Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47086 * 101.43869 * 3 2 1 5 5 N 1.46500 * 109.47474 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00111 * 269.99885 * 5 4 3 7 7 C 1.50698 * 109.47201 * 269.99899 * 6 5 4 8 8 H 1.07995 * 119.99926 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99651 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99897 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 120.00446 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.46772 * 90.00078 * 11 9 7 13 13 H 1.48496 * 109.47243 * 209.99990 * 11 9 7 14 14 H 1.48497 * 109.46885 * 330.00270 * 11 9 7 15 15 C 1.34778 * 120.00199 * 89.99899 * 5 4 3 16 16 O 1.21275 * 120.00359 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99472 * 359.97438 * 15 5 4 18 18 N 1.46904 * 109.46502 * 173.90775 * 17 15 5 19 19 C 1.46752 * 111.00205 * 293.73585 * 18 17 15 20 20 C 1.53424 * 108.59068 * 285.48939 * 19 18 17 21 21 O 1.43135 * 107.90253 * 296.73186 * 20 19 18 22 22 C 1.36209 * 116.68922 * 45.33432 * 21 20 19 23 23 C 1.38948 * 118.71848 * 165.22856 * 22 21 20 24 24 F 1.35096 * 119.92464 * 359.76031 * 23 22 21 25 25 C 1.38503 * 120.15314 * 179.72860 * 23 22 21 26 26 F 1.35102 * 120.02398 * 179.97438 * 25 23 22 27 27 C 1.38429 * 119.95659 * 359.97136 * 25 23 22 28 28 C 1.38083 * 120.09557 * 0.32069 * 27 25 23 29 29 C 1.38872 * 121.38579 * 345.04578 * 22 21 20 30 30 H 1.09000 * 109.47338 * 341.43890 * 3 2 1 31 31 H 1.09001 * 109.47358 * 221.43624 * 3 2 1 32 32 H 1.09000 * 109.47677 * 59.99465 * 4 3 2 33 33 H 1.09001 * 109.47397 * 299.99584 * 4 3 2 34 34 H 1.09009 * 109.47049 * 30.00175 * 6 5 4 35 35 H 1.09001 * 109.47227 * 149.99416 * 6 5 4 36 36 H 0.97000 * 120.00610 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47362 * 53.91164 * 17 15 5 38 38 H 1.08997 * 109.47353 * 293.90720 * 17 15 5 39 39 H 1.09002 * 109.61970 * 165.75950 * 19 18 17 40 40 H 1.09001 * 109.61633 * 45.22099 * 19 18 17 41 41 H 1.09000 * 109.77761 * 177.12745 * 20 19 18 42 42 H 1.09004 * 109.81805 * 56.35255 * 20 19 18 43 43 H 1.07997 * 119.95099 * 180.02562 * 27 25 23 44 44 H 1.08005 * 119.83718 * 179.75684 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.2870 -1.4138 5 7 4.5828 0.2882 -1.4138 6 6 5.3143 1.5324 -1.1624 7 6 5.5649 2.2406 -2.4688 8 1 5.2147 1.8070 -3.3938 9 6 6.2421 3.4415 -2.4831 10 7 6.4604 4.0598 -3.6231 11 14 6.8484 4.1911 -0.8830 12 1 8.2218 3.7041 -0.5975 13 1 6.8631 5.6710 -1.0040 14 1 5.9421 3.7939 0.2243 15 6 5.2578 -0.8552 -1.6451 16 8 6.4705 -0.8543 -1.6446 17 6 4.5053 -2.1352 -1.9031 18 7 5.4541 -3.1958 -2.2678 19 6 6.0957 -2.9075 -3.5557 20 6 5.0817 -3.1698 -4.6769 21 8 4.7489 -4.5617 -4.6524 22 6 4.4875 -5.1068 -3.4319 23 6 3.8658 -6.3481 -3.3743 24 9 3.5290 -6.9867 -4.5162 25 6 3.5911 -6.9326 -2.1491 26 9 2.9860 -8.1393 -2.0962 27 6 3.9371 -6.2794 -0.9786 28 6 4.5497 -5.0430 -1.0307 29 6 4.8324 -4.4504 -2.2577 30 1 2.9718 -0.9734 0.3271 31 1 2.9710 0.7712 0.6801 32 1 2.7540 1.2609 -1.7411 33 1 2.7549 -0.4836 -2.0940 34 1 4.7246 2.1747 -0.5081 35 1 6.2668 1.3037 -0.6845 36 1 6.9371 4.9044 -3.6333 37 1 3.7990 -1.9833 -2.7192 38 1 3.9636 -2.4260 -1.0031 39 1 6.9618 -3.5563 -3.6865 40 1 6.4095 -1.8640 -3.5828 41 1 5.5223 -2.9128 -5.6402 42 1 4.1847 -2.5732 -4.5108 43 1 3.7232 -6.7354 -0.0233 44 1 4.8142 -4.5353 -0.1149 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408521251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -77.900186 kcal Electronic energy + Delta-G solvation = -33194.557399 eV Core-core repulsion = 28363.585238 eV Total energy + Delta-G solvation = -4830.972161 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.134 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -49.64496 -48.70331 -41.57302 -39.51536 -37.74504 -37.12630 -36.38486 -35.39128 -32.93550 -31.17450 -31.09690 -30.37556 -29.83535 -27.89679 -26.05408 -24.74012 -24.21828 -23.07830 -22.48739 -20.85611 -18.95790 -18.57146 -18.10717 -17.94551 -17.72619 -17.01265 -16.89442 -16.71479 -16.38379 -16.14320 -15.90160 -15.35509 -15.23738 -15.15302 -14.88772 -14.73767 -14.58727 -14.47467 -13.97439 -13.85377 -13.77708 -13.35520 -12.96906 -12.89078 -12.68629 -12.62949 -12.50447 -12.35688 -12.24722 -11.91850 -11.76556 -11.70603 -11.39963 -11.25256 -11.19398 -10.97089 -10.66677 -10.32040 -9.85215 -9.69061 -9.15922 -8.74321 -8.72823 -8.28497 -8.08844 -6.22668 -4.23413 0.51907 0.70681 2.56219 2.64508 2.66719 2.82929 2.99247 3.08293 3.19194 3.24277 3.28057 3.50295 3.68890 3.97134 4.00913 4.22574 4.26648 4.41679 4.55478 4.62021 4.69992 4.74158 4.78735 4.84093 4.94973 4.98959 5.07177 5.11281 5.23135 5.27642 5.38215 5.56378 5.58403 5.59265 5.69112 5.81730 5.86518 6.13560 6.36014 6.48129 6.62753 6.74271 6.94329 7.01452 7.42367 7.43788 7.87315 8.28673 8.62118 8.79167 9.36473 10.90273 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.002864 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.052327 B = 9775.753665 C =11078.804734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.213 3.787 3 C -0.050 4.050 4 C 0.114 3.886 5 N -0.590 5.590 6 C 0.216 3.784 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.510 3.490 16 O -0.509 6.509 17 C 0.029 3.971 18 N -0.460 5.460 19 C 0.012 3.988 20 C 0.018 3.982 21 O -0.297 6.297 22 C 0.085 3.915 23 C 0.052 3.948 24 F -0.122 7.122 25 C 0.084 3.916 26 F -0.126 7.126 27 C -0.143 4.143 28 C -0.065 4.065 29 C 0.050 3.950 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.151 0.849 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -17.228 5.418 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.105 4.105 3 C -0.092 4.092 4 C -0.012 4.012 5 N -0.322 5.322 6 C 0.096 3.904 7 C -0.573 4.573 8 H 0.093 0.907 9 C -0.128 4.128 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.295 3.705 16 O -0.384 6.384 17 C -0.099 4.099 18 N -0.176 5.176 19 C -0.115 4.115 20 C -0.058 4.058 21 O -0.210 6.210 22 C 0.035 3.965 23 C 0.031 3.969 24 F -0.100 7.100 25 C 0.063 3.937 26 F -0.104 7.104 27 C -0.162 4.162 28 C -0.085 4.085 29 C -0.048 4.048 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.091 0.909 43 H 0.169 0.831 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.847 -17.122 5.449 18.896 hybrid contribution 0.106 0.432 -0.032 0.445 sum -5.741 -16.691 5.417 18.463 Atomic orbital electron populations 1.81239 1.12990 1.09006 1.08345 1.29024 0.95037 0.93081 0.93369 1.19875 0.81589 1.05924 1.01790 1.21383 0.81705 1.04803 0.93334 1.47899 1.04961 1.09597 1.69780 1.19756 0.92582 0.80238 0.97848 1.21253 1.37615 1.05472 0.92968 0.90723 1.24849 0.95122 0.96660 0.96201 1.69879 1.41020 1.16940 1.25333 0.86876 0.80190 0.78693 0.84065 1.19841 1.21092 1.18955 1.19985 0.88217 0.84017 0.78250 1.90720 1.13268 1.85152 1.49241 1.22432 0.93788 0.90763 1.02960 1.58829 1.28791 0.98790 1.31189 1.23173 0.96900 1.06894 0.84524 1.23818 0.99958 0.78918 1.03133 1.86378 1.83862 1.26321 1.24470 1.18702 0.97880 0.93401 0.86487 1.16782 1.05870 0.92417 0.81834 1.91524 1.90411 1.80705 1.47363 1.17268 1.00587 0.83348 0.92481 1.91535 1.80718 1.41108 1.97050 1.20868 1.02266 0.95939 0.97152 1.20809 0.96863 0.93765 0.97087 1.18675 1.00088 0.94138 0.91911 0.87510 0.86472 0.88218 0.90521 0.94855 0.94085 0.92401 0.91110 0.87246 0.88223 0.85743 0.85682 0.90940 0.83143 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.83 18.54 42.15 0.78 -5.05 16 2 C 0.21 2.19 15.43 -20.76 -0.32 1.87 16 3 C -0.05 -0.40 6.03 -29.52 -0.18 -0.58 16 4 C 0.11 1.24 5.19 -4.04 -0.02 1.22 16 5 N -0.59 -8.99 2.46 -175.06 -0.43 -9.42 16 6 C 0.22 4.30 4.23 -5.19 -0.02 4.28 16 7 C -0.53 -13.39 9.94 -34.44 -0.34 -13.74 16 8 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.89 -25.56 13.96 55.43 0.77 -24.78 16 11 Si 0.87 19.56 27.47 -169.99 -4.67 14.89 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 15 C 0.51 7.74 7.09 -10.98 -0.08 7.66 16 16 O -0.51 -9.97 14.40 5.56 0.08 -9.89 16 17 C 0.03 0.31 4.00 -4.97 -0.02 0.29 16 18 N -0.46 -5.41 4.30 -172.15 -0.74 -6.15 16 19 C 0.01 0.15 5.62 -3.69 -0.02 0.13 16 20 C 0.02 0.19 7.06 37.38 0.26 0.46 16 21 O -0.30 -3.74 10.22 -20.41 -0.21 -3.94 16 22 C 0.09 1.02 6.48 -39.08 -0.25 0.77 16 23 C 0.05 0.63 7.30 -39.22 -0.29 0.35 16 24 F -0.12 -1.65 16.96 2.25 0.04 -1.61 16 25 C 0.08 0.87 7.30 -39.41 -0.29 0.59 16 26 F -0.13 -1.39 17.18 2.25 0.04 -1.35 16 27 C -0.14 -1.14 10.01 -39.57 -0.40 -1.53 16 28 C -0.07 -0.55 9.31 -39.30 -0.37 -0.91 16 29 C 0.05 0.53 5.13 -83.54 -0.43 0.10 16 30 H 0.11 0.60 7.41 -51.93 -0.38 0.22 16 31 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.08 0.68 6.28 -51.93 -0.33 0.35 16 34 H 0.03 0.62 7.13 -51.92 -0.37 0.25 16 35 H 0.04 0.89 6.85 -51.93 -0.36 0.53 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.07 0.69 5.45 -51.93 -0.28 0.40 16 38 H 0.11 0.86 6.87 -51.93 -0.36 0.50 16 39 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.12 1.78 6.04 -51.93 -0.31 1.47 16 41 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 0.73 6.61 -51.93 -0.34 0.39 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -33.07 379.45 -6.33 -39.40 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.86 Total: -0.63 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -2.85 Total: 2.82 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.38 Total: -45.41 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.13 Total: -13.83 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.96 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.07 -6.33 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408521251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.504 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds