Wall clock time and date at job start Tue Mar 31 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48499 * 109.47011 * 240.00330 * 3 2 1 5 5 H 1.48494 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47067 * 120.00453 * 3 2 1 7 7 C 1.40049 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00395 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99948 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99770 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99977 * 179.97438 * 9 7 2 12 12 C 1.46503 * 119.99992 * 179.97438 * 11 9 7 13 13 H 1.09000 * 109.46965 * 325.00529 * 12 11 9 14 14 C 1.53002 * 109.46987 * 85.00149 * 12 11 9 15 15 C 1.53002 * 109.47072 * 295.00373 * 14 12 11 16 16 F 1.39900 * 109.47503 * 59.99821 * 15 14 12 17 17 F 1.39896 * 109.46818 * 180.02562 * 15 14 12 18 18 F 1.39900 * 109.47027 * 299.99633 * 15 14 12 19 19 C 1.50697 * 109.47039 * 205.00195 * 12 11 9 20 20 C 1.38244 * 119.98967 * 140.00157 * 19 12 11 21 21 C 1.38217 * 120.01084 * 180.02562 * 20 19 12 22 22 C 1.38324 * 119.98860 * 0.25885 * 21 20 19 23 23 Br 1.89097 * 120.00911 * 179.72004 * 22 21 20 24 24 C 1.38328 * 119.97976 * 359.46870 * 22 21 20 25 25 C 1.38219 * 119.99018 * 0.55003 * 24 22 21 26 26 H 0.97006 * 119.99894 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99855 * 0.02562 * 11 9 7 28 28 H 1.09006 * 109.46961 * 54.99911 * 14 12 11 29 29 H 1.08993 * 109.47254 * 175.00079 * 14 12 11 30 30 H 1.07999 * 119.99331 * 0.02562 * 20 19 12 31 31 H 1.08002 * 120.00169 * 179.97438 * 21 20 19 32 32 H 1.07997 * 120.00499 * 180.25472 * 24 22 21 33 33 H 1.08001 * 119.99446 * 179.72612 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9165 -0.0010 13 1 0.3063 -4.8103 0.5894 14 6 0.8509 -5.2949 -1.4377 15 6 -0.1268 -4.2632 -2.0039 16 9 0.4713 -2.9986 -1.9926 17 9 -0.4614 -4.6096 -3.3173 18 9 -1.2848 -4.2384 -1.2193 19 6 2.0811 -5.9954 0.5982 20 6 1.5241 -6.9381 1.4423 21 6 2.3169 -7.9276 1.9926 22 6 3.6688 -7.9714 1.7029 23 35 4.7554 -9.3201 2.4617 24 6 4.2245 -7.0313 0.8538 25 6 3.4310 -6.0420 0.3042 26 1 -0.4850 0.8401 -0.0004 27 1 2.9190 -3.6477 -0.0020 28 1 1.7531 -5.3142 -2.0491 29 1 0.3849 -6.2802 -1.4466 30 1 0.4695 -6.9013 1.6718 31 1 1.8818 -8.6637 2.6523 32 1 5.2791 -7.0676 0.6240 33 1 3.8657 -5.3054 -0.3552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390834436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:53 Heat of formation + Delta-G solvation = -153.063285 kcal Electronic energy + Delta-G solvation = -25340.192005 eV Core-core repulsion = 20997.513842 eV Total energy + Delta-G solvation = -4342.678163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.998 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.11105 -46.72645 -46.39616 -39.75954 -37.42824 -34.85208 -32.47286 -31.90886 -31.25750 -30.54685 -29.22614 -26.39412 -24.67345 -23.02469 -22.22302 -21.00423 -19.43442 -18.08107 -17.47316 -17.32161 -16.51444 -16.41403 -15.72934 -15.21840 -15.11632 -14.45977 -14.10860 -13.87423 -13.64078 -13.58144 -13.40398 -13.35557 -13.02731 -12.84241 -12.68349 -12.52234 -12.30935 -11.79067 -11.54553 -11.38274 -11.23477 -11.05178 -10.89967 -10.69990 -10.57735 -10.46302 -10.41777 -10.21284 -9.14864 -8.82657 -8.71774 -7.69718 -7.58409 -6.16384 -4.62075 0.93413 1.18774 1.46156 3.16505 3.21887 3.22947 3.42856 3.59633 4.08803 4.45131 4.55877 4.59887 4.67117 4.70654 4.77743 4.92438 5.07624 5.23829 5.31397 5.49518 5.55787 5.60399 5.76447 5.80200 5.96212 6.05492 6.06992 6.13733 6.51243 6.67725 7.44243 7.77964 7.98447 8.28770 9.04410 9.43012 10.60408 10.78816 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.003002 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.373632 B = 9323.801884 C =10760.526349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.091 3.909 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.565 3.435 10 O -0.570 6.570 11 N -0.764 5.764 12 C 0.190 3.810 13 H 0.101 0.899 14 C -0.174 4.174 15 C 0.456 3.544 16 F -0.143 7.143 17 F -0.209 7.209 18 F -0.175 7.175 19 C -0.059 4.059 20 C -0.103 4.103 21 C -0.090 4.090 22 C -0.094 4.094 23 Br -0.061 7.061 24 C -0.088 4.088 25 C -0.103 4.103 26 H 0.268 0.732 27 H 0.382 0.618 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 -17.893 1.821 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.370 3.630 10 O -0.452 6.452 11 N -0.420 5.420 12 C 0.083 3.917 13 H 0.119 0.881 14 C -0.214 4.214 15 C 0.402 3.598 16 F -0.124 7.124 17 F -0.191 7.191 18 F -0.157 7.157 19 C -0.060 4.060 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.174 4.174 23 Br 0.025 6.975 24 C -0.108 4.108 25 C -0.122 4.122 26 H 0.078 0.922 27 H 0.215 0.785 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.401 -18.223 2.099 19.780 hybrid contribution 0.629 1.200 -0.303 1.388 sum 8.030 -17.023 1.797 18.908 Atomic orbital electron populations 1.70007 1.06882 1.27199 1.34918 1.25633 0.94570 1.00017 0.92721 0.86501 0.79876 0.81411 0.79344 1.19376 1.20637 1.19401 1.20726 0.93316 0.89216 1.54686 0.91768 1.18089 0.87459 0.82033 0.75389 1.90665 1.13739 1.86177 1.54636 1.46524 1.08644 1.03737 1.83141 1.19334 0.96165 0.84102 0.92140 0.88082 1.23313 0.99799 0.97983 1.00328 1.20156 0.81402 0.83643 0.74574 1.93345 1.82381 1.41206 1.95449 1.93098 1.93614 1.92419 1.39953 1.93163 1.51635 1.96720 1.74150 1.20167 0.94372 0.95452 0.96015 1.21111 1.00502 0.93995 0.96581 1.21067 0.91657 0.98773 0.99438 1.21759 0.94724 0.97694 1.03200 1.96691 1.67730 1.50053 1.83053 1.21079 1.00306 0.93645 0.95795 1.21064 0.93199 0.97989 0.99956 0.92166 0.78535 0.88064 0.88207 0.84682 0.85007 0.84989 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.31 11.83 55.55 0.66 -21.66 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.90 19.92 29.56 -169.99 -5.02 14.90 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -14.68 9.54 -35.63 -0.34 -15.02 16 8 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 9 C 0.56 14.74 5.18 -12.99 -0.07 14.67 16 10 O -0.57 -16.70 10.62 5.20 0.06 -16.64 16 11 N -0.76 -15.21 4.79 -56.34 -0.27 -15.48 16 12 C 0.19 3.15 2.40 -69.08 -0.17 2.99 16 13 H 0.10 1.93 6.96 -51.93 -0.36 1.57 16 14 C -0.17 -2.66 4.99 -26.73 -0.13 -2.79 16 15 C 0.46 9.14 2.82 37.16 0.10 9.25 16 16 F -0.14 -3.53 11.64 2.25 0.03 -3.50 16 17 F -0.21 -3.90 17.32 2.25 0.04 -3.86 16 18 F -0.18 -3.88 15.25 2.25 0.03 -3.85 16 19 C -0.06 -0.78 4.96 -104.62 -0.52 -1.29 16 20 C -0.10 -1.20 9.67 -39.59 -0.38 -1.58 16 21 C -0.09 -0.96 9.79 -39.56 -0.39 -1.34 16 22 C -0.09 -1.03 6.22 -39.52 -0.25 -1.28 16 23 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.88 16 24 C -0.09 -0.95 9.79 -39.56 -0.39 -1.34 16 25 C -0.10 -1.21 9.05 -39.59 -0.36 -1.57 16 26 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 27 H 0.38 6.70 6.85 -40.82 -0.28 6.42 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.14 1.41 8.04 -52.49 -0.42 0.99 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.14 1.46 6.92 -52.49 -0.36 1.10 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -32.56 313.24 -7.69 -40.26 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -2.66 Total: 4.93 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.98 Total: 3.07 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.39 Total: -37.14 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.06 Total: -16.64 kcal Atomic # 9 Polarization: -11.31 SS G_CDS: 0.10 Total: -11.21 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.88 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.56 -7.69 -40.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390834436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.806 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds