Wall clock time and date at job start Tue Mar 31 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35951 * 117.00290 * 2 1 4 4 C 1.38176 * 120.01366 * 359.97438 * 3 2 1 5 5 C 1.39692 * 119.86820 * 180.02562 * 4 3 2 6 6 C 1.47748 * 120.05405 * 180.02562 * 5 4 3 7 7 C 1.39940 * 119.99197 * 295.02670 * 6 5 4 8 8 C 1.43200 * 121.14736 * 359.97438 * 7 6 5 9 9 N 4.93784 * 75.49296 * 318.99997 * 2 1 3 10 10 C 1.46992 * 117.70263 * 179.97438 * 7 6 5 11 11 N 1.31284 * 120.72271 * 180.27230 * 10 7 6 12 12 N 1.37169 * 118.55255 * 0.22264 * 10 7 6 13 13 H 0.97006 * 119.01152 * 180.41090 * 12 10 7 14 14 C 1.37085 * 121.97920 * 0.13160 * 12 10 7 15 15 C 1.34478 * 121.16145 * 359.22734 * 14 12 10 16 16 C 1.50844 * 122.87724 * 181.45818 * 15 14 12 17 17 C 1.52628 * 110.86192 * 341.39638 * 16 15 14 18 18 C 1.53379 * 108.10019 * 50.94891 * 17 16 15 19 19 C 1.50970 * 116.24573 * 178.73750 * 14 12 10 20 20 C 1.39754 * 119.89304 * 0.27953 * 5 4 3 21 21 C 1.37740 * 120.02560 * 359.45880 * 20 5 4 22 22 C 1.38995 * 120.13647 * 0.52256 * 21 20 5 23 23 O 1.35654 * 119.94669 * 179.73953 * 22 21 20 24 24 C 1.34764 * 117.00119 * 354.37619 * 23 22 21 25 25 H 1.08000 * 120.00351 * 5.06943 * 24 23 22 26 26 C 1.38696 * 120.00060 * 185.06545 * 24 23 22 27 27 N 1.31533 * 119.99859 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99868 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47334 * 60.00272 * 28 26 24 30 30 H 1.48500 * 109.47034 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.47621 * 300.00141 * 28 26 24 32 32 H 1.08998 * 109.47764 * 300.00502 * 1 2 3 33 33 H 1.09008 * 109.47149 * 60.00040 * 1 2 3 34 34 H 1.08994 * 109.47357 * 180.02562 * 1 2 3 35 35 H 1.07997 * 120.06142 * 0.02562 * 4 3 2 36 36 H 0.96999 * 120.00275 * 179.97438 * 11 10 7 37 37 H 1.09000 * 109.19652 * 101.74809 * 16 15 14 38 38 H 1.08998 * 109.20126 * 221.03726 * 16 15 14 39 39 H 1.08997 * 109.73404 * 170.59981 * 17 16 15 40 40 H 1.09000 * 109.73602 * 291.24536 * 17 16 15 41 41 H 1.08996 * 109.72901 * 50.73348 * 18 17 16 42 42 H 1.09004 * 109.72479 * 171.36029 * 18 17 16 43 43 H 1.09004 * 109.18968 * 282.17096 * 19 14 12 44 44 H 1.09002 * 109.19696 * 41.44352 * 19 14 12 45 45 H 1.07997 * 119.98237 * 179.73122 * 20 5 4 46 46 H 1.07999 * 119.93039 * 180.25739 * 21 20 5 47 47 H 0.96996 * 119.99470 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2940 2.3704 -0.0005 5 6 1.9314 3.6134 -0.0011 6 6 1.1311 4.8553 -0.0011 7 6 0.3207 5.1653 -1.0991 8 6 0.2492 4.2969 -2.2355 9 7 0.1920 3.6078 -3.1362 10 6 -0.4544 6.4131 -1.0456 11 7 -1.2378 6.7592 -2.0407 12 7 -0.3421 7.2075 0.0670 13 1 -0.8553 8.0295 0.1119 14 6 0.4691 6.8720 1.1198 15 6 1.1834 5.7326 1.1123 16 6 2.0628 5.3099 2.2627 17 6 2.3852 6.4976 3.1654 18 6 1.0669 7.1937 3.5261 19 6 0.5172 7.8544 2.2651 20 6 3.3273 3.6803 -0.0070 21 6 4.0729 2.5222 -0.0010 22 6 3.4399 1.2847 0.0000 23 8 4.1780 0.1465 0.0005 24 6 5.5134 0.2833 -0.1176 25 1 5.9570 1.2680 -0.1247 26 6 6.3184 -0.8406 -0.2299 27 7 5.7782 -2.0399 -0.2217 28 14 8.1695 -0.6511 -0.3929 29 1 8.7020 0.0536 0.8009 30 1 8.7974 -1.9929 -0.4958 31 1 8.4811 0.1367 -1.6125 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5139 -0.8901 34 1 -0.3634 -1.0276 0.0005 35 1 0.2154 2.3153 -0.0005 36 1 -1.7449 7.5848 -1.9942 37 1 1.5481 4.5461 2.8455 38 1 2.9914 4.8953 1.8705 39 1 2.8768 6.1474 4.0729 40 1 3.0378 7.1939 2.6386 41 1 0.3525 6.4590 3.8975 42 1 1.2472 7.9502 4.2898 43 1 1.1580 8.6927 1.9914 44 1 -0.4891 8.2233 2.4634 45 1 3.8216 4.6405 -0.0118 46 1 5.1515 2.5757 -0.0014 47 1 6.3412 -2.8258 -0.3006 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408983475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:18 Heat of formation + Delta-G solvation = 35.221054 kcal Electronic energy + Delta-G solvation = -32585.869464 eV Core-core repulsion = 28314.032138 eV Total energy + Delta-G solvation = -4271.837326 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.03193 -39.61035 -37.60238 -37.38999 -36.92316 -35.74080 -33.85357 -33.25741 -32.33175 -30.52830 -29.53804 -29.02600 -28.74966 -26.76300 -25.57095 -24.48391 -23.50760 -22.97607 -21.62704 -20.95523 -20.58831 -18.73469 -18.14141 -17.85696 -17.60188 -16.92855 -16.36459 -15.58289 -15.48406 -15.18266 -15.11614 -14.66895 -14.56387 -14.33419 -14.10450 -13.94942 -13.67131 -13.51803 -13.42247 -13.18126 -13.02800 -12.94553 -12.51146 -12.47201 -12.28231 -12.02154 -11.78039 -11.55877 -11.50001 -11.25659 -11.15821 -11.04785 -10.95087 -10.83316 -10.62093 -10.48694 -10.42473 -10.31510 -9.82821 -9.73832 -9.48322 -8.89205 -8.01373 -7.47618 -7.00252 -6.52855 -4.07153 0.40127 1.65548 2.03842 2.13961 2.55390 2.90874 3.09208 3.11505 3.14127 3.24269 3.89278 3.94424 3.96637 4.00709 4.13000 4.34237 4.37534 4.51336 4.52772 4.78153 4.85341 4.96135 5.02555 5.10000 5.13534 5.23322 5.35022 5.39916 5.47767 5.55484 5.59033 5.60389 5.61441 5.72471 5.76065 5.86718 5.89433 5.98034 6.06364 6.09109 6.18221 6.24949 6.28489 6.46449 6.62985 6.78894 6.90857 6.95460 7.10912 7.19069 7.48455 7.86719 8.01723 8.10798 8.18937 8.90370 9.59574 10.63422 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.003001 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.504402 B = 9326.687434 C =10515.915275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.135 4.135 5 C -0.159 4.159 6 C 0.148 3.852 7 C -0.098 4.098 8 C 0.289 3.711 9 N -0.425 5.425 10 C 0.452 3.548 11 N -0.766 5.766 12 N -0.645 5.645 13 H 0.409 0.591 14 C 0.181 3.819 15 C -0.173 4.173 16 C -0.067 4.067 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.062 4.062 21 C -0.218 4.218 22 C 0.147 3.853 23 O -0.152 6.152 24 C -0.393 4.393 25 H 0.095 0.905 26 C 0.042 3.958 27 N -0.849 5.849 28 Si 0.943 3.057 29 H -0.268 1.268 30 H -0.277 1.277 31 H -0.268 1.268 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.330 0.670 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.139 0.861 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 20.622 10.315 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C 0.014 3.986 4 C -0.155 4.155 5 C -0.160 4.160 6 C 0.140 3.860 7 C -0.106 4.106 8 C -0.026 4.026 9 N -0.101 5.101 10 C 0.180 3.820 11 N -0.398 5.398 12 N -0.266 5.266 13 H 0.245 0.755 14 C 0.073 3.927 15 C -0.181 4.181 16 C -0.104 4.104 17 C -0.161 4.161 18 C -0.154 4.154 19 C -0.127 4.127 20 C -0.080 4.080 21 C -0.238 4.238 22 C 0.091 3.909 23 O -0.053 6.053 24 C -0.468 4.468 25 H 0.113 0.887 26 C -0.165 4.165 27 N -0.481 5.481 28 Si 0.767 3.233 29 H -0.193 1.193 30 H -0.202 1.202 31 H -0.193 1.193 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.133 0.867 46 H 0.156 0.844 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.364 18.330 7.915 22.053 hybrid contribution 0.160 1.773 0.792 1.948 sum -9.203 20.103 8.707 23.763 Atomic orbital electron populations 1.22909 0.80213 1.03063 1.00357 1.86238 1.19511 1.26135 1.89583 1.18000 0.89386 0.84449 1.06721 1.20611 0.98369 0.90523 1.05949 1.17748 0.92660 0.89907 1.15723 1.19273 0.86891 0.91121 0.88755 1.16228 1.07428 0.93977 0.92980 1.24436 0.93400 0.92561 0.92174 1.81145 1.08713 1.09872 1.10348 1.20467 0.91038 0.88911 0.81622 1.70644 1.18412 1.25707 1.25041 1.43517 1.42409 1.24305 1.16376 0.75462 1.20128 0.89854 0.94565 0.88130 1.18756 1.05890 0.95088 0.98351 1.20400 0.99383 0.97578 0.93055 1.21619 0.96763 0.97678 1.00021 1.21524 0.98062 1.00235 0.95571 1.20751 1.02882 0.96560 0.92527 1.20575 0.91443 0.97490 0.98495 1.20799 1.00657 0.90578 1.11718 1.18811 0.88212 0.87772 0.96109 1.84014 1.19600 1.25583 1.76104 1.21402 0.78441 0.94914 1.52061 0.88722 1.25366 1.00686 0.94189 0.96214 1.70045 1.36571 0.97768 1.43742 0.85755 0.80101 0.78129 0.79345 1.19300 1.20185 1.19309 0.93535 0.93508 0.88932 0.86326 0.85439 0.90525 0.89135 0.90843 0.91434 0.90939 0.90782 0.89057 0.89962 0.86655 0.84397 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.30 -6.64 10.28 -34.17 -0.35 -6.99 16 3 C 0.06 1.30 6.70 -39.11 -0.26 1.04 16 4 C -0.14 -2.46 7.99 -39.06 -0.31 -2.77 16 5 C -0.16 -2.60 3.91 -104.90 -0.41 -3.01 16 6 C 0.15 2.03 5.38 -103.99 -0.56 1.47 16 7 C -0.10 -1.45 5.97 -103.79 -0.62 -2.07 16 8 C 0.29 5.28 13.60 -22.49 -0.31 4.97 16 9 N -0.42 -8.69 18.53 41.82 0.78 -7.91 16 10 C 0.45 5.60 7.98 -154.51 -1.23 4.37 16 11 N -0.77 -10.33 13.66 32.32 0.44 -9.89 16 12 N -0.64 -5.17 5.32 -6.93 -0.04 -5.21 16 13 H 0.41 1.94 8.56 -40.82 -0.35 1.59 16 14 C 0.18 1.41 6.66 -81.44 -0.54 0.87 16 15 C -0.17 -1.78 5.74 -104.50 -0.60 -2.38 16 16 C -0.07 -0.62 5.00 -28.00 -0.14 -0.76 16 17 C -0.12 -0.79 6.01 -26.73 -0.16 -0.95 16 18 C -0.12 -0.54 6.00 -26.74 -0.16 -0.70 16 19 C -0.09 -0.38 5.70 -27.96 -0.16 -0.54 16 20 C -0.06 -1.03 7.78 -39.20 -0.31 -1.33 16 21 C -0.22 -4.40 9.14 -39.48 -0.36 -4.76 16 22 C 0.15 3.50 6.67 -38.81 -0.26 3.24 16 23 O -0.15 -4.29 9.53 -14.05 -0.13 -4.43 16 24 C -0.39 -10.64 9.48 30.90 0.29 -10.34 16 25 H 0.10 2.30 5.19 -52.49 -0.27 2.03 16 26 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 27 N -0.85 -24.57 13.67 55.48 0.76 -23.81 16 28 Si 0.94 19.87 29.55 -169.99 -5.02 14.84 16 29 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 30 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 31 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 32 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.05 0.73 7.66 -51.92 -0.40 0.33 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.12 1.97 6.28 -52.49 -0.33 1.64 16 36 H 0.33 3.45 8.83 -40.82 -0.36 3.09 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.98 5.31 -51.93 -0.28 0.70 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 41 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.12 1.59 7.72 -52.49 -0.40 1.18 16 46 H 0.14 2.72 5.62 -52.49 -0.29 2.42 16 47 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -34.89 393.07 -8.44 -43.33 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.60 Total: 5.32 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -5.20 Total: -11.18 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 1.94 Total: -46.82 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.49 Total: -11.42 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.89 -8.44 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408983475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.552 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds