Wall clock time and date at job start Tue Mar 31 2020 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48491 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46846 * 300.00225 * 3 2 1 6 6 H 1.48492 * 109.47068 * 59.99958 * 3 2 1 7 7 C 1.38657 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99937 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00077 * 0.26922 * 7 2 1 10 10 C 1.35597 * 116.99916 * 174.66495 * 9 7 2 11 11 C 1.38741 * 120.16043 * 5.59825 * 10 9 7 12 12 C 1.38105 * 120.07929 * 179.70208 * 11 10 9 13 13 C 1.38529 * 120.41227 * 0.59511 * 12 11 10 14 14 C 1.37872 * 120.31777 * 359.68316 * 13 12 11 15 15 C 1.39692 * 119.91077 * 0.02562 * 14 13 12 16 16 C 1.47284 * 120.20280 * 179.97438 * 15 14 13 17 17 N 1.29851 * 120.00339 * 180.02562 * 16 15 14 18 18 N 1.40097 * 120.00318 * 179.97438 * 17 16 15 19 19 C 1.36876 * 127.20865 * 269.68641 * 18 17 16 20 20 S 1.76201 * 126.39647 * 359.95951 * 19 18 17 21 21 N 1.31485 * 107.20149 * 179.83668 * 19 18 17 22 22 N 1.28500 * 110.14676 * 0.44086 * 21 19 18 23 23 C 1.31365 * 110.01975 * 359.72278 * 22 21 19 24 24 C 1.47780 * 126.47746 * 180.02562 * 23 22 21 25 25 C 1.39600 * 120.14972 * 164.72139 * 24 23 22 26 26 C 1.37957 * 119.84996 * 179.76578 * 25 24 23 27 27 C 1.38358 * 120.14960 * 0.50383 * 26 25 24 28 28 C 1.38362 * 120.29503 * 359.75053 * 27 26 25 29 29 C 1.37955 * 120.15051 * 359.97438 * 28 27 26 30 30 H 0.96999 * 119.99720 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.95457 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.78909 * 180.32216 * 12 11 10 33 33 H 1.08003 * 119.84161 * 179.69795 * 13 12 11 34 34 H 1.08001 * 120.04577 * 179.97438 * 14 13 12 35 35 H 1.08001 * 120.00171 * 0.02562 * 16 15 14 36 36 H 1.41000 * 99.99656 * 90.00202 * 20 19 18 37 37 H 1.08003 * 120.07629 * 359.97438 * 25 24 23 38 38 H 1.08008 * 119.92329 * 180.24860 * 26 25 24 39 39 H 1.07996 * 119.85272 * 179.71803 * 27 26 25 40 40 H 1.08005 * 119.92533 * 180.02562 * 28 27 26 41 41 H 1.08000 * 120.07397 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8909 2.3964 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3347 -2.3682 -0.0065 10 6 2.0692 -3.5025 -0.1191 11 6 3.4551 -3.4399 -0.1049 12 6 4.2014 -4.5968 -0.2134 13 6 3.5753 -5.8250 -0.3494 14 6 2.1992 -5.9061 -0.3712 15 6 1.4311 -4.7449 -0.2564 16 6 -0.0395 -4.8240 -0.2795 17 7 -0.7496 -3.7421 -0.1730 18 7 -2.1484 -3.8173 -0.1955 19 6 -2.9638 -3.7415 -1.2923 20 16 -2.4502 -3.5276 -2.9642 21 7 -4.2017 -3.8609 -0.8655 22 7 -4.2182 -3.9957 0.4123 23 6 -2.9917 -3.9769 0.8824 24 6 -2.5919 -4.1037 2.2995 25 6 -1.2655 -4.3852 2.6312 26 6 -0.8981 -4.4974 3.9562 27 6 -1.8429 -4.3421 4.9549 28 6 -3.1604 -4.0682 4.6329 29 6 -3.5402 -3.9478 3.3121 30 1 -0.4850 0.8401 0.0004 31 1 3.9507 -2.4857 -0.0036 32 1 5.2800 -4.5431 -0.1966 33 1 4.1680 -6.7235 -0.4384 34 1 1.7156 -6.8659 -0.4778 35 1 -0.5272 -5.7818 -0.3851 36 1 -2.3017 -4.8759 -3.3490 37 1 -0.5278 -4.5114 1.8525 38 1 0.1287 -4.7112 4.2144 39 1 -1.5509 -4.4354 5.9905 40 1 -3.8929 -3.9477 5.4173 41 1 -4.5688 -3.7337 3.0621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409061506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:34 Heat of formation + Delta-G solvation = 172.792565 kcal Electronic energy + Delta-G solvation = -29991.362239 eV Core-core repulsion = 25966.984327 eV Total energy + Delta-G solvation = -4024.377912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.089 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.43857 -39.42719 -38.82280 -36.84329 -36.26780 -32.75267 -32.45243 -32.16736 -30.82429 -29.93362 -29.08736 -28.83168 -25.68460 -24.46147 -23.27529 -22.97600 -21.88122 -21.69810 -20.98786 -19.95346 -18.27084 -18.22040 -17.22885 -16.95218 -16.64352 -16.02882 -15.63820 -15.19247 -14.86673 -14.76204 -14.47037 -14.25132 -14.01865 -13.85185 -13.63399 -13.37304 -13.15587 -12.81839 -12.73949 -12.11273 -12.01980 -11.89476 -11.53945 -11.41522 -11.25257 -11.18509 -11.06866 -10.97729 -10.86759 -10.76580 -10.58297 -10.22293 -9.73412 -9.63988 -9.08646 -9.06406 -8.84505 -8.35242 -8.19355 -8.09340 -7.49691 -6.66821 -4.23310 0.87134 1.06042 1.28825 1.51829 1.79583 2.12781 2.37070 2.58422 2.69938 3.00390 3.01859 3.07716 3.09048 3.76065 3.96555 4.21207 4.31342 4.68049 4.82260 4.84728 4.95866 5.04229 5.13963 5.21009 5.36935 5.41189 5.49272 5.54471 5.60718 5.80669 5.84374 5.87599 5.94928 6.03723 6.14030 6.25350 6.37315 6.46799 6.53711 6.58161 6.63388 6.80432 6.89272 7.00970 7.05268 7.10002 7.47820 7.69835 8.08486 8.72135 8.73940 9.37744 10.44121 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.006572 B = 0.004282 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4259.222160 B = 6536.863522 C = 6700.139987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.048 3.952 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.394 4.394 8 H 0.097 0.903 9 O -0.110 6.110 10 C 0.173 3.827 11 C -0.229 4.229 12 C -0.048 4.048 13 C -0.225 4.225 14 C -0.025 4.025 15 C -0.180 4.180 16 C 0.180 3.820 17 N -0.216 5.216 18 N -0.305 5.305 19 C 0.146 3.854 20 S 0.012 5.988 21 N -0.243 5.243 22 N -0.280 5.280 23 C 0.235 3.765 24 C -0.015 4.015 25 C -0.093 4.093 26 C -0.116 4.116 27 C -0.108 4.108 28 C -0.125 4.125 29 C -0.076 4.076 30 H 0.274 0.726 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -9.809 3.535 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.470 4.470 8 H 0.115 0.885 9 O -0.005 6.005 10 C 0.111 3.889 11 C -0.248 4.248 12 C -0.067 4.067 13 C -0.245 4.245 14 C -0.045 4.045 15 C -0.186 4.186 16 C -0.021 4.021 17 N -0.022 5.022 18 N -0.078 5.078 19 C -0.228 4.228 20 S 0.162 5.838 21 N -0.091 5.091 22 N -0.127 5.127 23 C -0.031 4.031 24 C -0.018 4.018 25 C -0.113 4.113 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.143 4.143 29 C -0.096 4.096 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.048 0.952 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.287 -8.289 2.731 8.732 hybrid contribution 1.579 -0.739 0.565 1.833 sum 1.866 -9.028 3.296 9.791 Atomic orbital electron populations 1.70119 1.05914 1.28160 1.39990 1.25404 0.95838 0.99047 0.95938 0.85667 0.79251 0.80114 0.78602 1.18847 1.19786 1.19915 1.21597 0.92076 0.80785 1.52563 0.88537 1.84114 1.33930 1.11216 1.71238 1.19359 0.90077 0.87359 0.92093 1.21178 0.93386 0.99400 1.10875 1.20960 0.98863 0.92254 0.94614 1.20470 0.93834 0.97332 1.12816 1.20714 0.93699 0.95362 0.94758 1.17181 0.87563 0.92330 1.21557 1.25244 0.95058 0.94499 0.87319 1.77108 0.81785 1.20735 1.22591 1.48517 1.05361 1.48095 1.05830 1.25959 0.89379 1.13207 0.94260 1.87207 1.88028 1.10710 0.97885 1.74710 1.15553 1.15268 1.03557 1.74382 1.16218 1.19424 1.02652 1.23106 0.86359 1.03630 0.90009 1.17470 0.94281 1.03590 0.86438 1.21563 0.94695 0.97246 0.97771 1.21037 0.99780 1.00422 0.92157 1.21282 0.93299 0.98758 0.99316 1.21043 0.96414 1.01050 0.95811 1.21172 0.99387 0.97361 0.91656 0.91562 0.84989 0.86993 0.86947 0.86554 0.87527 0.95209 0.85388 0.85480 0.85818 0.85465 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.39 13.67 55.48 0.76 -21.63 16 2 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 3 Si 0.94 19.11 29.55 -169.99 -5.02 14.09 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -9.88 9.49 30.89 0.29 -9.59 16 8 H 0.10 2.21 5.21 -52.49 -0.27 1.94 16 9 O -0.11 -2.77 7.64 0.60 0.00 -2.76 16 10 C 0.17 3.63 6.66 -38.60 -0.26 3.37 16 11 C -0.23 -4.24 9.16 -39.44 -0.36 -4.60 16 12 C -0.05 -0.72 10.03 -39.52 -0.40 -1.11 16 13 C -0.23 -3.13 10.03 -39.61 -0.40 -3.53 16 14 C -0.02 -0.36 9.79 -39.17 -0.38 -0.74 16 15 C -0.18 -3.25 5.88 -104.89 -0.62 -3.86 16 16 C 0.18 3.24 8.74 -14.71 -0.13 3.11 16 17 N -0.22 -4.64 8.02 32.13 0.26 -4.38 16 18 N -0.30 -6.51 3.49 -10.24 -0.04 -6.54 16 19 C 0.15 3.04 8.52 -87.85 -0.75 2.29 16 20 S 0.01 0.21 26.25 -107.50 -2.82 -2.61 16 21 N -0.24 -5.17 12.22 30.78 0.38 -4.79 16 22 N -0.28 -5.90 11.97 32.63 0.39 -5.51 16 23 C 0.23 4.85 7.81 -153.50 -1.20 3.65 16 24 C -0.02 -0.28 5.87 -104.98 -0.62 -0.89 16 25 C -0.09 -1.63 9.47 -39.18 -0.37 -2.00 16 26 C -0.12 -1.69 10.03 -39.64 -0.40 -2.09 16 27 C -0.11 -1.36 10.04 -39.49 -0.40 -1.75 16 28 C -0.13 -1.61 10.03 -39.64 -0.40 -2.00 16 29 C -0.08 -1.18 9.70 -39.18 -0.38 -1.56 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.13 2.45 5.64 -52.49 -0.30 2.15 16 32 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.08 1.18 9.55 96.90 0.93 2.11 16 37 H 0.13 2.40 4.30 -52.48 -0.23 2.17 16 38 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.13 1.98 7.94 -52.49 -0.42 1.57 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -30.69 378.23 -9.63 -40.31 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -2.38 Total: 8.33 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -6.85 Total: -20.19 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 1.75 Total: -42.86 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: 0.00 Total: -2.76 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.82 Total: -2.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.69 -9.63 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409061506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.105 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds