Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47159 * 2 1 4 4 C 1.35974 * 117.00156 * 179.97438 * 3 2 1 5 5 C 1.38723 * 119.98519 * 179.97438 * 4 3 2 6 6 C 1.38083 * 120.01629 * 180.02562 * 5 4 3 7 7 C 1.38861 * 119.98297 * 0.02562 * 6 5 4 8 8 N 1.40040 * 120.01575 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00137 * 173.27874 * 8 7 6 10 10 C 1.50698 * 109.47238 * 278.35279 * 9 8 7 11 11 H 1.08005 * 119.99492 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00315 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00340 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99885 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47073 * 89.99794 * 14 12 10 16 16 H 1.48496 * 109.47304 * 209.99900 * 14 12 10 17 17 H 1.48507 * 109.47090 * 329.99768 * 14 12 10 18 18 C 1.34784 * 119.99650 * 353.27269 * 8 7 6 19 19 O 1.21560 * 120.00204 * 6.33691 * 18 8 7 20 20 C 1.47832 * 119.99686 * 186.32651 * 18 8 7 21 21 C 1.39711 * 120.07487 * 329.80732 * 20 18 8 22 22 C 1.38055 * 120.15999 * 180.27342 * 21 20 18 23 23 C 1.38089 * 120.30425 * 359.48833 * 22 21 20 24 24 C 1.50698 * 119.93050 * 180.23085 * 23 22 21 25 25 C 1.39716 * 120.14168 * 0.50993 * 23 22 21 26 26 C 1.43200 * 120.08298 * 179.72191 * 25 23 22 27 27 N 9.58987 * 161.43127 * 54.52902 * 5 1 2 28 28 C 1.39305 * 120.07304 * 149.82399 * 20 18 8 29 29 C 1.38863 * 119.96744 * 0.26916 * 7 6 5 30 30 C 1.38082 * 119.97935 * 359.45026 * 29 7 6 31 31 H 1.08993 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46814 * 299.99846 * 1 2 3 33 33 H 1.09000 * 109.47272 * 59.99629 * 1 2 3 34 34 H 1.08998 * 109.47053 * 240.00631 * 2 1 3 35 35 H 1.08996 * 109.47539 * 119.99946 * 2 1 3 36 36 H 1.08000 * 119.99143 * 0.02562 * 5 4 3 37 37 H 1.08009 * 120.00796 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46914 * 38.35386 * 9 8 7 39 39 H 1.08997 * 109.46914 * 158.34760 * 9 8 7 40 40 H 0.97007 * 120.00271 * 179.97438 * 13 12 10 41 41 H 1.08002 * 119.92317 * 359.97438 * 21 20 18 42 42 H 1.08004 * 119.84635 * 179.72256 * 22 21 20 43 43 H 1.08995 * 109.47502 * 270.27715 * 24 23 22 44 44 H 1.09004 * 109.46805 * 30.27978 * 24 23 22 45 45 H 1.09005 * 109.47112 * 150.27535 * 24 23 22 46 46 H 1.08002 * 120.14798 * 359.96347 * 28 20 18 47 47 H 1.08002 * 120.00832 * 179.70509 * 29 7 6 48 48 H 1.08006 * 119.98658 * 180.27550 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 3.8842 2.8075 0.0000 6 6 5.2531 2.9892 0.0001 7 6 6.0992 1.8882 0.0000 8 7 7.4876 2.0717 0.0006 9 6 8.3788 0.9185 0.1491 10 6 8.4986 0.5607 1.6081 11 1 7.9639 1.1347 2.3504 12 6 9.2898 -0.5000 1.9951 13 7 9.3947 -0.8119 3.2683 14 14 10.2140 -1.4932 0.7110 15 1 11.5552 -0.8940 0.4927 16 1 10.3680 -2.8924 1.1839 17 1 9.4536 -1.4827 -0.5646 18 6 8.0038 3.3093 -0.1356 19 8 7.2684 4.2771 -0.1431 20 6 9.4644 3.4896 -0.2756 21 6 10.3424 2.5852 0.3270 22 6 11.7067 2.7551 0.2022 23 6 12.2134 3.8126 -0.5271 24 6 13.7041 3.9871 -0.6622 25 6 11.3469 4.7246 -1.1350 26 6 11.8737 5.8242 -1.8860 27 7 12.2899 6.6966 -2.4870 28 6 9.9683 4.5618 -1.0084 29 6 5.5681 0.6052 -0.0056 30 6 4.1991 0.4251 0.0002 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.2260 3.6637 -0.0004 37 1 5.6655 3.9874 -0.0008 38 1 7.9703 0.0705 -0.4006 39 1 9.3637 1.1672 -0.2462 40 1 9.9512 -1.5584 3.5406 41 1 9.9529 1.7539 0.8960 42 1 12.3809 2.0555 0.6739 43 1 14.0732 4.6055 0.1559 44 1 14.1887 3.0113 -0.6274 45 1 13.9286 4.4705 -1.6131 46 1 9.2939 5.2635 -1.4765 47 1 6.2256 -0.2516 -0.0105 48 1 3.7859 -0.5728 0.0003 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408515810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = 49.983309 kcal Electronic energy + Delta-G solvation = -31903.383066 eV Core-core repulsion = 27697.611791 eV Total energy + Delta-G solvation = -4205.771275 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -40.85283 -39.70185 -38.89291 -37.00582 -36.38923 -35.47843 -33.05694 -32.83242 -31.74937 -31.29361 -30.54686 -29.03864 -28.33269 -27.03720 -24.22244 -23.70623 -23.11889 -22.80990 -21.43941 -21.26768 -20.07694 -18.23844 -18.00640 -17.36818 -16.91052 -16.02849 -15.97329 -15.85259 -15.60313 -15.19984 -14.86942 -14.53618 -14.33713 -14.15696 -13.89934 -13.58918 -13.23908 -13.21517 -13.20492 -13.15959 -13.06662 -12.81557 -12.71482 -12.64434 -12.43217 -12.28153 -12.16981 -11.98462 -11.70558 -11.68369 -11.43530 -11.27982 -11.08231 -10.85838 -10.53617 -10.46034 -10.27508 -9.92625 -9.13490 -9.06084 -8.99020 -8.84015 -8.60003 -8.53356 -7.03401 -6.51070 -4.57051 0.73316 1.07923 1.80180 1.83542 2.61804 2.78714 2.95547 3.05767 3.08386 3.26138 3.31973 3.45771 3.90872 3.92018 3.98793 4.31776 4.58510 4.74096 4.78673 4.87212 4.88381 4.94955 5.17156 5.17698 5.27731 5.32542 5.39886 5.44887 5.45605 5.56153 5.68115 5.70850 5.72865 5.83181 5.88559 5.92047 5.95667 5.97704 6.11073 6.20772 6.32809 6.44367 6.48478 6.53464 6.54851 6.76411 6.77672 6.89220 6.93875 7.05593 7.46256 7.48206 7.75153 7.77359 8.08296 8.48439 8.60601 9.02457 10.59493 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.003111 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.355590 B = 8997.263834 C =11474.929340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.322 6.322 4 C 0.092 3.908 5 C -0.136 4.136 6 C -0.136 4.136 7 C 0.136 3.864 8 N -0.518 5.518 9 C 0.172 3.828 10 C -0.550 4.550 11 H 0.087 0.913 12 C 0.086 3.914 13 N -0.869 5.869 14 Si 0.855 3.145 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.259 1.259 18 C 0.563 3.437 19 O -0.533 6.533 20 C -0.140 4.140 21 C -0.066 4.066 22 C -0.137 4.137 23 C -0.016 4.016 24 C -0.125 4.125 25 C -0.061 4.061 26 C 0.268 3.732 27 N -0.431 5.431 28 C -0.010 4.010 29 C -0.100 4.100 30 C -0.188 4.188 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.188 0.812 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.272 0.728 41 H 0.203 0.797 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.140 0.860 47 H 0.136 0.864 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 0.105 -6.686 7.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.237 6.237 4 C 0.047 3.953 5 C -0.155 4.155 6 C -0.155 4.155 7 C 0.042 3.958 8 N -0.236 5.236 9 C 0.052 3.948 10 C -0.588 4.588 11 H 0.105 0.895 12 C -0.121 4.121 13 N -0.504 5.504 14 Si 0.680 3.320 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.184 1.184 18 C 0.355 3.645 19 O -0.415 6.415 20 C -0.143 4.143 21 C -0.084 4.084 22 C -0.155 4.155 23 C -0.018 4.018 24 C -0.182 4.182 25 C -0.065 4.065 26 C -0.047 4.047 27 N -0.107 5.107 28 C -0.032 4.032 29 C -0.120 4.120 30 C -0.207 4.207 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.204 0.796 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.219 0.781 42 H 0.156 0.844 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.699 1.940 -7.476 8.182 hybrid contribution 0.427 -1.532 -0.121 1.595 sum -2.272 0.408 -7.597 7.940 Atomic orbital electron populations 1.21758 0.93235 1.02500 1.03269 1.22683 0.95388 0.82738 1.01287 1.86027 1.19621 1.28493 1.89544 1.18988 0.81708 0.94381 1.00252 1.20371 0.94913 0.94218 1.05989 1.22666 0.91542 1.02096 0.99207 1.17835 0.82350 0.93988 1.01651 1.45365 1.04808 1.08308 1.65143 1.20914 0.90573 0.84157 0.99141 1.21227 1.30910 1.16311 0.90316 0.89479 1.24878 0.95859 0.96093 0.95250 1.69865 1.37571 1.27955 1.14996 0.87152 0.81377 0.80963 0.82483 1.18836 1.20242 1.18354 1.18230 0.87620 0.82349 0.76329 1.90336 1.59130 1.40072 1.51917 1.19652 0.93130 0.97976 1.03564 1.23708 0.93065 0.98164 0.93428 1.21087 0.95761 0.98215 1.00387 1.20134 0.95559 0.92756 0.93386 1.20958 0.90988 1.03476 1.02729 1.15631 0.92862 0.93881 1.04104 1.25658 0.93228 0.92809 0.92992 1.81312 1.08404 1.10688 1.10285 1.21122 0.92908 0.95056 0.94091 1.20784 0.94518 0.96228 1.00506 1.20927 0.93548 0.97646 1.08608 0.90691 0.91658 0.91759 0.92378 0.92176 0.85664 0.79632 0.94028 0.92062 0.91725 0.78119 0.84366 0.90110 0.90267 0.91594 0.84263 0.84583 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.61 5.46 37.16 0.20 0.81 16 3 O -0.32 -4.77 10.14 -19.66 -0.20 -4.97 16 4 C 0.09 1.50 6.69 -39.22 -0.26 1.24 16 5 C -0.14 -2.28 9.98 -39.46 -0.39 -2.68 16 6 C -0.14 -2.51 9.05 -39.41 -0.36 -2.87 16 7 C 0.14 2.64 6.43 -83.64 -0.54 2.10 16 8 N -0.52 -10.09 2.70 -115.76 -0.31 -10.41 16 9 C 0.17 3.37 3.14 -5.20 -0.02 3.36 16 10 C -0.55 -12.69 7.96 -34.44 -0.27 -12.96 16 11 H 0.09 2.34 8.06 -52.48 -0.42 1.92 16 12 C 0.09 2.02 5.35 -17.83 -0.10 1.93 16 13 N -0.87 -22.41 13.96 55.43 0.77 -21.64 16 14 Si 0.86 16.86 27.37 -169.99 -4.65 12.21 16 15 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 16 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 17 H -0.26 -4.86 6.54 56.52 0.37 -4.49 16 18 C 0.56 10.62 7.41 -12.33 -0.09 10.53 16 19 O -0.53 -10.54 13.11 5.31 0.07 -10.47 16 20 C -0.14 -2.31 5.57 -105.03 -0.58 -2.89 16 21 C -0.07 -1.08 7.47 -39.10 -0.29 -1.37 16 22 C -0.14 -1.85 9.67 -39.70 -0.38 -2.23 16 23 C -0.02 -0.19 5.92 -104.13 -0.62 -0.81 16 24 C -0.12 -1.19 9.60 36.00 0.35 -0.85 16 25 C -0.06 -0.81 5.73 -106.99 -0.61 -1.42 16 26 C 0.27 3.64 13.78 -22.40 -0.31 3.34 16 27 N -0.43 -6.50 18.55 41.92 0.78 -5.72 16 28 C -0.01 -0.15 9.30 -38.75 -0.36 -0.51 16 29 C -0.10 -1.81 9.22 -39.41 -0.36 -2.18 16 30 C -0.19 -3.05 9.03 -39.46 -0.36 -3.40 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 35 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 36 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.19 3.56 4.51 -56.29 -0.25 3.30 16 38 H 0.04 0.81 5.46 -51.93 -0.28 0.52 16 39 H 0.06 1.13 3.50 -51.96 -0.18 0.95 16 40 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 41 H 0.20 3.77 2.96 -52.49 -0.16 3.62 16 42 H 0.14 1.66 8.06 -52.48 -0.42 1.23 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 45 H 0.07 0.64 7.07 -51.93 -0.37 0.27 16 46 H 0.14 1.88 7.92 -52.49 -0.42 1.46 16 47 H 0.14 2.46 6.19 -52.49 -0.32 2.14 16 48 H 0.12 1.69 6.29 -52.48 -0.33 1.36 16 LS Contribution 395.98 15.07 5.97 5.97 Total: -1.00 -27.06 395.98 -8.21 -35.27 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.65 Total: 11.52 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.98 Total: -11.77 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 1.24 Total: -37.76 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.13 Total: -15.44 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -4.65 Total: 12.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -27.06 -8.21 -35.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408515810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.255 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds