Wall clock time and date at job start Tue Mar 31 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47048 * 2 1 4 4 C 1.38982 * 124.29856 * 270.00545 * 3 2 1 5 5 C 1.39068 * 131.69469 * 0.03848 * 4 3 2 6 6 C 1.38010 * 120.12501 * 179.97438 * 5 4 3 7 7 C 1.38508 * 120.62796 * 359.97438 * 6 5 4 8 8 C 1.38021 * 120.08558 * 0.02562 * 7 6 5 9 9 C 1.39088 * 119.72675 * 0.02562 * 8 7 6 10 10 C 1.48053 * 133.25552 * 180.36844 * 9 8 7 11 11 C 1.36567 * 127.48714 * 359.92090 * 10 9 8 12 12 C 1.46517 * 119.99751 * 172.13421 * 11 10 9 13 13 C 1.40248 * 120.09357 * 323.23015 * 12 11 10 14 14 C 1.37562 * 119.98083 * 179.78517 * 13 12 11 15 15 C 1.39127 * 120.17672 * 0.49655 * 14 13 12 16 16 O 1.35570 * 119.90423 * 179.71314 * 15 14 13 17 17 C 1.34739 * 117.00053 * 5.62805 * 16 15 14 18 18 H 1.08007 * 119.99628 * 354.91243 * 17 16 15 19 19 C 1.38724 * 120.00266 * 174.91885 * 17 16 15 20 20 N 1.31502 * 119.99925 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47324 * 60.00385 * 21 19 17 23 23 H 1.48509 * 109.46855 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47176 * 299.99582 * 21 19 17 25 25 C 1.39694 * 120.19413 * 359.73914 * 15 14 13 26 26 O 1.35952 * 119.99481 * 180.02562 * 25 15 14 27 27 C 1.42897 * 117.00300 * 180.02562 * 26 25 15 28 28 C 1.37991 * 120.01319 * 0.02562 * 25 15 14 29 29 C 1.34387 * 124.29100 * 90.02422 * 3 2 1 30 30 O 1.21756 * 126.02392 * 359.97438 * 29 3 2 31 31 H 1.09006 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47335 * 299.99634 * 1 2 3 33 33 H 1.09001 * 109.47619 * 59.99752 * 1 2 3 34 34 H 1.09001 * 109.47346 * 240.00727 * 2 1 3 35 35 H 1.08996 * 109.47450 * 119.99811 * 2 1 3 36 36 H 1.08003 * 119.94301 * 359.95889 * 5 4 3 37 37 H 1.07996 * 119.68996 * 180.02562 * 6 5 4 38 38 H 1.08006 * 119.95364 * 180.02562 * 7 6 5 39 39 H 1.08002 * 120.14090 * 179.97438 * 8 7 6 40 40 H 1.07997 * 119.99929 * 352.13250 * 11 10 9 41 41 H 1.07996 * 120.00942 * 0.02562 * 13 12 11 42 42 H 1.07994 * 119.90931 * 180.22929 * 14 13 12 43 43 H 0.97007 * 119.99772 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.47247 * 59.99818 * 27 26 25 45 45 H 1.09000 * 109.47483 * 179.97438 * 27 26 25 46 46 H 1.09000 * 109.46779 * 299.99924 * 27 26 25 47 47 H 1.08002 * 120.08669 * 180.02562 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2793 2.1197 -1.1482 5 6 2.1663 1.8026 -2.4975 6 6 2.4961 2.7367 -3.4585 7 6 2.9413 3.9967 -3.0944 8 6 3.0600 4.3298 -1.7602 9 6 2.7312 3.3951 -0.7841 10 6 2.7370 3.4291 0.6960 11 6 3.0976 4.4710 1.5020 12 6 2.8788 4.3879 2.9484 13 6 1.7341 3.7525 3.4512 14 6 1.5332 3.6720 4.8096 15 6 2.4580 4.2286 5.6875 16 8 2.2516 4.1511 7.0252 17 6 1.1962 3.4235 7.4402 18 1 0.5127 3.0028 6.7175 19 6 0.9876 3.2147 8.7957 20 7 1.8200 3.7266 9.6756 21 14 -0.4760 2.2065 9.3709 22 1 -0.3854 0.8358 8.8067 23 1 -0.4740 2.1328 10.8542 24 1 -1.7323 2.8497 8.9095 25 6 3.5983 4.8675 5.1947 26 8 4.4996 5.4095 6.0562 27 6 5.6422 6.0480 5.4830 28 6 3.8101 4.9486 3.8336 29 6 2.2711 2.0950 1.1103 30 8 2.1345 1.7083 2.2567 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.8201 0.8235 -2.7940 37 1 2.4053 2.4831 -4.5043 38 1 3.1960 4.7194 -3.8555 39 1 3.4075 5.3119 -1.4753 40 1 3.5440 5.3560 1.0733 41 1 1.0124 3.3232 2.7721 42 1 0.6532 3.1793 5.1956 43 1 1.6743 3.5803 10.6234 44 1 5.3173 6.8692 4.8441 45 1 6.2785 6.4366 6.2782 46 1 6.2024 5.3256 4.8893 47 1 4.6916 5.4419 3.4512 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409120674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:19 Heat of formation + Delta-G solvation = 0.088292 kcal Electronic energy + Delta-G solvation = -32054.927349 eV Core-core repulsion = 27749.273801 eV Total energy + Delta-G solvation = -4305.653548 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -41.47832 -39.60628 -38.26135 -37.61883 -36.59644 -35.70557 -34.10895 -32.52340 -31.69367 -30.69780 -29.57379 -28.93205 -28.09883 -26.54845 -25.66110 -24.89441 -23.16597 -22.19845 -21.79544 -21.33024 -20.70134 -19.10821 -18.13803 -17.71378 -17.00464 -16.67567 -16.06351 -15.80202 -15.64039 -15.30807 -15.14568 -14.65020 -14.58249 -14.41382 -14.17374 -13.95125 -13.71649 -13.60924 -13.53622 -13.41357 -13.06698 -12.84962 -12.65803 -12.40135 -12.37749 -11.95176 -11.76798 -11.57851 -11.50373 -11.34468 -11.15987 -11.10920 -10.96328 -10.69443 -10.58800 -10.46520 -10.37158 -10.01576 -9.53664 -9.49369 -8.97214 -8.51110 -7.89478 -7.75398 -6.77028 -6.58248 -4.06891 0.41583 1.22606 1.68734 2.26547 2.50571 2.77722 3.08750 3.11325 3.13168 3.45643 3.79163 3.87732 4.00565 4.36755 4.46952 4.53050 4.67561 4.82386 4.89246 4.95004 4.99756 5.06253 5.08296 5.17327 5.18213 5.37097 5.43803 5.51197 5.54558 5.56191 5.59548 5.65818 5.73766 5.80207 5.85834 5.95355 5.98522 6.09520 6.15151 6.29674 6.35764 6.39863 6.44412 6.57119 6.67672 6.80110 6.89832 7.06628 7.16750 7.18393 7.37885 7.57828 7.83915 8.15395 8.22021 8.85171 9.54796 10.57434 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.002728 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.572101 B =10262.690078 C =12344.820841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.550 5.550 4 C 0.144 3.856 5 C -0.141 4.141 6 C -0.096 4.096 7 C -0.146 4.146 8 C -0.075 4.075 9 C -0.085 4.085 10 C -0.224 4.224 11 C 0.083 3.917 12 C -0.189 4.189 13 C -0.001 4.001 14 C -0.230 4.230 15 C 0.157 3.843 16 O -0.145 6.145 17 C -0.387 4.387 18 H 0.098 0.902 19 C 0.041 3.959 20 N -0.845 5.845 21 Si 0.944 3.056 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C 0.042 3.958 26 O -0.304 6.304 27 C 0.031 3.969 28 C -0.130 4.130 29 C 0.551 3.449 30 O -0.485 6.485 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.135 0.865 43 H 0.274 0.726 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 -1.068 -23.290 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.272 5.272 4 C 0.047 3.953 5 C -0.163 4.163 6 C -0.115 4.115 7 C -0.165 4.165 8 C -0.093 4.093 9 C -0.088 4.088 10 C -0.227 4.227 11 C 0.064 3.936 12 C -0.191 4.191 13 C -0.020 4.020 14 C -0.250 4.250 15 C 0.099 3.901 16 O -0.046 6.046 17 C -0.462 4.462 18 H 0.115 0.885 19 C -0.166 4.166 20 N -0.477 5.477 21 Si 0.768 3.232 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.002 4.002 26 O -0.218 6.218 27 C -0.065 4.065 28 C -0.149 4.149 29 C 0.345 3.655 30 O -0.360 6.360 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.131 0.869 42 H 0.152 0.848 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.820 -1.345 -21.794 21.911 hybrid contribution -0.562 -0.621 -0.177 0.856 sum 1.258 -1.966 -21.971 22.094 Atomic orbital electron populations 1.22150 0.95085 1.02591 1.02903 1.21539 0.95044 0.80832 1.03723 1.45599 1.62372 1.13685 1.05513 1.18300 0.97961 0.91142 0.87892 1.20180 1.06175 1.00638 0.89270 1.20809 0.98797 0.93244 0.98640 1.20904 1.03050 0.97023 0.95508 1.20504 0.98829 0.98365 0.91647 1.19002 1.03567 0.93844 0.92412 1.20391 1.15328 0.95541 0.91476 1.22117 0.85959 0.93504 0.92019 1.18028 0.99270 1.11022 0.90752 1.20914 0.95434 0.91196 0.94430 1.20755 1.02336 1.09258 0.92602 1.18925 0.91319 0.94396 0.85410 1.83953 1.45090 1.59632 1.15885 1.21523 1.02583 1.29762 0.92320 0.88487 1.25414 0.99108 0.97437 0.94598 1.70036 1.35074 1.40206 1.02342 0.85720 0.79676 0.79705 0.78080 1.19174 1.20071 1.19204 1.17926 0.90948 1.03108 0.88240 1.86228 1.31863 1.70649 1.33085 1.22884 0.87567 0.96267 0.99742 1.20744 0.99986 1.03265 0.90910 1.18434 0.77296 0.86034 0.83755 1.90971 1.51121 1.75924 1.17990 0.91088 0.91758 0.92310 0.90118 0.89179 0.86171 0.85768 0.85812 0.85756 0.85331 0.86904 0.84773 0.91549 0.93576 0.89090 0.93602 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 37.16 0.38 -1.30 16 2 C 0.11 1.21 6.50 -4.04 -0.03 1.18 16 3 N -0.55 -7.63 2.73 -114.62 -0.31 -7.95 16 4 C 0.14 1.83 6.74 -83.60 -0.56 1.26 16 5 C -0.14 -1.40 9.79 -39.36 -0.39 -1.78 16 6 C -0.10 -0.82 10.01 -39.57 -0.40 -1.21 16 7 C -0.15 -1.27 10.04 -39.56 -0.40 -1.67 16 8 C -0.07 -0.78 10.09 -39.35 -0.40 -1.17 16 9 C -0.09 -1.11 6.30 -104.85 -0.66 -1.77 16 10 C -0.22 -3.42 6.02 -102.81 -0.62 -4.04 16 11 C 0.08 1.23 9.85 -36.85 -0.36 0.87 16 12 C -0.19 -3.49 5.46 -105.08 -0.57 -4.06 16 13 C 0.00 -0.03 6.99 -39.07 -0.27 -0.30 16 14 C -0.23 -5.29 9.14 -39.50 -0.36 -5.66 16 15 C 0.16 3.95 6.67 -38.71 -0.26 3.70 16 16 O -0.15 -4.23 9.52 -13.75 -0.13 -4.36 16 17 C -0.39 -10.84 9.48 30.91 0.29 -10.55 16 18 H 0.10 2.52 5.18 -52.48 -0.27 2.24 16 19 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 20 N -0.84 -24.57 13.67 55.48 0.76 -23.81 16 21 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C 0.04 0.95 6.70 -39.13 -0.26 0.69 16 26 O -0.30 -6.66 10.28 -34.20 -0.35 -7.01 16 27 C 0.03 0.47 9.81 101.05 0.99 1.46 16 28 C -0.13 -2.41 8.78 -38.94 -0.34 -2.75 16 29 C 0.55 9.37 7.17 -12.77 -0.09 9.28 16 30 O -0.48 -9.80 13.51 5.14 0.07 -9.73 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 35 H 0.09 1.06 7.96 -51.93 -0.41 0.65 16 36 H 0.12 0.94 7.81 -52.48 -0.41 0.53 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 2.23 6.03 -52.49 -0.32 1.91 16 42 H 0.13 3.07 5.61 -52.49 -0.29 2.77 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 47 H 0.12 1.81 6.28 -52.49 -0.33 1.48 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -34.08 396.89 -9.16 -43.24 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.75 Total: 5.13 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -4.40 Total: -16.80 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.45 Total: -31.76 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.41 Total: -21.11 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.08 -9.16 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409120674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.329 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds