Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39663 * 120.12542 * 265.10275 * 3 2 1 5 5 C 1.37955 * 119.95773 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.21399 * 359.72692 * 5 4 3 7 7 C 1.38813 * 120.24847 * 0.54921 * 6 5 4 8 8 O 1.35904 * 119.97963 * 179.72212 * 7 6 5 9 9 C 1.42895 * 117.00167 * 359.73084 * 8 7 6 10 10 C 1.53003 * 109.47528 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47356 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46741 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46557 * 179.97438 * 12 11 10 14 14 O 1.21285 * 120.00428 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00136 * 179.97438 * 13 12 11 16 16 C 1.39121 * 120.00569 * 175.26614 * 15 13 12 17 17 C 1.38643 * 120.28309 * 34.21811 * 16 15 13 18 18 C 1.38222 * 120.03605 * 180.02562 * 17 16 15 19 19 C 1.38865 * 120.61715 * 359.97438 * 18 17 16 20 20 C 1.36467 * 120.57337 * 0.02562 * 19 18 17 21 21 C 1.40738 * 119.94464 * 359.70427 * 20 19 18 22 22 C 1.41066 * 120.30398 * 180.29799 * 21 20 19 23 23 H 1.08000 * 120.00492 * 148.80690 * 22 21 20 24 24 C 1.39968 * 119.99907 * 328.80059 * 22 21 20 25 25 N 1.30850 * 119.99670 * 167.54054 * 24 22 21 26 26 Si 1.86803 * 119.99811 * 347.54788 * 24 22 21 27 27 H 1.48496 * 109.46997 * 92.49783 * 26 24 22 28 28 H 1.48496 * 109.46960 * 212.49805 * 26 24 22 29 29 H 1.48502 * 109.46927 * 332.49862 * 26 24 22 30 30 C 1.38481 * 120.03932 * 359.45339 * 7 6 5 31 31 H 1.08004 * 120.01991 * 359.95816 * 4 3 2 32 32 H 1.08007 * 119.89065 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.87178 * 180.27532 * 6 5 4 34 34 H 1.09004 * 109.47021 * 299.99858 * 9 8 7 35 35 H 1.09000 * 109.47194 * 59.99549 * 9 8 7 36 36 H 1.09004 * 109.46859 * 299.99964 * 10 9 8 37 37 H 1.09000 * 109.47246 * 59.99588 * 10 9 8 38 38 H 1.09002 * 109.46374 * 299.99516 * 11 10 9 39 39 H 1.08991 * 109.47258 * 59.99813 * 11 10 9 40 40 H 1.08994 * 109.46980 * 299.99461 * 12 11 10 41 41 H 1.09004 * 109.47096 * 60.00196 * 12 11 10 42 42 H 0.97006 * 119.99252 * 355.27379 * 15 13 12 43 43 H 1.08001 * 119.98420 * 359.97438 * 17 16 15 44 44 H 1.08002 * 119.69565 * 179.97438 * 18 17 16 45 45 H 1.07996 * 119.71488 * 179.97438 * 19 18 17 46 46 H 1.07998 * 120.03054 * 179.97438 * 20 19 18 47 47 H 0.97010 * 119.99331 * 180.02562 * 25 24 22 48 48 H 1.08000 * 120.10655 * 180.25559 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.1041 1.2036 5 6 4.6485 0.1038 1.1996 6 6 5.3409 -0.0043 0.0074 7 6 4.6532 -0.1018 -1.1944 8 8 5.3392 -0.2021 -2.3633 9 6 6.7658 -0.1950 -2.2809 10 6 7.3585 -0.3162 -3.6862 11 6 8.8860 -0.3092 -3.5979 12 6 9.4786 -0.4311 -5.0033 13 6 10.9830 -0.4236 -4.9163 14 8 11.5276 -0.3295 -3.8367 15 7 11.7234 -0.5215 -6.0382 16 6 13.1089 -0.4157 -5.9689 17 6 13.7928 -0.9018 -4.8653 18 6 15.1693 -0.7935 -4.8015 19 6 15.8808 -0.2004 -5.8361 20 6 15.2330 0.2865 -6.9341 21 6 13.8324 0.1837 -7.0265 22 6 13.1556 0.6789 -8.1609 23 1 12.2445 0.2053 -8.4956 24 6 13.6648 1.7841 -8.8525 25 7 13.1877 2.0952 -10.0305 26 14 15.0257 2.8147 -8.0939 27 1 16.3444 2.3039 -8.5468 28 1 14.8703 4.2292 -8.5182 29 1 14.9439 2.7301 -6.6135 30 6 3.2684 -0.1025 -1.2025 31 1 2.7312 0.1845 2.1368 32 1 5.1894 0.1834 2.1310 33 1 6.4210 -0.0084 0.0111 34 1 7.0987 0.7375 -1.8250 35 1 7.0988 -1.0360 -1.6727 36 1 7.0255 -1.2489 -4.1417 37 1 7.0255 0.5245 -4.2948 38 1 9.2192 0.6232 -3.1423 39 1 9.2186 -1.1502 -2.9895 40 1 9.1452 -1.3637 -5.4584 41 1 9.1459 0.4097 -5.6120 42 1 11.2902 -0.6656 -6.8941 43 1 13.2497 -1.3646 -4.0545 44 1 15.6965 -1.1737 -3.9390 45 1 16.9560 -0.1231 -5.7709 46 1 15.7950 0.7465 -7.7335 47 1 13.5410 2.8609 -10.5100 48 1 2.7322 -0.1825 -2.1366 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344366329.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = -11.146652 kcal Electronic energy + Delta-G solvation = -29425.378666 eV Core-core repulsion = 25216.956596 eV Total energy + Delta-G solvation = -4208.422070 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.71166 -39.76183 -38.47326 -37.59904 -36.67062 -35.04845 -33.91634 -33.64860 -31.93273 -31.11100 -30.49090 -29.84812 -28.38991 -25.60446 -24.97930 -23.86942 -22.96850 -22.16401 -21.35979 -20.53055 -19.77828 -19.48524 -17.50786 -17.11311 -17.04913 -16.77280 -16.64782 -16.53354 -16.25715 -15.56172 -15.19345 -14.66381 -14.54137 -14.27122 -14.12258 -14.06353 -13.83229 -13.63685 -13.52360 -13.16382 -13.13263 -12.85649 -12.59484 -12.51071 -12.28900 -12.17281 -12.02995 -11.83630 -11.68955 -11.63914 -11.20408 -11.19206 -11.13234 -10.92203 -10.75140 -10.47500 -10.05885 -9.88246 -9.57662 -9.41853 -9.38932 -8.88389 -8.78866 -7.68482 -7.17919 -7.01051 -4.54966 0.20815 0.83522 2.13690 2.37463 2.46269 2.61693 2.66634 3.05599 3.12232 3.27444 3.28623 3.35342 3.43584 3.83101 3.93149 4.20835 4.45159 4.48535 4.50801 4.56556 4.58427 4.72454 4.83691 4.92087 5.05303 5.06148 5.15487 5.28469 5.31727 5.50919 5.51871 5.59690 5.67246 5.69045 5.75239 5.80065 6.02852 6.03217 6.05103 6.11087 6.18865 6.31324 6.58692 6.69538 6.89835 6.94902 6.99501 7.11830 7.33037 7.45014 7.65545 7.77001 7.92773 8.18930 8.22475 8.53825 8.67198 8.86527 10.00960 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.001385 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.620954 B =20204.733794 C =21076.760649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.256 3.744 3 C 0.009 3.991 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.180 4.180 7 C 0.136 3.864 8 O -0.311 6.311 9 C 0.058 3.942 10 C -0.119 4.119 11 C -0.099 4.099 12 C -0.138 4.138 13 C 0.500 3.500 14 O -0.543 6.543 15 N -0.640 5.640 16 C 0.030 3.970 17 C -0.077 4.077 18 C -0.227 4.227 19 C -0.087 4.087 20 C -0.227 4.227 21 C 0.084 3.916 22 C -0.450 4.450 23 H 0.088 0.912 24 C 0.085 3.915 25 N -0.813 5.813 26 Si 0.913 3.087 27 H -0.270 1.270 28 H -0.293 1.293 29 H -0.244 1.244 30 C -0.107 4.107 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.405 0.595 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.285 0.715 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 -3.490 15.543 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.059 4.059 3 C 0.005 3.995 4 C -0.133 4.133 5 C -0.096 4.096 6 C -0.200 4.200 7 C 0.090 3.910 8 O -0.225 6.225 9 C -0.017 4.017 10 C -0.157 4.157 11 C -0.137 4.137 12 C -0.178 4.178 13 C 0.287 3.713 14 O -0.422 6.422 15 N -0.282 5.282 16 C -0.063 4.063 17 C -0.098 4.098 18 C -0.247 4.247 19 C -0.106 4.106 20 C -0.246 4.246 21 C 0.080 3.920 22 C -0.479 4.479 23 H 0.106 0.894 24 C -0.133 4.133 25 N -0.438 5.438 26 Si 0.740 3.260 27 H -0.197 1.197 28 H -0.221 1.221 29 H -0.167 1.167 30 C -0.128 4.128 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.241 0.759 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.121 0.879 47 H 0.096 0.904 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.858 -3.281 15.832 22.648 hybrid contribution 1.082 0.553 -0.295 1.250 sum -14.777 -2.729 15.537 21.615 Atomic orbital electron populations 1.81282 1.11981 1.08356 1.07129 1.25601 0.92527 0.93915 0.93871 1.15636 0.84222 1.05367 0.94227 1.21084 0.94344 1.01172 0.96652 1.20919 0.93425 0.97188 0.98085 1.21617 1.01257 1.04954 0.92126 1.18731 0.91192 0.95690 0.85409 1.86090 1.20842 1.87611 1.27912 1.22973 0.76969 1.01942 0.99820 1.21585 0.95357 1.03974 0.94788 1.21195 0.92111 1.04020 0.96367 1.21604 0.92437 1.04537 0.99258 1.20581 0.89381 0.76963 0.84343 1.90637 1.73567 1.49970 1.28022 1.42923 1.05870 1.69428 1.09987 1.17606 0.81305 1.09980 0.97458 1.20801 0.93727 0.98051 0.97194 1.20340 0.93697 1.10598 1.00091 1.20382 0.97835 0.98173 0.94197 1.20642 0.94027 1.10041 0.99925 1.17559 0.91480 0.91027 0.91935 1.19184 1.09751 1.11924 1.07049 0.89384 1.26071 0.96400 0.97562 0.93312 1.69651 1.38650 1.24959 1.10513 0.86301 0.80178 0.77144 0.82335 1.19684 1.22087 1.16681 1.20357 0.91309 1.03279 0.97878 0.84829 0.84489 0.84402 0.91439 0.91493 0.90568 0.90466 0.90725 0.90844 0.89019 0.88657 0.75948 0.86594 0.88565 0.88805 0.87913 0.90414 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.42 18.54 41.84 0.78 -3.64 16 2 C 0.26 2.13 15.33 -22.47 -0.34 1.79 16 3 C 0.01 0.06 5.73 -106.95 -0.61 -0.55 16 4 C -0.11 -0.56 9.75 -39.15 -0.38 -0.94 16 5 C -0.08 -0.36 10.02 -39.66 -0.40 -0.75 16 6 C -0.18 -1.03 9.03 -39.35 -0.36 -1.39 16 7 C 0.14 0.98 6.68 -39.28 -0.26 0.72 16 8 O -0.31 -2.56 10.13 -19.44 -0.20 -2.75 16 9 C 0.06 0.40 4.74 37.16 0.18 0.57 16 10 C -0.12 -0.90 5.58 -26.73 -0.15 -1.04 16 11 C -0.10 -0.96 4.50 -26.73 -0.12 -1.08 16 12 C -0.14 -1.55 5.70 -27.88 -0.16 -1.70 16 13 C 0.50 8.42 7.67 -10.98 -0.08 8.34 16 14 O -0.54 -10.83 13.36 5.55 0.07 -10.76 16 15 N -0.64 -11.97 5.03 -9.48 -0.05 -12.02 16 16 C 0.03 0.68 6.35 -83.18 -0.53 0.15 16 17 C -0.08 -1.70 8.70 -39.44 -0.34 -2.05 16 18 C -0.23 -4.80 10.04 -39.36 -0.39 -5.20 16 19 C -0.09 -1.87 9.97 -39.99 -0.40 -2.27 16 20 C -0.23 -5.31 6.95 -39.28 -0.27 -5.59 16 21 C 0.08 2.03 5.14 -106.65 -0.55 1.48 16 22 C -0.45 -11.23 9.13 -37.86 -0.35 -11.58 16 23 H 0.09 2.19 7.08 -52.49 -0.37 1.82 16 24 C 0.08 2.12 5.47 -17.32 -0.09 2.02 16 25 N -0.81 -20.63 13.93 55.55 0.77 -19.85 16 26 Si 0.91 20.40 24.41 -169.99 -4.15 16.25 16 27 H -0.27 -5.85 6.66 56.52 0.38 -5.48 16 28 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 29 H -0.24 -5.70 6.69 56.52 0.38 -5.32 16 30 C -0.11 -0.74 9.69 -39.01 -0.38 -1.11 16 31 H 0.13 0.44 8.06 -52.48 -0.42 0.01 16 32 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 33 H 0.14 0.62 6.28 -52.48 -0.33 0.29 16 34 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 35 H 0.07 0.40 7.64 -51.93 -0.40 0.00 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.41 6.79 7.58 -40.82 -0.31 6.48 16 43 H 0.12 2.49 6.15 -52.49 -0.32 2.17 16 44 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.10 2.39 4.41 -52.49 -0.23 2.16 16 47 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 48 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -30.55 406.20 -8.83 -39.38 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.19 Total: 7.46 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -6.00 Total: -20.18 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 1.50 Total: -35.52 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.12 Total: -13.52 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.15 Total: 16.25 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.55 -8.83 -39.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344366329.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.233 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds