Wall clock time and date at job start Tue Mar 31 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86809 * 119.99790 * 2 1 4 4 H 1.48502 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47044 * 299.99663 * 3 2 1 6 6 H 1.48505 * 109.46923 * 59.99815 * 3 2 1 7 7 C 1.38897 * 120.00604 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00216 * 168.91658 * 7 2 1 9 9 N 1.37085 * 119.99289 * 348.92115 * 7 2 1 10 10 C 1.36209 * 124.88352 * 338.52247 * 9 7 2 11 11 C 1.36194 * 109.72622 * 180.02562 * 10 9 7 12 12 C 1.47052 * 126.70141 * 180.02562 * 11 10 9 13 13 N 1.29652 * 120.00197 * 180.02562 * 12 11 10 14 14 O 1.41592 * 120.00235 * 179.97438 * 13 12 11 15 15 C 1.42898 * 114.00475 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47549 * 180.02562 * 15 14 13 17 17 C 1.38250 * 119.99517 * 269.72404 * 16 15 14 18 18 C 1.38221 * 119.99919 * 179.78770 * 17 16 15 19 19 C 1.38258 * 119.99422 * 0.46507 * 18 17 16 20 20 C 1.38210 * 120.00141 * 359.76919 * 19 18 17 21 21 N 1.48017 * 119.99728 * 180.02562 * 20 19 18 22 22 O 1.21807 * 119.99958 * 180.02562 * 21 20 19 23 23 O 1.21802 * 120.00206 * 0.02562 * 21 20 19 24 24 C 1.38208 * 119.99999 * 89.99838 * 16 15 14 25 25 C 1.47544 * 106.59958 * 0.25828 * 11 10 9 26 26 C 1.39209 * 133.91974 * 179.74373 * 25 11 10 27 27 C 1.37897 * 119.68005 * 180.02562 * 26 25 11 28 28 C 1.38675 * 120.29173 * 359.97438 * 27 26 25 29 29 C 1.37918 * 120.61362 * 359.65293 * 28 27 26 30 30 C 1.38311 * 124.87388 * 158.52754 * 9 7 2 31 31 H 0.96997 * 120.00054 * 0.02562 * 1 2 3 32 32 H 1.08005 * 125.13680 * 0.02562 * 10 9 7 33 33 H 1.07999 * 120.00304 * 0.02600 * 12 11 10 34 34 H 1.09010 * 109.47071 * 300.00396 * 15 14 13 35 35 H 1.08996 * 109.47129 * 59.99685 * 15 14 13 36 36 H 1.08000 * 120.00411 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.00258 * 180.25696 * 18 17 16 38 38 H 1.07999 * 119.99544 * 179.79118 * 19 18 17 39 39 H 1.07999 * 120.00228 * 359.97438 * 24 16 15 40 40 H 1.07998 * 120.16234 * 0.02562 * 26 25 11 41 41 H 1.08001 * 119.84956 * 179.97438 * 27 26 25 42 42 H 1.08002 * 119.69414 * 180.02562 * 28 27 26 43 43 H 1.08003 * 120.03504 * 179.87936 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8891 2.3965 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0735 -1.2115 -0.1792 9 7 1.3423 -2.3788 0.2292 10 6 0.1397 -2.4828 0.8603 11 6 -0.2363 -3.7904 0.9203 12 6 -1.4683 -4.3239 1.5203 13 7 -1.6967 -5.6001 1.5055 14 8 -2.8827 -6.1138 2.0837 15 6 -3.0036 -7.5350 1.9966 16 6 -4.2956 -7.9697 2.6391 17 6 -4.3262 -8.2866 3.9844 18 6 -5.5122 -8.6811 4.5747 19 6 -6.6657 -8.7679 3.8175 20 6 -6.6340 -8.4557 2.4715 21 7 -7.8691 -8.5482 1.6611 22 8 -7.8411 -8.2735 0.4747 23 8 -8.9135 -8.8989 2.1805 24 6 -5.4487 -8.0569 1.8821 25 6 0.8365 -4.5678 0.2710 26 6 1.0345 -5.9241 0.0277 27 6 2.1771 -6.3417 -0.6215 28 6 3.1260 -5.4173 -1.0317 29 6 2.9386 -4.0701 -0.8037 30 6 1.7948 -3.6303 -0.1477 31 1 -0.4850 0.8400 -0.0004 32 1 -0.4296 -1.6536 1.2536 33 1 -2.1830 -3.6527 1.9732 34 1 -2.9996 -7.8366 0.9491 35 1 -2.1653 -8.0032 2.5126 36 1 -3.4243 -8.2223 4.5750 37 1 -5.5370 -8.9247 5.6265 38 1 -7.5916 -9.0794 4.2780 39 1 -5.4239 -7.8132 0.8302 40 1 0.2967 -6.6458 0.3458 41 1 2.3337 -7.3933 -0.8114 42 1 4.0172 -5.7550 -1.5398 43 1 3.6846 -3.3585 -1.1255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408594498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:53 Heat of formation + Delta-G solvation = 95.504888 kcal Electronic energy + Delta-G solvation = -29870.649194 eV Core-core repulsion = 25465.592876 eV Total energy + Delta-G solvation = -4405.056317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.121 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.38937 -40.31069 -39.93965 -37.03162 -36.76002 -36.31754 -34.31972 -33.20502 -32.36446 -32.03397 -30.47624 -28.87293 -28.03523 -26.87240 -26.45539 -25.10608 -23.01938 -22.20923 -21.89592 -21.76153 -20.63453 -19.23765 -18.85077 -18.63576 -17.86156 -17.73425 -17.00098 -16.85406 -16.13356 -15.83791 -15.48601 -15.00116 -14.83291 -14.51639 -14.44452 -14.36344 -13.74247 -13.70847 -13.23062 -13.14220 -13.05489 -12.62300 -12.42749 -12.04570 -11.90105 -11.78198 -11.63183 -11.57750 -11.45256 -11.34806 -11.34024 -11.22235 -10.82199 -10.75671 -10.54467 -10.14261 -9.98251 -9.83372 -9.70351 -9.22789 -9.18025 -8.42861 -7.35730 -7.08586 -6.70671 -4.55878 -0.43799 0.47513 1.06794 1.14898 1.85915 2.29238 2.66833 2.73575 2.91702 2.95951 2.97471 3.30995 3.64024 4.00220 4.03075 4.10883 4.38798 4.47510 4.52159 4.56931 4.63908 4.79442 4.89273 5.16114 5.19915 5.37223 5.38935 5.48897 5.56047 5.69413 5.74409 5.79637 5.91049 5.91783 6.01742 6.18861 6.26153 6.33777 6.53911 6.68607 6.85539 6.90751 6.93431 6.96914 7.28471 7.38280 7.41481 7.45430 7.75574 7.88645 8.20241 8.25781 8.69073 9.09907 10.02969 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.001838 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.378652 B =15234.356594 C =16446.930717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.341 4.341 8 H 0.112 0.888 9 N -0.272 5.272 10 C 0.136 3.864 11 C -0.249 4.249 12 C 0.227 3.773 13 N -0.383 5.383 14 O -0.265 6.265 15 C 0.123 3.877 16 C -0.080 4.080 17 C -0.045 4.045 18 C -0.120 4.120 19 C -0.053 4.053 20 C -0.048 4.048 21 N 0.029 4.971 22 O -0.157 6.157 23 O -0.163 6.163 24 C -0.033 4.033 25 C -0.068 4.068 26 C -0.080 4.080 27 C -0.160 4.160 28 C -0.139 4.139 29 C -0.103 4.103 30 C 0.046 3.954 31 H 0.284 0.716 32 H 0.180 0.820 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -11.852 7.755 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.129 0.871 9 N 0.068 4.932 10 C -0.009 4.009 11 C -0.258 4.258 12 C 0.023 3.977 13 N -0.138 5.138 14 O -0.274 6.274 15 C 0.046 3.954 16 C -0.083 4.083 17 C -0.064 4.064 18 C -0.139 4.139 19 C -0.072 4.072 20 C -0.131 4.131 21 N 0.549 4.451 22 O -0.374 6.374 23 O -0.379 6.379 24 C -0.052 4.052 25 C -0.074 4.074 26 C -0.099 4.099 27 C -0.180 4.180 28 C -0.158 4.158 29 C -0.123 4.123 30 C -0.061 4.061 31 H 0.095 0.905 32 H 0.197 0.803 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.776 -12.145 7.931 15.272 hybrid contribution -0.517 1.398 -0.081 1.493 sum -5.294 -10.747 7.850 14.323 Atomic orbital electron populations 1.69824 1.06358 1.29453 1.41964 1.25566 0.95788 1.00826 0.94411 0.85598 0.79678 0.79378 0.78639 1.18633 1.19863 1.19662 1.19988 0.94335 0.81816 1.50743 0.87060 1.40083 1.14340 1.03995 1.34824 1.22197 0.88206 0.95706 0.94824 1.17898 0.96577 0.92108 1.19242 1.23377 0.93267 0.91147 0.89898 1.77140 1.01709 1.15382 1.19539 1.89728 1.38366 1.20219 1.79072 1.20878 0.91996 0.82537 0.99995 1.19771 0.94655 0.99925 0.93902 1.21659 0.99047 0.91767 0.93889 1.21233 0.91180 1.00522 1.00922 1.21107 1.00829 0.94692 0.90619 1.21099 0.85457 1.13920 0.92644 1.43623 1.02476 0.97704 1.01333 1.94573 1.92355 1.51980 0.98494 1.94524 1.19412 1.49121 1.74805 1.21036 0.89306 0.92591 1.02315 1.18796 0.94244 0.92463 1.01867 1.20406 0.96912 0.93896 0.98687 1.20664 0.95663 0.98238 1.03405 1.20500 0.99500 0.92249 1.03581 1.19942 0.95917 0.95345 1.01115 1.18471 0.97698 0.85470 1.04483 0.90503 0.80321 0.87574 0.91455 0.91275 0.83600 0.83259 0.82907 0.82655 0.86560 0.87547 0.87275 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.80 10.86 55.49 0.60 -19.20 16 2 C 0.04 0.99 5.35 -17.49 -0.09 0.90 16 3 Si 0.94 17.36 29.57 -169.99 -5.03 12.33 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.34 -8.07 9.89 -14.96 -0.15 -8.22 16 8 H 0.11 2.51 7.85 -52.49 -0.41 2.09 16 9 N -0.27 -6.51 2.89 -59.48 -0.17 -6.69 16 10 C 0.14 3.12 9.85 -16.34 -0.16 2.95 16 11 C -0.25 -5.39 6.27 -103.27 -0.65 -6.04 16 12 C 0.23 4.37 11.13 -14.90 -0.17 4.21 16 13 N -0.38 -7.16 10.13 32.04 0.32 -6.83 16 14 O -0.27 -4.37 11.35 -11.47 -0.13 -4.50 16 15 C 0.12 1.50 6.52 36.01 0.23 1.74 16 16 C -0.08 -0.81 5.51 -104.63 -0.58 -1.39 16 17 C -0.05 -0.35 9.70 -39.58 -0.38 -0.73 16 18 C -0.12 -0.77 10.05 -39.58 -0.40 -1.16 16 19 C -0.05 -0.43 9.56 -39.58 -0.38 -0.81 16 20 C -0.05 -0.52 6.85 -79.95 -0.55 -1.07 16 21 N 0.03 0.38 4.45 33.96 0.15 0.53 16 22 O -0.16 -2.23 18.45 -29.46 -0.54 -2.77 16 23 O -0.16 -2.14 18.45 -29.46 -0.54 -2.68 16 24 C -0.03 -0.36 9.21 -39.59 -0.36 -0.72 16 25 C -0.07 -1.51 6.25 -104.91 -0.66 -2.17 16 26 C -0.08 -1.59 9.81 -39.35 -0.39 -1.97 16 27 C -0.16 -2.84 10.03 -39.54 -0.40 -3.24 16 28 C -0.14 -2.46 10.02 -39.54 -0.40 -2.86 16 29 C -0.10 -2.08 9.93 -39.42 -0.39 -2.48 16 30 C 0.05 1.05 6.73 -83.83 -0.56 0.49 16 31 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 32 H 0.18 4.03 6.35 -52.48 -0.33 3.70 16 33 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.07 0.81 8.09 -51.92 -0.42 0.39 16 35 H 0.07 0.76 8.08 -51.93 -0.42 0.35 16 36 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.15 0.97 7.61 -52.49 -0.40 0.57 16 39 H 0.16 1.66 7.61 -52.49 -0.40 1.26 16 40 H 0.12 2.18 7.24 -52.49 -0.38 1.80 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.11 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -27.89 389.62 -10.32 -38.21 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.44 Total: 8.29 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -6.42 Total: -22.57 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.91 Total: -32.19 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.22 Total: -9.96 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.89 -10.32 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408594498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.720 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds