Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31456 * 1 3 3 Si 1.86804 * 119.99578 * 2 1 4 4 H 1.48498 * 109.47142 * 274.99306 * 3 2 1 5 5 H 1.48504 * 109.47130 * 34.99502 * 3 2 1 6 6 H 1.48495 * 109.47086 * 154.99273 * 3 2 1 7 7 C 1.38803 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99928 * 183.63190 * 7 2 1 9 9 N 1.37071 * 120.00541 * 3.63348 * 7 2 1 10 10 C 1.36258 * 124.87345 * 329.07966 * 9 7 2 11 11 C 1.36264 * 109.70390 * 179.97438 * 10 9 7 12 12 C 1.46955 * 126.70302 * 179.97438 * 11 10 9 13 13 N 1.30044 * 119.99885 * 21.57480 * 12 11 10 14 14 N 1.40099 * 119.99815 * 9.56909 * 13 12 11 15 15 C 1.34774 * 119.99823 * 185.59992 * 14 13 12 16 16 O 1.21327 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00059 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.47216 * 179.97438 * 17 15 14 19 19 C 1.38246 * 119.97517 * 269.72600 * 18 17 15 20 20 C 1.38201 * 120.02750 * 179.72584 * 19 18 17 21 21 C 1.38464 * 119.97139 * 0.56550 * 20 19 18 22 22 F 1.35095 * 120.02156 * 179.68183 * 21 20 19 23 23 C 1.38464 * 119.94719 * 359.70843 * 21 20 19 24 24 C 1.38196 * 119.97280 * 359.97438 * 23 21 20 25 25 C 1.47580 * 106.59609 * 0.23295 * 11 10 9 26 26 C 1.39190 * 133.90747 * 179.75075 * 25 11 10 27 27 C 1.37898 * 119.67867 * 180.02562 * 26 25 11 28 28 C 1.38672 * 120.29656 * 359.97438 * 27 26 25 29 29 C 1.37932 * 120.60292 * 359.62609 * 28 27 26 30 30 C 1.38324 * 124.87870 * 149.04889 * 9 7 2 31 31 H 0.96995 * 120.00710 * 0.02562 * 1 2 3 32 32 H 1.08003 * 125.15199 * 0.02562 * 10 9 7 33 33 H 1.08007 * 119.99903 * 201.56822 * 12 11 10 34 34 H 0.96998 * 120.00276 * 5.86631 * 14 13 12 35 35 H 1.08992 * 109.47027 * 299.99405 * 17 15 14 36 36 H 1.08996 * 109.47217 * 59.99627 * 17 15 14 37 37 H 1.08003 * 119.98478 * 359.97438 * 19 18 17 38 38 H 1.07994 * 120.01305 * 180.25520 * 20 19 18 39 39 H 1.07994 * 120.00606 * 179.97438 * 23 21 20 40 40 H 1.08003 * 119.98402 * 180.02562 * 24 23 21 41 41 H 1.08004 * 120.16056 * 0.02562 * 26 25 11 42 42 H 1.08009 * 119.85529 * 180.02562 * 27 26 25 43 43 H 1.08002 * 119.70217 * 180.02562 * 28 27 26 44 44 H 1.07997 * 120.03181 * 179.89346 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.3904 2.1075 -1.3947 5 1 1.5026 2.6200 0.8030 6 1 3.5948 1.4122 0.5918 7 6 2.0086 -1.2021 0.0005 8 1 3.0870 -1.2030 0.0598 9 7 1.3254 -2.3880 -0.0742 10 6 0.0759 -2.6002 0.4261 11 6 -0.3051 -3.8853 0.1808 12 6 -1.5802 -4.5107 0.5585 13 7 -2.6213 -3.7698 0.8003 14 7 -2.5889 -2.3998 0.5093 15 6 -3.6232 -1.6112 0.8626 16 8 -4.5825 -2.0879 1.4323 17 6 -3.5887 -0.1376 0.5492 18 6 -4.8553 0.5112 1.0449 19 6 -5.9563 0.6012 0.2137 20 6 -7.1202 1.1910 0.6691 21 6 -7.1796 1.7023 1.9545 22 9 -8.3148 2.2848 2.3985 23 6 -6.0743 1.6167 2.7841 24 6 -4.9137 1.0207 2.3287 25 6 0.8154 -4.5283 -0.5327 26 6 1.0305 -5.8067 -1.0394 27 6 2.2205 -6.0992 -1.6717 28 6 3.1999 -5.1265 -1.8041 29 6 2.9961 -3.8535 -1.3137 30 6 1.8052 -3.5412 -0.6687 31 1 -0.4851 0.8399 -0.0004 32 1 -0.5225 -1.8614 0.9386 33 1 -1.6526 -5.5856 0.6353 34 1 -1.8238 -2.0194 0.0501 35 1 -2.7298 0.3185 1.0413 36 1 -3.5067 0.0027 -0.5286 37 1 -5.9081 0.2068 -0.7906 38 1 -7.9815 1.2574 0.0210 39 1 -6.1194 2.0156 3.7867 40 1 -4.0516 0.9534 2.9758 41 1 0.2690 -6.5658 -0.9379 42 1 2.3903 -7.0902 -2.0663 43 1 4.1283 -5.3660 -2.3013 44 1 3.7659 -3.1035 -1.4203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409230569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = 44.919526 kcal Electronic energy + Delta-G solvation = -31178.346579 eV Core-core repulsion = 26783.469506 eV Total energy + Delta-G solvation = -4394.877074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.128 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -48.90100 -40.55497 -39.64852 -38.34685 -36.57266 -35.88328 -33.46329 -32.56498 -31.74657 -31.14010 -30.57029 -28.99929 -28.01646 -27.14096 -25.37680 -23.06608 -22.79829 -22.02741 -21.54658 -20.95426 -20.02344 -19.06186 -17.97262 -17.67306 -16.88083 -16.44225 -16.41059 -15.64802 -15.58364 -15.43896 -15.12726 -14.75266 -14.63471 -14.45441 -14.04642 -13.93178 -13.57164 -13.54156 -13.31304 -13.26771 -13.10102 -12.93779 -12.11723 -12.07575 -12.05810 -11.80640 -11.73833 -11.58275 -11.42476 -11.34587 -10.97716 -10.97586 -10.85183 -10.59099 -10.34223 -9.59205 -9.52528 -9.44285 -9.09468 -9.03749 -8.53175 -8.13743 -7.45980 -7.22411 -6.79501 -4.75434 1.12332 1.25213 1.73728 2.13241 2.52674 2.82363 2.85646 2.88852 3.20683 3.27976 3.55490 3.68946 3.94412 4.25063 4.40727 4.43371 4.69379 4.71650 4.72654 4.87222 5.22443 5.23747 5.27173 5.46290 5.51996 5.59359 5.60633 5.68385 5.72799 5.90826 5.96613 6.00984 6.08114 6.10059 6.13123 6.21899 6.40971 6.52857 6.53786 6.64658 6.67128 6.80304 6.88355 6.89491 7.16572 7.23233 7.29925 7.58611 7.73031 7.83178 8.09746 8.18166 8.53603 8.97945 9.09536 9.90362 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.002687 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.870536 B =10419.840567 C =12538.709740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.050 3.950 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.339 4.339 8 H 0.110 0.890 9 N -0.275 5.275 10 C 0.104 3.896 11 C -0.291 4.291 12 C 0.178 3.822 13 N -0.289 5.289 14 N -0.582 5.582 15 C 0.529 3.471 16 O -0.524 6.524 17 C -0.099 4.099 18 C -0.064 4.064 19 C -0.077 4.077 20 C -0.153 4.153 21 C 0.090 3.910 22 F -0.145 7.145 23 C -0.152 4.152 24 C -0.075 4.075 25 C -0.077 4.077 26 C -0.090 4.090 27 C -0.154 4.154 28 C -0.136 4.136 29 C -0.101 4.101 30 C 0.053 3.947 31 H 0.284 0.716 32 H 0.182 0.818 33 H 0.168 0.832 34 H 0.407 0.593 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 2.144 -0.856 3.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.159 4.159 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.467 4.467 8 H 0.128 0.872 9 N 0.063 4.937 10 C -0.040 4.040 11 C -0.302 4.302 12 C -0.029 4.029 13 N -0.094 5.094 14 N -0.331 5.331 15 C 0.315 3.685 16 O -0.399 6.399 17 C -0.140 4.140 18 C -0.065 4.065 19 C -0.095 4.095 20 C -0.172 4.172 21 C 0.071 3.929 22 F -0.124 7.124 23 C -0.171 4.171 24 C -0.093 4.093 25 C -0.083 4.083 26 C -0.109 4.109 27 C -0.174 4.174 28 C -0.156 4.156 29 C -0.121 4.121 30 C -0.055 4.055 31 H 0.095 0.905 32 H 0.199 0.801 33 H 0.185 0.815 34 H 0.254 0.746 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.575 2.431 -0.091 5.182 hybrid contribution 1.471 1.192 -0.514 1.962 sum -3.104 3.623 -0.605 4.809 Atomic orbital electron populations 1.69697 1.06606 1.29524 1.43627 1.25536 0.95872 1.00765 0.93689 0.85585 0.79447 0.78901 0.79109 1.19449 1.19823 1.18761 1.19941 0.93278 0.81246 1.52215 0.87240 1.40056 1.11744 1.07399 1.34469 1.22600 0.88600 0.94765 0.98003 1.19385 0.96701 0.95079 1.19044 1.24351 0.87212 0.98745 0.92623 1.75196 1.24920 0.90322 1.18914 1.47486 1.22491 1.05458 1.57665 1.20267 0.81894 0.87427 0.78875 1.90674 1.32877 1.75719 1.40631 1.20641 0.97161 0.91977 1.04225 1.19418 0.94972 0.97885 0.94247 1.20882 0.91538 0.97013 1.00044 1.21052 0.99673 1.01618 0.94810 1.17699 0.82848 0.98520 0.93873 1.91472 1.49008 1.82135 1.89742 1.21063 0.92665 1.03046 1.00331 1.20902 0.97554 0.95883 0.95000 1.18835 0.93703 0.93410 1.02371 1.20258 0.97012 0.94594 0.98995 1.20651 0.94609 0.98739 1.03373 1.20541 0.99138 0.92835 1.03116 1.19991 0.95232 0.96617 1.00233 1.18500 0.96572 0.88180 1.02216 0.90496 0.80102 0.81495 0.74566 0.86859 0.87608 0.85081 0.84898 0.84878 0.84999 0.87085 0.87253 0.87084 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -17.96 10.78 55.49 0.60 -17.36 16 2 C 0.05 1.05 5.45 -17.50 -0.10 0.95 16 3 Si 0.95 16.50 29.55 -169.99 -5.02 11.47 16 4 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 6 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 7 C -0.34 -7.62 9.84 -15.00 -0.15 -7.77 16 8 H 0.11 2.36 7.83 -52.48 -0.41 1.95 16 9 N -0.28 -6.27 2.89 -59.48 -0.17 -6.45 16 10 C 0.10 2.30 7.81 -16.30 -0.13 2.17 16 11 C -0.29 -6.00 5.97 -103.27 -0.62 -6.61 16 12 C 0.18 3.29 11.58 -14.78 -0.17 3.12 16 13 N -0.29 -5.89 11.14 32.08 0.36 -5.54 16 14 N -0.58 -11.58 5.31 31.22 0.17 -11.42 16 15 C 0.53 10.02 7.94 -10.99 -0.09 9.93 16 16 O -0.52 -11.48 16.37 5.52 0.09 -11.39 16 17 C -0.10 -1.46 5.83 -29.04 -0.17 -1.63 16 18 C -0.06 -0.91 4.37 -104.62 -0.46 -1.37 16 19 C -0.08 -0.99 9.70 -39.59 -0.38 -1.38 16 20 C -0.15 -1.89 10.03 -39.51 -0.40 -2.28 16 21 C 0.09 1.17 7.30 -39.41 -0.29 0.89 16 22 F -0.14 -1.91 17.27 2.25 0.04 -1.87 16 23 C -0.15 -1.92 10.03 -39.51 -0.40 -2.31 16 24 C -0.08 -1.00 9.70 -39.60 -0.38 -1.39 16 25 C -0.08 -1.57 6.36 -104.90 -0.67 -2.23 16 26 C -0.09 -1.55 10.09 -39.35 -0.40 -1.95 16 27 C -0.15 -2.45 10.03 -39.55 -0.40 -2.84 16 28 C -0.14 -2.23 10.02 -39.53 -0.40 -2.62 16 29 C -0.10 -1.90 9.93 -39.42 -0.39 -2.29 16 30 C 0.05 1.15 6.73 -83.82 -0.56 0.58 16 31 H 0.28 5.38 8.31 -40.82 -0.34 5.04 16 32 H 0.18 4.03 4.52 -52.48 -0.24 3.79 16 33 H 0.17 2.47 8.06 -52.48 -0.42 2.05 16 34 H 0.41 8.16 4.76 -182.60 -0.87 7.29 16 35 H 0.11 1.60 8.09 -51.93 -0.42 1.18 16 36 H 0.11 1.39 8.08 -51.93 -0.42 0.97 16 37 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 41 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -27.52 387.45 -9.94 -37.46 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -5.30 Total: 18.28 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -6.53 Total: -19.04 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.95 Total: -40.76 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.02 Total: 11.47 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.52 -9.94 -37.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409230569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.381 kcal (2) G-P(sol) polarization free energy of solvation -27.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds