276 6.276 3 C 0.104 3.896 4 C -0.249 4.249 5 C 0.320 3.680 6 O -0.409 6.409 7 N -0.319 5.319 8 C -0.040 4.040 9 C -0.021 4.021 10 N -0.381 5.381 11 C 0.366 3.634 12 O -0.459 6.459 13 C -0.581 4.581 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.192 1.192 20 H -0.192 1.192 21 C -0.014 4.014 22 C -0.029 4.029 23 C -0.136 4.136 24 C -0.098 4.098 25 C -0.156 4.156 26 C -0.105 4.105 27 C -0.179 4.179 28 C 0.120 3.880 29 F -0.106 7.106 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.159 0.841 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.672 9.258 -17.876 24.335 hybrid contribution 0.859 0.364 0.296 0.979 sum -12.813 9.622 -17.580 23.787 Atomic orbital electron populations 1.23190 0.80741 1.03677 1.01482 1.88122 1.20481 1.24873 1.94082 1.20319 0.91970 0.84583 0.92680 1.22692 1.02262 1.02262 0.97703 1.19702 0.88188 0.79589 0.80492 1.90706 1.59966 1.46109 1.44158 1.47949 1.08050 1.41783 1.34119 1.22659 0.95351 0.95216 0.90766 1.21579 0.85463 1.00766 0.94303 1.48183 1.03716 1.47388 1.38833 1.18261 0.89260 0.78425 0.77435 1.90589 1.62000 1.41699 1.51620 1.20928 0.91330 1.30006 1.15842 0.90923 1.25717 0.99140 0.93396 0.94919 1.69994 1.35770 1.20258 1.13558 0.86447 0.83108 0.78875 0.78453 1.20540 1.19179 1.19224 1.21900 0.97486 0.94175 0.87887 1.22288 0.79545 1.02788 0.98275 1.19955 1.03167 0.93158 0.97310 1.21045 0.96517 1.00311 0.91887 1.21154 1.01820 0.95109 0.97477 1.21031 0.96714 0.94453 0.98317 1.21127 1.02706 1.01392 0.92708 1.17345 0.94623 0.89667 0.86358 1.91478 1.79610 1.79639 1.59859 0.88647 0.92808 0.92658 0.89457 0.90515 0.89727 0.91001 0.87455 0.88586 0.93796 0.91974 0.93457 0.87627 0.90921 0.88962 0.84127 0.85243 0.85059 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.56 101.05 0.97 1.00 16 2 O -0.36 -4.14 6.65 -35.23 -0.23 -4.37 16 3 C 0.15 1.90 0.43 -92.93 -0.04 1.86 16 4 C -0.19 -2.17 7.48 37.15 0.28 -1.89 16 5 C 0.53 8.75 6.44 -10.98 -0.07 8.68 16 6 O -0.53 -10.02 14.03 5.55 0.08 -9.94 16 7 N -0.59 -9.72 2.95 -172.21 -0.51 -10.23 16 8 C 0.08 1.33 5.25 -3.59 -0.02 1.31 16 9 C 0.10 1.95 6.51 -3.59 -0.02 1.93 16 10 N -0.64 -14.29 2.94 -173.87 -0.51 -14.81 16 11 C 0.56 15.53 7.62 -12.99 -0.10 15.43 16 12 O -0.58 -18.13 14.45 5.20 0.08 -18.05 16 13 C -0.54 -14.90 8.87 -35.63 -0.32 -15.22 16 14 H 0.07 1.80 5.66 -52.49 -0.30 1.51 16 15 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 16 N -0.77 -22.57 11.84 55.55 0.66 -21.91 16 17 Si 0.91 19.78 29.56 -169.99 -5.02 14.76 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C 0.11 2.09 6.51 -3.37 -0.02 2.06 16 22 C 0.09 1.61 6.60 -3.37 -0.02 1.58 16 23 C -0.13 -1.65 4.18 -104.55 -0.44 -2.09 16 24 C -0.08 -0.80 7.72 -39.59 -0.31 -1.11 16 25 C -0.14 -1.13 10.05 -39.57 -0.40 -1.53 16 26 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 27 C -0.16 -1.62 10.03 -39.52 -0.40 -2.01 16 28 C 0.14 1.77 6.16 -39.42 -0.24 1.53 16 29 F -0.13 -1.83 13.60 2.25 0.03 -1.80 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.38 6.19 -51.93 -0.32 0.06 16 32 H 0.06 0.38 5.19 -51.93 -0.27 0.11 16 33 H 0.09 1.07 5.85 -51.93 -0.30 0.77 16 34 H 0.08 0.68 6.42 -51.93 -0.33 0.35 16 35 H 0.08 0.98 5.65 -51.93 -0.29 0.68 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.11 1.45 3.63 -51.93 -0.19 1.26 16 38 H 0.10 1.98 6.99 -51.93 -0.36 1.62 16 39 H 0.04 0.76 7.52 -51.93 -0.39 0.37 16 40 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.11 2.03 5.34 -51.93 -0.28 1.75 16 43 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 44 H 0.09 1.52 7.01 -51.93 -0.36 1.16 16 45 H 0.14 1.25 5.69 -52.49 -0.30 0.95 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 48 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -35.94 372.44 -7.26 -43.20 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.79 Total: 4.79 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -1.64 Total: 12.75 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.36 Total: -46.94 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.08 Total: -32.37 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.94 -7.26 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294678150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.028 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds