Wall clock time and date at job start Tue Mar 31 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35248 * 126.06980 * 2 1 4 4 C 1.40427 * 107.85893 * 180.18383 * 3 2 1 5 5 N 1.39995 * 125.97276 * 179.82829 * 4 3 2 6 6 S 1.65595 * 119.99659 * 179.71347 * 5 4 3 7 7 O 1.42105 * 106.40149 * 178.53963 * 6 5 4 8 8 O 1.42098 * 106.40317 * 311.45836 * 6 5 4 9 9 C 1.76204 * 107.21987 * 65.00198 * 6 5 4 10 10 C 1.38256 * 119.99369 * 269.72427 * 9 6 5 11 11 C 1.38221 * 119.99864 * 179.78865 * 10 9 6 12 12 C 1.38258 * 119.99528 * 0.45756 * 11 10 9 13 13 C 1.38217 * 120.00346 * 359.77717 * 12 11 10 14 14 N 1.48016 * 120.00448 * 179.97438 * 13 12 11 15 15 O 1.21793 * 120.00276 * 180.02562 * 14 13 12 16 16 O 1.21801 * 119.99831 * 0.02562 * 14 13 12 17 17 C 1.38209 * 120.00079 * 89.99558 * 9 6 5 18 18 N 1.31222 * 108.04775 * 359.56202 * 4 3 2 19 19 N 1.34953 * 126.06544 * 179.70859 * 2 1 3 20 20 C 1.46503 * 125.97338 * 359.97192 * 19 2 1 21 21 C 1.50697 * 109.47170 * 269.97830 * 20 19 2 22 22 H 1.08002 * 120.00298 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00161 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00133 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99879 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47224 * 90.00074 * 25 23 21 27 27 H 1.48496 * 109.47159 * 210.00655 * 25 23 21 28 28 H 1.48509 * 109.46854 * 330.00064 * 25 23 21 29 29 H 1.09004 * 109.46441 * 270.30005 * 1 2 3 30 30 H 1.09002 * 109.47166 * 30.29139 * 1 2 3 31 31 H 1.08996 * 109.47663 * 150.29553 * 1 2 3 32 32 H 1.07998 * 126.07126 * 0.03656 * 3 2 1 33 33 H 0.96997 * 120.00307 * 359.71115 * 5 4 3 34 34 H 1.08001 * 120.00743 * 359.97438 * 10 9 6 35 35 H 1.07994 * 120.00223 * 180.25749 * 11 10 9 36 36 H 1.08005 * 119.99910 * 179.78869 * 12 11 10 37 37 H 1.07994 * 120.00274 * 359.97438 * 17 9 6 38 38 H 1.09000 * 109.47177 * 29.98061 * 20 19 2 39 39 H 1.09000 * 109.47120 * 149.97877 * 20 19 2 40 40 H 0.97004 * 119.99847 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6544 -0.0043 5 7 4.7725 1.4736 -0.0091 6 16 6.2831 0.7952 -0.0066 7 8 7.2074 1.8737 -0.0473 8 8 6.2800 -0.1874 1.0199 9 6 6.4666 -0.0750 -1.5278 10 6 6.0996 -1.4053 -1.6116 11 6 6.2394 -2.0868 -2.8060 12 6 6.7551 -1.4407 -3.9142 13 6 7.1266 -0.1121 -3.8290 14 7 7.6792 0.5795 -5.0152 15 8 8.0070 1.7501 -4.9400 16 8 7.8063 -0.0221 -6.0666 17 6 6.9826 0.5708 -2.6354 18 7 3.6336 -0.6578 0.0028 19 7 2.3015 -1.0909 0.0055 20 6 1.8497 -2.4845 0.0132 21 6 1.6959 -2.9549 1.4366 22 1 1.9133 -2.2831 2.2539 23 6 1.2786 -4.2432 1.6957 24 7 1.1439 -4.6535 2.9379 25 14 0.9032 -5.4054 0.2822 26 1 2.1357 -6.1446 -0.0915 27 1 -0.1454 -6.3703 0.6999 28 1 0.4208 -4.6249 -0.8855 29 1 -0.3632 0.0054 1.0277 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 1.9721 2.1212 0.0006 33 1 4.6742 2.4386 -0.0139 34 1 5.7008 -1.9113 -0.7448 35 1 5.9489 -3.1248 -2.8727 36 1 6.8676 -1.9741 -4.8466 37 1 7.2730 1.6088 -2.5687 38 1 0.8907 -2.5584 -0.4995 39 1 2.5839 -3.1073 -0.4979 40 1 0.8499 -5.5598 3.1201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408515813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:31 Heat of formation + Delta-G solvation = 37.473166 kcal Electronic energy + Delta-G solvation = -30668.442732 eV Core-core repulsion = 26195.054916 eV Total energy + Delta-G solvation = -4473.387816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.088 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45890 -40.92547 -39.71936 -37.49083 -36.83672 -36.09299 -35.66683 -33.39406 -32.50229 -32.05552 -31.68445 -31.30389 -27.34001 -26.93771 -26.68633 -24.05337 -23.01842 -22.88581 -21.02058 -20.56052 -20.01163 -18.96214 -18.57703 -17.82074 -17.64380 -17.31508 -17.24982 -16.77679 -16.55561 -16.08070 -15.50606 -14.99579 -14.85804 -14.64795 -14.21013 -13.81144 -13.60280 -13.15062 -12.97871 -12.82838 -12.76147 -12.64752 -12.38391 -12.29049 -12.13959 -12.12076 -11.86782 -11.84177 -11.69457 -11.55581 -11.39904 -11.25768 -11.00815 -10.88618 -10.39088 -10.27450 -10.18577 -9.95942 -9.78199 -8.91117 -8.44824 -7.90913 -6.38053 -4.42718 -0.49411 -0.09104 0.21431 1.01116 1.06472 2.25200 2.41437 2.71974 2.98370 3.03258 3.07230 3.11985 3.23736 3.49725 3.86224 4.01686 4.08256 4.18483 4.44791 4.47186 4.66173 4.70997 4.91933 4.98711 5.01833 5.12400 5.42741 5.46085 5.53443 5.76918 5.81325 5.82349 5.84523 6.01896 6.12525 6.17247 6.31575 6.37028 6.73832 7.03776 7.12255 7.35842 7.52861 8.10348 8.15929 8.67952 9.15493 10.74276 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003301 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.887250 B = 8480.950232 C = 9482.763587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.116 3.884 3 C -0.302 4.302 4 C 0.284 3.716 5 N -1.010 6.010 6 S 2.696 3.304 7 O -0.948 6.948 8 O -0.911 6.911 9 C -0.676 4.676 10 C 0.056 3.944 11 C -0.136 4.136 12 C -0.005 4.005 13 C -0.073 4.073 14 N 0.031 4.969 15 O -0.156 6.156 16 O -0.160 6.160 17 C 0.045 3.955 18 N -0.324 5.324 19 N -0.308 5.308 20 C 0.231 3.769 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.081 3.919 24 N -0.881 5.881 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.265 1.265 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.435 0.565 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 9.186 -11.935 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.016 4.016 3 C -0.335 4.335 4 C 0.029 3.971 5 N -0.764 5.764 6 S 2.782 3.218 7 O -0.938 6.938 8 O -0.901 6.901 9 C -0.762 4.762 10 C 0.037 3.963 11 C -0.155 4.155 12 C -0.024 4.024 13 C -0.157 4.157 14 N 0.551 4.449 15 O -0.373 6.373 16 O -0.375 6.375 17 C 0.024 3.976 18 N -0.154 5.154 19 N -0.089 5.089 20 C 0.112 3.888 21 C -0.583 4.583 22 H 0.102 0.898 23 C -0.124 4.124 24 N -0.518 5.518 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.204 1.204 28 H -0.190 1.190 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.272 0.728 34 H 0.192 0.808 35 H 0.177 0.823 36 H 0.178 0.822 37 H 0.185 0.815 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.099 7.369 -10.594 14.273 hybrid contribution -0.785 0.319 -1.548 1.765 sum 5.314 7.688 -12.142 15.322 Atomic orbital electron populations 1.20426 0.87359 1.03071 1.03903 1.20954 0.94986 0.86711 0.98977 1.20589 0.89621 0.99156 1.24142 1.18516 0.86901 0.89748 1.01921 1.52546 1.19830 1.16611 1.87459 1.02273 0.71945 0.73704 0.73849 1.93638 1.59140 1.54059 1.86973 1.93709 1.84676 1.60430 1.51270 1.31239 1.15457 1.08160 1.21313 1.21785 0.83880 0.91248 0.99422 1.21494 1.00519 1.02026 0.91500 1.21395 0.89233 0.90975 1.00818 1.21127 1.12304 0.95054 0.87199 1.43519 0.98310 1.00963 1.02082 1.94561 1.52084 0.99742 1.90896 1.94539 1.58387 1.67536 1.17080 1.20740 0.87490 1.00914 0.88424 1.77177 1.00300 1.07628 1.30309 1.48522 1.00694 1.07297 1.52432 1.20094 0.95398 0.73208 1.00097 1.21137 1.47827 0.99222 0.90133 0.89825 1.24800 0.94439 0.97433 0.95714 1.69863 1.45114 1.18374 1.18432 0.86938 0.79095 0.81648 0.82538 1.19588 1.20437 1.18981 0.89615 0.90438 0.90778 0.83817 0.72797 0.80845 0.82269 0.82243 0.81471 0.92977 0.93583 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 10.11 36.01 0.36 -0.80 16 2 C 0.12 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.30 -4.52 10.74 -39.82 -0.43 -4.95 16 4 C 0.28 4.57 7.72 -154.54 -1.19 3.37 16 5 N -1.01 -12.64 5.91 31.39 0.19 -12.46 16 6 S 2.70 36.72 5.50 -107.50 -0.59 36.12 16 7 O -0.95 -13.30 17.28 -57.17 -0.99 -14.29 16 8 O -0.91 -15.98 16.49 -57.17 -0.94 -16.92 16 9 C -0.68 -8.39 5.91 -39.59 -0.23 -8.62 16 10 C 0.06 0.69 8.70 -39.58 -0.34 0.34 16 11 C -0.14 -1.34 10.05 -39.58 -0.40 -1.73 16 12 C -0.01 -0.05 9.56 -39.58 -0.38 -0.43 16 13 C -0.07 -0.85 6.85 -79.95 -0.55 -1.40 16 14 N 0.03 0.41 4.45 33.96 0.15 0.56 16 15 O -0.16 -2.14 18.45 -29.46 -0.54 -2.68 16 16 O -0.16 -2.10 18.45 -29.46 -0.54 -2.64 16 17 C 0.04 0.52 9.03 -39.58 -0.36 0.16 16 18 N -0.32 -6.09 10.07 31.41 0.32 -5.78 16 19 N -0.31 -6.01 3.59 -58.33 -0.21 -6.22 16 20 C 0.23 4.84 5.06 -5.19 -0.03 4.81 16 21 C -0.55 -14.00 9.94 -34.44 -0.34 -14.35 16 22 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 23 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.88 -24.87 13.96 55.43 0.77 -24.10 16 25 Si 0.87 18.54 27.47 -169.99 -4.67 13.87 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.16 6.54 56.52 0.37 -4.79 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.96 7.07 -51.93 -0.37 0.59 16 32 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.43 3.79 8.96 -34.47 -0.31 3.48 16 34 H 0.17 2.38 6.89 -52.49 -0.36 2.01 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.18 7.61 -52.48 -0.40 0.78 16 37 H 0.17 1.72 7.17 -52.49 -0.38 1.34 16 38 H 0.05 1.01 6.10 -51.93 -0.32 0.69 16 39 H 0.05 0.94 7.57 -51.93 -0.39 0.55 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -33.74 368.56 -9.86 -43.61 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.80 Total: 5.59 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -4.55 Total: -20.22 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 1.22 Total: -47.99 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -3.02 Total: -36.53 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.67 Total: 13.87 kcal Atomic # 16 Polarization: 36.72 SS G_CDS: -0.59 Total: 36.12 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.74 -9.86 -43.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408515813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.079 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds