Wall clock time and date at job start Tue Mar 31 2020 07:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35248 * 126.06980 * 2 1 4 4 C 1.40427 * 107.85893 * 180.18383 * 3 2 1 5 5 N 1.39995 * 125.97276 * 179.82829 * 4 3 2 6 6 S 1.65595 * 119.99659 * 179.71347 * 5 4 3 7 7 O 1.42105 * 106.40149 * 178.53963 * 6 5 4 8 8 O 1.42098 * 106.40317 * 311.45836 * 6 5 4 9 9 C 1.76204 * 107.21987 * 65.00198 * 6 5 4 10 10 C 1.38256 * 119.99369 * 269.72427 * 9 6 5 11 11 C 1.38221 * 119.99864 * 179.78865 * 10 9 6 12 12 C 1.38258 * 119.99528 * 0.45756 * 11 10 9 13 13 C 1.38217 * 120.00346 * 359.77717 * 12 11 10 14 14 N 1.48016 * 120.00448 * 179.97438 * 13 12 11 15 15 O 1.21793 * 120.00276 * 180.02562 * 14 13 12 16 16 O 1.21801 * 119.99831 * 0.02562 * 14 13 12 17 17 C 1.38209 * 120.00079 * 89.99558 * 9 6 5 18 18 N 1.31222 * 108.04775 * 359.56202 * 4 3 2 19 19 N 1.34953 * 126.06544 * 179.70859 * 2 1 3 20 20 C 1.46503 * 125.97338 * 359.97192 * 19 2 1 21 21 C 1.50697 * 109.47170 * 269.97830 * 20 19 2 22 22 H 1.08002 * 120.00298 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00161 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00133 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99879 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47224 * 90.00074 * 25 23 21 27 27 H 1.48496 * 109.47159 * 210.00655 * 25 23 21 28 28 H 1.48509 * 109.46854 * 330.00064 * 25 23 21 29 29 H 1.09004 * 109.46441 * 270.30005 * 1 2 3 30 30 H 1.09002 * 109.47166 * 30.29139 * 1 2 3 31 31 H 1.08996 * 109.47663 * 150.29553 * 1 2 3 32 32 H 1.07998 * 126.07126 * 0.03656 * 3 2 1 33 33 H 0.96997 * 120.00307 * 359.71115 * 5 4 3 34 34 H 1.08001 * 120.00743 * 359.97438 * 10 9 6 35 35 H 1.07994 * 120.00223 * 180.25749 * 11 10 9 36 36 H 1.08005 * 119.99910 * 179.78869 * 12 11 10 37 37 H 1.07994 * 120.00274 * 359.97438 * 17 9 6 38 38 H 1.09000 * 109.47177 * 29.98061 * 20 19 2 39 39 H 1.09000 * 109.47120 * 149.97877 * 20 19 2 40 40 H 0.97004 * 119.99847 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6544 -0.0043 5 7 4.7725 1.4736 -0.0091 6 16 6.2831 0.7952 -0.0066 7 8 7.2074 1.8737 -0.0473 8 8 6.2800 -0.1874 1.0199 9 6 6.4666 -0.0750 -1.5278 10 6 6.0996 -1.4053 -1.6116 11 6 6.2394 -2.0868 -2.8060 12 6 6.7551 -1.4407 -3.9142 13 6 7.1266 -0.1121 -3.8290 14 7 7.6792 0.5795 -5.0152 15 8 8.0070 1.7501 -4.9400 16 8 7.8063 -0.0221 -6.0666 17 6 6.9826 0.5708 -2.6354 18 7 3.6336 -0.6578 0.0028 19 7 2.3015 -1.0909 0.0055 20 6 1.8497 -2.4845 0.0132 21 6 1.6959 -2.9549 1.4366 22 1 1.9133 -2.2831 2.2539 23 6 1.2786 -4.2432 1.6957 24 7 1.1439 -4.6535 2.9379 25 14 0.9032 -5.4054 0.2822 26 1 2.1357 -6.1446 -0.0915 27 1 -0.1454 -6.3703 0.6999 28 1 0.4208 -4.6249 -0.8855 29 1 -0.3632 0.0054 1.0277 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 1.9721 2.1212 0.0006 33 1 4.6742 2.4386 -0.0139 34 1 5.7008 -1.9113 -0.7448 35 1 5.9489 -3.1248 -2.8727 36 1 6.8676 -1.9741 -4.8466 37 1 7.2730 1.6088 -2.5687 38 1 0.8907 -2.5584 -0.4995 39 1 2.5839 -3.1073 -0.4979 40 1 0.8499 -5.5598 3.1201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408515813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:27 Heat of formation + Delta-G solvation = 14.509160 kcal Electronic energy + Delta-G solvation = -30669.438526 eV Core-core repulsion = 26195.054916 eV Total energy + Delta-G solvation = -4474.383610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.088 amu Computer time = 6.84 seconds Orbital eigenvalues (eV) -43.43165 -42.20714 -40.61298 -38.67370 -37.83460 -37.30476 -36.91284 -35.18180 -33.42597 -32.95620 -32.92397 -32.82044 -28.94117 -27.97240 -27.79534 -24.95396 -24.64839 -23.84058 -22.30101 -21.69134 -21.09775 -19.95965 -19.72464 -19.20260 -18.85288 -18.76878 -18.31846 -17.84065 -17.54261 -17.20001 -16.84445 -16.34769 -16.08256 -15.71471 -15.47287 -14.95055 -14.72744 -14.54346 -14.27498 -13.92688 -13.87445 -13.68747 -13.63331 -13.51323 -13.48284 -13.33751 -13.29407 -12.85657 -12.84880 -12.62095 -12.52173 -12.42931 -12.41960 -12.24711 -11.83525 -11.68171 -11.54549 -11.20360 -10.86711 -10.81774 -9.74118 -9.22641 -8.36454 -6.47679 -1.44216 -1.13864 -0.72618 0.06267 0.12061 0.98157 1.25130 1.37925 1.39713 1.48910 1.76902 1.78403 2.02624 2.29148 2.39403 2.89952 2.96515 3.14600 3.32486 3.50903 3.52889 3.63083 3.74338 3.87787 4.19094 4.28875 4.36857 4.47880 4.55252 4.58815 4.69002 4.72338 4.86099 4.90350 4.92439 5.07470 5.20636 5.21755 5.27904 5.64148 5.86626 5.99074 6.33928 6.35790 6.57957 6.81752 7.16086 8.80321 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003301 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.887250 B = 8480.950232 C = 9482.763587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.103 3.897 3 C -0.297 4.297 4 C 0.284 3.716 5 N -0.997 5.997 6 S 2.710 3.290 7 O -0.955 6.955 8 O -0.957 6.957 9 C -0.678 4.678 10 C 0.040 3.960 11 C -0.125 4.125 12 C 0.009 3.991 13 C -0.081 4.081 14 N 0.032 4.968 15 O -0.181 6.181 16 O -0.153 6.153 17 C 0.043 3.957 18 N -0.356 5.356 19 N -0.337 5.337 20 C 0.239 3.761 21 C -0.549 4.549 22 H 0.024 0.976 23 C 0.019 3.981 24 N -0.940 5.940 25 Si 0.949 3.051 26 H -0.264 1.264 27 H -0.281 1.281 28 H -0.228 1.228 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.181 0.819 33 H 0.451 0.549 34 H 0.156 0.844 35 H 0.190 0.810 36 H 0.190 0.810 37 H 0.176 0.824 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 9.278 -15.305 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C -0.329 4.329 4 C 0.028 3.972 5 N -0.754 5.754 6 S 2.800 3.200 7 O -0.945 6.945 8 O -0.947 6.947 9 C -0.766 4.766 10 C 0.021 3.979 11 C -0.144 4.144 12 C -0.010 4.010 13 C -0.165 4.165 14 N 0.550 4.450 15 O -0.392 6.392 16 O -0.372 6.372 17 C 0.023 3.977 18 N -0.187 5.187 19 N -0.119 5.119 20 C 0.120 3.880 21 C -0.587 4.587 22 H 0.042 0.958 23 C -0.180 4.180 24 N -0.579 5.579 25 Si 0.770 3.230 26 H -0.189 1.189 27 H -0.207 1.207 28 H -0.150 1.150 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.199 0.801 33 H 0.293 0.707 34 H 0.173 0.827 35 H 0.207 0.793 36 H 0.207 0.793 37 H 0.194 0.806 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.348 7.590 -13.936 16.746 hybrid contribution -0.483 0.381 -0.457 0.767 sum 4.865 7.971 -14.393 17.157 Atomic orbital electron populations 1.20565 0.85062 1.05051 1.03935 1.21694 0.96648 0.86255 0.98183 1.21054 0.88697 1.00583 1.22557 1.18814 0.88246 0.89485 1.00691 1.52358 1.18589 1.17358 1.87145 1.01517 0.71792 0.72993 0.73726 1.93621 1.59388 1.54189 1.87287 1.93662 1.85386 1.61766 1.53855 1.30827 1.16875 1.08301 1.20574 1.21787 0.84666 0.91385 1.00096 1.21788 0.99296 1.03160 0.90179 1.21751 0.87351 0.90066 1.01812 1.21266 1.12848 0.95807 0.86607 1.43672 0.98104 1.00892 1.02337 1.94568 1.53274 1.00265 1.91137 1.94521 1.57880 1.67353 1.17441 1.20805 0.87246 1.01417 0.88256 1.77124 1.00490 1.09217 1.31823 1.48401 1.01413 1.07297 1.54756 1.19834 0.96758 0.74647 0.96808 1.21280 1.47344 0.98633 0.91439 0.95808 1.25856 0.93915 0.99434 0.98838 1.70050 1.47109 1.19107 1.21607 0.85721 0.78986 0.78855 0.79464 1.18876 1.20675 1.15036 0.90436 0.86590 0.90671 0.80129 0.70744 0.82669 0.79255 0.79322 0.80646 0.90470 0.92786 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.10 10.11 71.24 0.72 -1.38 16 2 C 0.10 3.25 6.92 41.39 0.29 3.54 16 3 C -0.30 -8.28 10.74 22.11 0.24 -8.05 16 4 C 0.28 8.91 7.72 133.39 1.03 9.94 16 5 N -1.00 -24.27 5.91 -54.60 -0.32 -24.59 16 6 S 2.71 74.38 5.50 -56.49 -0.31 74.07 16 7 O -0.95 -26.60 17.28 -128.00 -2.21 -28.81 16 8 O -0.96 -35.00 16.49 -128.00 -2.11 -37.11 16 9 C -0.68 -16.42 5.91 22.27 0.13 -16.29 16 10 C 0.04 0.96 8.70 22.27 0.19 1.15 16 11 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 12 C 0.01 0.15 9.56 22.27 0.21 0.36 16 13 C -0.08 -1.73 6.85 36.38 0.25 -1.48 16 14 N 0.03 0.77 4.45 -46.46 -0.21 0.57 16 15 O -0.18 -4.78 18.45 18.90 0.35 -4.43 16 16 O -0.15 -3.66 18.45 18.89 0.35 -3.31 16 17 C 0.04 0.95 9.03 22.27 0.20 1.15 16 18 N -0.36 -13.47 10.07 -54.54 -0.55 -14.02 16 19 N -0.34 -13.02 3.59 -338.44 -1.22 -14.23 16 20 C 0.24 9.87 5.06 85.63 0.43 10.30 16 21 C -0.55 -29.13 9.94 25.60 0.25 -28.87 16 22 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 23 C 0.02 1.01 5.47 84.66 0.46 1.47 16 24 N -0.94 -55.26 13.96 21.45 0.30 -54.96 16 25 Si 0.95 37.51 27.47 68.60 1.88 39.40 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.23 -7.58 6.54 99.48 0.65 -6.93 16 29 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.76 7.07 -2.39 -0.02 1.75 16 32 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 33 H 0.45 7.25 8.96 -96.75 -0.87 6.38 16 34 H 0.16 4.36 6.89 -2.91 -0.02 4.34 16 35 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.19 1.97 7.61 -2.91 -0.02 1.95 16 37 H 0.18 3.45 7.17 -2.91 -0.02 3.43 16 38 H 0.08 2.78 6.10 -2.39 -0.01 2.77 16 39 H 0.05 2.13 7.57 -2.39 -0.02 2.11 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -77.59 368.56 0.80 -76.79 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.21 Total: 20.69 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.64 Total: -30.07 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -2.00 Total: -107.23 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -3.63 Total: -73.66 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 1.88 Total: 39.40 kcal Atomic # 16 Polarization: 74.38 SS G_CDS: -0.31 Total: 74.07 kcal Total: -77.59 0.80 -76.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408515813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.301 kcal (2) G-P(sol) polarization free energy of solvation -77.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.84 seconds