Wall clock time and date at job start Tue Mar 31 2020 05:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.50700 * 109.47346 * 240.00463 * 2 1 3 5 5 H 1.07998 * 120.00089 * 245.47325 * 4 2 1 6 6 C 1.37884 * 120.00108 * 65.46873 * 4 2 1 7 7 N 1.31510 * 119.99434 * 5.23510 * 6 4 2 8 8 Si 1.86793 * 120.00176 * 185.23137 * 6 4 2 9 9 H 1.48500 * 109.47282 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47434 * 120.00378 * 8 6 4 11 11 H 1.48499 * 109.47239 * 240.00309 * 8 6 4 12 12 N 1.46499 * 109.47381 * 120.00335 * 2 1 3 13 13 C 1.46506 * 119.99962 * 64.70737 * 12 2 1 14 14 S 1.65599 * 119.99944 * 244.70999 * 12 2 1 15 15 O 1.42105 * 106.40024 * 161.48588 * 14 12 2 16 16 O 1.42094 * 106.40630 * 28.56245 * 14 12 2 17 17 N 1.65606 * 107.21535 * 275.01842 * 14 12 2 18 18 C 1.47017 * 125.64435 * 84.91470 * 17 14 12 19 19 C 1.54327 * 107.27019 * 178.97263 * 18 17 14 20 20 C 1.55157 * 102.94315 * 337.80664 * 19 18 17 21 21 C 1.47425 * 125.65116 * 264.95234 * 17 14 12 22 22 H 1.08997 * 110.45730 * 85.20668 * 21 17 14 23 23 C 1.50704 * 110.36699 * 322.93423 * 21 17 14 24 24 C 1.32559 * 119.99979 * 127.73192 * 23 21 17 25 25 C 1.47819 * 120.00136 * 184.99857 * 24 23 21 26 26 C 1.39535 * 120.13694 * 355.08010 * 25 24 23 27 27 C 1.37969 * 119.85128 * 180.25774 * 26 25 24 28 28 C 1.38349 * 120.14571 * 359.51829 * 27 26 25 29 29 C 1.38341 * 120.28400 * 0.27525 * 28 27 26 30 30 C 1.37982 * 120.14006 * 359.95735 * 29 28 27 31 31 H 1.08996 * 109.46816 * 299.99677 * 1 2 3 32 32 H 1.09000 * 109.47167 * 59.99497 * 1 2 3 33 33 H 1.09007 * 109.47006 * 179.97438 * 1 2 3 34 34 H 0.97006 * 119.99870 * 184.99644 * 7 6 4 35 35 H 1.08997 * 109.47073 * 270.00240 * 13 12 2 36 36 H 1.09005 * 109.46879 * 29.99735 * 13 12 2 37 37 H 1.08992 * 109.47150 * 150.00390 * 13 12 2 38 38 H 1.09002 * 109.88448 * 59.55949 * 18 17 14 39 39 H 1.09001 * 110.01150 * 298.46311 * 18 17 14 40 40 H 1.08999 * 110.72119 * 219.44005 * 19 18 17 41 41 H 1.09005 * 110.71630 * 96.17294 * 19 18 17 42 42 H 1.08994 * 111.00136 * 277.42679 * 20 19 18 43 43 H 1.09004 * 111.00196 * 153.57078 * 20 19 18 44 44 H 1.08001 * 119.99630 * 307.72939 * 23 21 17 45 45 H 1.08001 * 120.00303 * 4.99277 * 24 23 21 46 46 H 1.08001 * 120.07408 * 0.05129 * 26 25 24 47 47 H 1.08005 * 119.92911 * 179.79281 * 27 26 25 48 48 H 1.07994 * 119.86008 * 180.25187 * 28 27 26 49 49 H 1.07998 * 119.93263 * 179.97438 * 29 28 27 50 50 H 1.08000 * 120.06955 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5784 -1.6370 -1.1339 6 6 1.7948 -0.1771 -2.4797 7 7 1.2212 1.0009 -2.5934 8 14 2.2877 -1.1277 -4.0102 9 1 2.9097 -2.4165 -3.6135 10 1 1.0833 -1.3936 -4.8371 11 1 3.2616 -0.3290 -4.7968 12 7 2.0184 -0.6907 1.1961 13 6 1.7515 -2.1198 1.3770 14 16 2.8720 0.1440 2.3436 15 8 2.8227 -0.6387 3.5287 16 8 2.4188 1.4893 2.2814 17 7 4.4559 0.1612 1.8602 18 6 5.0572 1.1277 0.9298 19 6 6.5525 0.7689 0.7996 20 6 6.8325 -0.0308 2.0994 21 6 5.4961 -0.7905 2.2910 22 1 5.4754 -1.6849 1.6684 23 6 5.3042 -1.1568 3.7401 24 6 5.2493 -2.4315 4.0999 25 6 4.9511 -2.7915 5.5022 26 6 4.8283 -1.7944 6.4706 27 6 4.5551 -2.1375 7.7787 28 6 4.3932 -3.4660 8.1293 29 6 4.5094 -4.4590 7.1732 30 6 4.7871 -4.1295 5.8623 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 0.9881 1.3442 -3.4703 35 1 0.8093 -2.2489 1.9097 36 1 1.6871 -2.6036 0.4024 37 1 2.5594 -2.5701 1.9536 38 1 4.9515 2.1380 1.3252 39 1 4.5731 1.0585 -0.0444 40 1 7.1637 1.6707 0.7624 41 1 6.7250 0.1484 -0.0798 42 1 7.0243 0.6397 2.9369 43 1 7.6604 -0.7259 1.9597 44 1 5.2114 -0.3808 4.4855 45 1 5.4225 -3.2070 3.3685 46 1 4.9501 -0.7567 6.1973 47 1 4.4631 -1.3669 8.5299 48 1 4.1754 -3.7290 9.1538 49 1 4.3823 -5.4943 7.4532 50 1 4.8773 -4.9056 5.1167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328586244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:13 Heat of formation + Delta-G solvation = -28.406832 kcal Electronic energy + Delta-G solvation = -32163.650669 eV Core-core repulsion = 28089.924093 eV Total energy + Delta-G solvation = -4073.726576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -39.24675 -38.44308 -36.67234 -36.11316 -35.19080 -34.22564 -32.57648 -30.96918 -30.69388 -30.44185 -29.17211 -27.35226 -25.43791 -25.21803 -23.39760 -22.60712 -21.69392 -21.03439 -20.71925 -19.64036 -18.32374 -17.24520 -16.89133 -16.71820 -16.37709 -15.89320 -15.31636 -15.16264 -14.70451 -14.56139 -14.06181 -13.78204 -13.47579 -13.46517 -13.25768 -13.21859 -13.00405 -12.86975 -12.71238 -12.38779 -12.05472 -11.93588 -11.80122 -11.59487 -11.43369 -11.39941 -11.27630 -11.19321 -11.13264 -11.01915 -10.89260 -10.85846 -10.83220 -10.59985 -10.46008 -10.27970 -10.07958 -9.96201 -9.32454 -8.93307 -8.68802 -8.48503 -7.98442 -7.94909 -6.14160 -4.20498 0.95584 1.25940 1.43023 2.56023 3.21057 3.30302 3.32248 3.55054 3.96563 4.14535 4.33353 4.52629 4.67120 4.78012 4.82114 4.95050 5.04827 5.06421 5.17165 5.17871 5.26454 5.34565 5.45047 5.56213 5.58576 5.65055 5.68173 5.83674 5.92300 5.97088 5.98366 6.05113 6.16912 6.20165 6.32196 6.34163 6.36946 6.40271 6.48077 6.50975 6.60361 6.71261 6.74472 6.82701 6.89127 6.93233 7.02770 7.06411 7.45777 7.59055 7.73994 7.94165 8.21929 8.83285 9.45202 10.92885 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003204 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.129903 B = 8737.639058 C = 9221.928814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.269 3.731 3 H 0.057 0.943 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.789 3.211 15 O -0.979 6.979 16 O -0.981 6.981 17 N -1.010 6.010 18 C 0.118 3.882 19 C -0.126 4.126 20 C -0.120 4.120 21 C 0.181 3.819 22 H 0.079 0.921 23 C -0.131 4.131 24 C -0.111 4.111 25 C -0.035 4.035 26 C -0.108 4.108 27 C -0.120 4.120 28 C -0.129 4.129 29 C -0.122 4.122 30 C -0.114 4.114 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.099 -6.429 13.208 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.800 3.200 15 O -0.964 6.964 16 O -0.965 6.965 17 N -0.848 5.848 18 C -0.008 4.008 19 C -0.165 4.165 20 C -0.159 4.159 21 C 0.075 3.925 22 H 0.096 0.904 23 C -0.150 4.150 24 C -0.130 4.130 25 C -0.035 4.035 26 C -0.125 4.125 27 C -0.138 4.138 28 C -0.147 4.147 29 C -0.140 4.140 30 C -0.132 4.132 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.630 -5.839 13.870 18.424 hybrid contribution 0.092 -0.659 -1.367 1.521 sum 10.722 -6.498 12.502 17.706 Atomic orbital electron populations 1.21989 0.98409 0.99488 1.00147 1.18666 0.91446 0.92702 0.80592 0.92510 1.21382 1.36171 1.08417 0.90328 0.91791 1.24924 0.95428 0.94412 0.98945 1.69951 1.41846 1.16380 1.24228 0.86548 0.78320 0.80022 0.83135 1.19796 1.20951 1.21021 1.57812 1.68085 1.18733 1.38590 1.21171 0.99290 0.81379 1.02042 1.01692 0.71666 0.73399 0.73237 1.93584 1.86082 1.71562 1.45124 1.93575 1.79549 1.36215 1.87196 1.59281 1.25743 1.39999 1.59809 1.21707 0.93456 0.91737 0.93870 1.22618 0.95437 1.00545 0.97928 1.22773 0.95849 0.99015 0.98247 1.20571 0.87732 0.92645 0.91581 0.90351 1.23436 0.97942 0.97242 0.96350 1.21451 1.01251 0.96302 0.93978 1.18999 0.98344 0.93055 0.93127 1.21311 0.99263 0.99242 0.92724 1.21064 1.00198 0.96317 0.96260 1.21134 1.01196 0.93112 0.99290 1.21033 1.00524 0.99160 0.93293 1.21242 1.00288 0.95447 0.96272 0.96523 0.90374 0.94674 0.92644 0.94106 0.90309 0.93049 0.91694 0.90089 0.90423 0.90480 0.90652 0.90208 0.86658 0.86474 0.85953 0.86261 0.86468 0.86281 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.09 37.16 0.34 -3.02 16 2 C 0.27 6.56 2.43 -69.08 -0.17 6.40 16 3 H 0.06 1.54 7.12 -51.93 -0.37 1.17 16 4 C -0.52 -13.23 8.00 -34.44 -0.28 -13.50 16 5 H 0.06 1.58 6.81 -52.49 -0.36 1.22 16 6 C 0.07 1.70 5.27 -17.82 -0.09 1.61 16 7 N -0.89 -24.15 11.96 55.43 0.66 -23.49 16 8 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.99 -20.88 3.12 -115.85 -0.36 -21.24 16 13 C 0.11 1.97 9.47 59.85 0.57 2.54 16 14 S 2.79 56.12 6.21 -107.50 -0.67 55.45 16 15 O -0.98 -19.57 14.10 -57.17 -0.81 -20.37 16 16 O -0.98 -23.10 16.58 -57.17 -0.95 -24.04 16 17 N -1.01 -16.89 3.63 -105.66 -0.38 -17.28 16 18 C 0.12 1.84 7.04 -3.06 -0.02 1.82 16 19 C -0.13 -1.46 6.95 -24.89 -0.17 -1.63 16 20 C -0.12 -1.28 6.49 -24.58 -0.16 -1.44 16 21 C 0.18 2.45 3.60 -67.57 -0.24 2.20 16 22 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 23 C -0.13 -1.78 5.68 -36.21 -0.21 -1.99 16 24 C -0.11 -1.44 9.46 -37.57 -0.36 -1.80 16 25 C -0.04 -0.47 5.86 -105.01 -0.62 -1.08 16 26 C -0.11 -1.41 9.40 -39.20 -0.37 -1.78 16 27 C -0.12 -1.39 10.03 -39.64 -0.40 -1.78 16 28 C -0.13 -1.37 10.04 -39.50 -0.40 -1.77 16 29 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 30 C -0.11 -1.35 9.79 -39.19 -0.38 -1.73 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 2.00 6.73 -51.93 -0.35 1.65 16 33 H 0.03 0.78 7.79 -51.93 -0.40 0.37 16 34 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.46 6.57 -51.93 -0.34 1.12 16 37 H 0.05 0.84 7.66 -51.93 -0.40 0.44 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.12 1.61 6.06 -52.49 -0.32 1.29 16 45 H 0.12 1.32 7.91 -52.49 -0.42 0.90 16 46 H 0.12 1.55 6.18 -52.49 -0.32 1.22 16 47 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 48 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 49 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -31.19 411.40 -12.57 -43.76 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.89 Total: 4.65 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -3.35 Total: -18.65 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.08 Total: -62.01 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.75 Total: -44.42 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.67 Total: 55.45 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.19 -12.57 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328586244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.356 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds