Wall clock time and date at job start Tue Mar 31 2020 07:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48491 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46846 * 300.00225 * 3 2 1 6 6 H 1.48492 * 109.47068 * 59.99958 * 3 2 1 7 7 C 1.38657 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99937 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00077 * 0.26922 * 7 2 1 10 10 C 1.35597 * 116.99916 * 174.66495 * 9 7 2 11 11 C 1.38741 * 120.16043 * 5.59825 * 10 9 7 12 12 C 1.38105 * 120.07929 * 179.70208 * 11 10 9 13 13 C 1.38529 * 120.41227 * 0.59511 * 12 11 10 14 14 C 1.37872 * 120.31777 * 359.68316 * 13 12 11 15 15 C 1.39692 * 119.91077 * 0.02562 * 14 13 12 16 16 C 1.47284 * 120.20280 * 179.97438 * 15 14 13 17 17 N 1.29851 * 120.00339 * 180.02562 * 16 15 14 18 18 N 1.40097 * 120.00318 * 179.97438 * 17 16 15 19 19 C 1.36876 * 127.20865 * 269.68641 * 18 17 16 20 20 S 1.76201 * 126.39647 * 359.95951 * 19 18 17 21 21 N 1.31485 * 107.20149 * 179.83668 * 19 18 17 22 22 N 1.28500 * 110.14676 * 0.44086 * 21 19 18 23 23 C 1.31365 * 110.01975 * 359.72278 * 22 21 19 24 24 C 1.47780 * 126.47746 * 180.02562 * 23 22 21 25 25 C 1.39600 * 120.14972 * 164.72139 * 24 23 22 26 26 C 1.37957 * 119.84996 * 179.76578 * 25 24 23 27 27 C 1.38358 * 120.14960 * 0.50383 * 26 25 24 28 28 C 1.38362 * 120.29503 * 359.75053 * 27 26 25 29 29 C 1.37955 * 120.15051 * 359.97438 * 28 27 26 30 30 H 0.96999 * 119.99720 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.95457 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.78909 * 180.32216 * 12 11 10 33 33 H 1.08003 * 119.84161 * 179.69795 * 13 12 11 34 34 H 1.08001 * 120.04577 * 179.97438 * 14 13 12 35 35 H 1.08001 * 120.00171 * 0.02562 * 16 15 14 36 36 H 1.41000 * 99.99656 * 90.00202 * 20 19 18 37 37 H 1.08003 * 120.07629 * 359.97438 * 25 24 23 38 38 H 1.08008 * 119.92329 * 180.24860 * 26 25 24 39 39 H 1.07996 * 119.85272 * 179.71803 * 27 26 25 40 40 H 1.08005 * 119.92533 * 180.02562 * 28 27 26 41 41 H 1.08000 * 120.07397 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8909 2.3964 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3347 -2.3682 -0.0065 10 6 2.0692 -3.5025 -0.1191 11 6 3.4551 -3.4399 -0.1049 12 6 4.2014 -4.5968 -0.2134 13 6 3.5753 -5.8250 -0.3494 14 6 2.1992 -5.9061 -0.3712 15 6 1.4311 -4.7449 -0.2564 16 6 -0.0395 -4.8240 -0.2795 17 7 -0.7496 -3.7421 -0.1730 18 7 -2.1484 -3.8173 -0.1955 19 6 -2.9638 -3.7415 -1.2923 20 16 -2.4502 -3.5276 -2.9642 21 7 -4.2017 -3.8609 -0.8655 22 7 -4.2182 -3.9957 0.4123 23 6 -2.9917 -3.9769 0.8824 24 6 -2.5919 -4.1037 2.2995 25 6 -1.2655 -4.3852 2.6312 26 6 -0.8981 -4.4974 3.9562 27 6 -1.8429 -4.3421 4.9549 28 6 -3.1604 -4.0682 4.6329 29 6 -3.5402 -3.9478 3.3121 30 1 -0.4850 0.8401 0.0004 31 1 3.9507 -2.4857 -0.0036 32 1 5.2800 -4.5431 -0.1966 33 1 4.1680 -6.7235 -0.4384 34 1 1.7156 -6.8659 -0.4778 35 1 -0.5272 -5.7818 -0.3851 36 1 -2.3017 -4.8759 -3.3490 37 1 -0.5278 -4.5114 1.8525 38 1 0.1287 -4.7112 4.2144 39 1 -1.5509 -4.4354 5.9905 40 1 -3.8929 -3.9477 5.4173 41 1 -4.5688 -3.7337 3.0621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409061506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:33 Heat of formation + Delta-G solvation = 157.017394 kcal Electronic energy + Delta-G solvation = -29992.046302 eV Core-core repulsion = 25966.984327 eV Total energy + Delta-G solvation = -4025.061975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.089 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.98113 -40.90147 -39.99219 -38.35399 -37.73894 -34.37229 -33.97282 -33.54696 -31.97718 -31.33388 -30.49214 -30.25792 -27.40798 -25.89670 -24.60167 -24.32817 -23.33511 -23.01299 -22.37304 -21.34738 -19.84189 -19.69307 -18.74053 -18.37319 -17.95822 -17.55074 -16.85356 -16.62236 -16.25010 -16.20724 -15.95580 -15.61590 -15.53649 -15.21783 -14.82687 -14.56726 -14.54494 -14.31617 -13.95380 -13.61114 -13.51821 -13.48612 -12.93812 -12.82049 -12.67425 -12.58264 -12.38983 -12.30007 -12.26709 -12.12304 -12.11756 -11.66716 -11.24417 -11.06768 -10.81343 -10.57812 -10.00273 -9.70187 -9.55288 -9.48240 -8.98734 -8.43040 -6.09441 -0.44515 -0.31279 -0.16330 0.36260 0.40316 0.76430 0.87822 1.20932 1.32646 1.34359 1.42122 1.50655 1.61640 2.13953 2.74681 2.85667 2.86397 3.19963 3.29575 3.41437 3.46750 3.90924 3.94469 4.00336 4.12773 4.16950 4.19667 4.31562 4.40604 4.46503 4.53258 4.60768 4.63701 4.77421 4.90248 4.97819 5.01347 5.12359 5.18816 5.39932 5.42128 5.45484 5.57942 5.61694 5.74295 5.91428 5.95841 6.16732 6.60753 6.97772 7.16362 7.76377 8.72774 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.006572 B = 0.004282 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4259.222160 B = 6536.863522 C = 6700.139987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C -0.008 4.008 3 Si 1.005 2.995 4 H -0.246 1.246 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.164 6.164 10 C 0.153 3.847 11 C -0.257 4.257 12 C -0.033 4.033 13 C -0.201 4.201 14 C -0.017 4.017 15 C -0.185 4.185 16 C 0.191 3.809 17 N -0.248 5.248 18 N -0.313 5.313 19 C 0.134 3.866 20 S -0.002 6.002 21 N -0.260 5.260 22 N -0.297 5.297 23 C 0.229 3.771 24 C -0.050 4.050 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.093 4.093 28 C -0.115 4.115 29 C -0.086 4.086 30 H 0.265 0.735 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -13.377 4.987 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.210 4.210 3 Si 0.825 3.175 4 H -0.169 1.169 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.063 6.063 10 C 0.095 3.905 11 C -0.276 4.276 12 C -0.052 4.052 13 C -0.219 4.219 14 C -0.037 4.037 15 C -0.190 4.190 16 C -0.011 4.011 17 N -0.053 5.053 18 N -0.087 5.087 19 C -0.241 4.241 20 S 0.147 5.853 21 N -0.108 5.108 22 N -0.143 5.143 23 C -0.037 4.037 24 C -0.053 4.053 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.111 4.111 28 C -0.133 4.133 29 C -0.106 4.106 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.167 0.833 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.157 0.843 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.184 0.816 40 H 0.184 0.816 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.020 -11.917 4.178 12.984 hybrid contribution 0.957 -0.211 0.142 0.990 sum 3.977 -12.129 4.320 13.475 Atomic orbital electron populations 1.70300 1.07762 1.27962 1.45617 1.26402 0.96470 1.02318 0.95815 0.84714 0.78809 0.75851 0.78077 1.16890 1.20067 1.20082 1.21888 0.92486 0.81554 1.52972 0.87759 1.84141 1.34690 1.11816 1.75688 1.20090 0.91504 0.87650 0.91254 1.21293 0.92725 1.00708 1.12857 1.21445 1.00694 0.91387 0.91712 1.21105 0.93860 0.98380 1.08599 1.21260 0.94120 0.95665 0.92666 1.17686 0.87827 0.92681 1.20847 1.25596 0.95132 0.95172 0.85175 1.77145 0.81951 1.22792 1.23446 1.48651 1.05534 1.48331 1.06146 1.26352 0.89337 1.13076 0.95334 1.87132 1.87859 1.13923 0.96350 1.74623 1.16106 1.16171 1.03896 1.74296 1.16748 1.20559 1.02679 1.23678 0.86162 1.02763 0.91102 1.17717 0.95471 1.06241 0.85824 1.21552 0.94056 0.98968 0.98863 1.21342 1.01297 1.00041 0.91336 1.21773 0.92531 0.96009 1.00820 1.21503 0.97568 0.98944 0.95277 1.21370 0.99027 0.97596 0.92566 0.92601 0.86060 0.83326 0.82274 0.82160 0.84323 0.91319 0.87266 0.83701 0.81583 0.81563 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.03 13.67 21.61 0.30 -52.74 16 2 C -0.01 -0.45 5.49 84.83 0.47 0.02 16 3 Si 1.00 41.70 29.55 68.60 2.03 43.72 16 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.41 -22.05 9.49 67.92 0.64 -21.40 16 8 H 0.11 5.06 5.21 -2.91 -0.02 5.04 16 9 O -0.16 -8.73 7.64 -20.76 -0.16 -8.89 16 10 C 0.15 6.49 6.66 22.90 0.15 6.64 16 11 C -0.26 -9.29 9.16 22.36 0.20 -9.08 16 12 C -0.03 -0.87 10.03 22.31 0.22 -0.64 16 13 C -0.20 -4.36 10.03 22.25 0.22 -4.13 16 14 C -0.02 -0.41 9.79 22.53 0.22 -0.19 16 15 C -0.18 -6.40 5.88 -20.04 -0.12 -6.52 16 16 C 0.19 6.85 8.74 87.37 0.76 7.61 16 17 N -0.25 -11.13 8.02 -52.27 -0.42 -11.55 16 18 N -0.31 -14.07 3.49 -186.30 -0.65 -14.72 16 19 C 0.13 5.81 8.52 179.38 1.53 7.34 16 20 S 0.00 -0.06 26.25 -56.49 -1.48 -1.55 16 21 N -0.26 -11.64 12.22 -56.54 -0.69 -12.33 16 22 N -0.30 -13.16 11.97 -50.66 -0.61 -13.77 16 23 C 0.23 9.98 7.81 136.09 1.06 11.04 16 24 C -0.05 -1.89 5.87 -20.10 -0.12 -2.01 16 25 C -0.11 -4.10 9.47 22.53 0.21 -3.89 16 26 C -0.12 -3.41 10.03 22.23 0.22 -3.19 16 27 C -0.09 -2.05 10.04 22.33 0.22 -1.83 16 28 C -0.12 -2.68 10.03 22.23 0.22 -2.45 16 29 C -0.09 -2.67 9.70 22.53 0.22 -2.45 16 30 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.12 4.58 5.64 -2.91 -0.02 4.56 16 32 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.12 3.35 9.55 73.80 0.70 4.06 16 37 H 0.11 4.25 4.30 -2.91 -0.01 4.24 16 38 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.13 4.07 7.94 -2.91 -0.02 4.05 16 Total: -1.00 -77.22 378.23 6.49 -70.73 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 1.82 Total: 26.22 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 6.36 Total: -25.14 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -2.07 Total: -105.10 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.16 Total: -8.89 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.48 Total: -1.55 kcal Total: -77.22 6.49 -70.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409061506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.745 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds