Wall clock time and date at job start Tue Mar 31 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48500 * 109.46893 * 274.99344 * 3 2 1 5 5 H 1.48497 * 109.47434 * 34.99739 * 3 2 1 6 6 H 1.48505 * 109.46902 * 155.00281 * 3 2 1 7 7 C 1.40204 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99400 * 185.09330 * 7 2 1 9 9 C 1.40756 * 120.00468 * 5.09227 * 7 2 1 10 10 O 1.21966 * 119.99919 * 354.91010 * 9 7 2 11 11 N 1.34778 * 120.00419 * 174.90511 * 9 7 2 12 12 N 1.40097 * 119.99914 * 180.02562 * 11 9 7 13 13 C 1.30642 * 119.99395 * 186.52644 * 12 11 9 14 14 C 1.46829 * 120.00193 * 25.61798 * 13 12 11 15 15 C 1.40600 * 120.01941 * 194.82569 * 14 13 12 16 16 C 1.36184 * 120.63413 * 179.97438 * 15 14 13 17 17 C 1.39575 * 120.29909 * 359.74801 * 16 15 14 18 18 C 1.40954 * 119.70563 * 0.50801 * 17 16 15 19 19 C 1.46622 * 106.01470 * 179.69694 * 18 17 16 20 20 C 1.34190 * 106.90827 * 359.77140 * 19 18 17 21 21 N 1.36870 * 109.97766 * 359.97438 * 20 19 18 22 22 C 1.46500 * 124.99694 * 179.97438 * 21 20 19 23 23 C 1.50703 * 109.47078 * 265.01939 * 22 21 20 24 24 C 1.38270 * 119.98142 * 90.00188 * 23 22 21 25 25 C 1.38228 * 120.04868 * 179.74273 * 24 23 22 26 26 C 1.38218 * 120.02296 * 0.26135 * 25 24 23 27 27 C 1.38444 * 119.97711 * 359.97438 * 26 25 24 28 28 F 1.35101 * 120.02297 * 179.97438 * 27 26 25 29 29 C 1.38174 * 119.98732 * 270.26109 * 23 22 21 30 30 C 1.39159 * 120.04620 * 359.49201 * 18 17 16 31 31 H 0.96996 * 120.00019 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99503 * 359.97438 * 11 9 7 33 33 H 1.07996 * 119.99611 * 205.61592 * 13 12 11 34 34 H 1.07997 * 119.68722 * 359.95908 * 15 14 13 35 35 H 1.08000 * 119.84903 * 180.02562 * 16 15 14 36 36 H 1.08002 * 126.54389 * 179.74649 * 19 18 17 37 37 H 1.07994 * 125.00894 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.46759 * 145.02793 * 22 21 20 39 39 H 1.08997 * 109.47216 * 25.02575 * 22 21 20 40 40 H 1.07999 * 119.97528 * 0.02562 * 24 23 22 41 41 H 1.07994 * 119.98765 * 180.27739 * 25 24 23 42 42 H 1.08000 * 120.01475 * 179.97438 * 26 25 24 43 43 H 1.07993 * 120.01901 * 359.97282 * 29 23 22 44 44 H 1.08003 * 120.32184 * 180.22902 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.3818 2.1074 -1.3948 5 1 1.4942 2.6199 0.8030 6 1 3.5864 1.4121 0.5917 7 6 2.0071 -1.2142 0.0005 8 1 3.0839 -1.2159 0.0836 9 6 1.3076 -2.4309 -0.1071 10 8 0.0879 -2.4351 -0.1073 11 7 1.9855 -3.5912 -0.2100 12 7 1.2891 -4.8021 -0.3177 13 6 1.9399 -5.9345 -0.2891 14 6 3.2390 -6.0178 0.3901 15 6 4.0809 -7.1212 0.1653 16 6 5.2886 -7.2109 0.7882 17 6 5.7096 -6.2026 1.6566 18 6 4.8740 -5.0930 1.8961 19 6 5.5971 -4.2390 2.8435 20 6 6.7610 -4.8510 3.1108 21 7 6.8424 -6.0259 2.4135 22 6 7.9743 -6.9548 2.4617 23 6 8.9115 -6.6644 1.3178 24 6 9.9445 -5.7603 1.4834 25 6 10.8082 -5.4969 0.4368 26 6 10.6367 -6.1330 -0.7783 27 6 9.5997 -7.0347 -0.9467 28 9 9.4309 -7.6566 -2.1341 29 6 8.7349 -7.2976 0.1024 30 6 3.6397 -5.0002 1.2601 31 1 -0.4850 0.8400 0.0004 32 1 2.9554 -3.5878 -0.2103 33 1 1.5223 -6.8094 -0.7649 34 1 3.7668 -7.9053 -0.5077 35 1 5.9254 -8.0639 0.6059 36 1 5.2579 -3.2970 3.2485 37 1 7.5213 -4.4722 3.7777 38 1 7.6080 -7.9783 2.3803 39 1 8.5047 -6.8326 3.4060 40 1 10.0795 -5.2631 2.4326 41 1 11.6174 -4.7940 0.5686 42 1 11.3113 -5.9268 -1.5960 43 1 7.9257 -8.0008 -0.0278 44 1 2.9974 -4.1502 1.4375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409239172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:15 Heat of formation + Delta-G solvation = 66.629842 kcal Electronic energy + Delta-G solvation = -30945.962640 eV Core-core repulsion = 26552.026996 eV Total energy + Delta-G solvation = -4393.935644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.128 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -49.24101 -41.40553 -39.47997 -38.18609 -36.84532 -34.84816 -33.96481 -32.58777 -31.31084 -31.08798 -30.80704 -29.18560 -28.74986 -26.66978 -26.14769 -23.42348 -23.26212 -22.16953 -21.94571 -20.83563 -20.23069 -19.15554 -18.02707 -17.57672 -16.96555 -16.84331 -16.66404 -16.41258 -15.92853 -15.81282 -15.50124 -15.26517 -14.51009 -14.37123 -14.09000 -13.90982 -13.76998 -13.58568 -13.43356 -13.19696 -12.90084 -12.70850 -12.56381 -12.48455 -12.38970 -12.18126 -12.03253 -11.84108 -11.46588 -11.36416 -11.13341 -10.77705 -10.64827 -10.39771 -10.32478 -9.65723 -9.48963 -9.44966 -9.15978 -8.92801 -8.22559 -7.77521 -7.64850 -6.90334 -6.34473 -4.88102 0.58961 0.73200 1.20399 1.40011 2.62915 2.72364 2.88324 3.08872 3.14676 3.18951 3.23102 3.75816 3.89722 4.06823 4.12890 4.16647 4.40641 4.50632 4.51989 4.55448 4.63815 4.69348 4.76946 4.86357 4.96808 5.07345 5.17859 5.30266 5.46163 5.53954 5.57359 5.64027 5.66071 5.79369 5.81801 5.86855 5.91970 6.07482 6.17010 6.19153 6.40351 6.54028 6.58749 6.81340 6.87166 7.04709 7.24244 7.26802 7.29318 7.92332 8.07123 8.78367 8.82822 9.38100 10.44731 10.72103 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.002492 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.671143 B =11234.868869 C =12122.601236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.089 3.911 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.555 3.445 10 O -0.555 6.555 11 N -0.588 5.588 12 N -0.196 5.196 13 C 0.025 3.975 14 C -0.101 4.101 15 C -0.077 4.077 16 C -0.134 4.134 17 C 0.100 3.900 18 C -0.103 4.103 19 C -0.188 4.188 20 C 0.040 3.960 21 N -0.481 5.481 22 C 0.153 3.847 23 C -0.085 4.085 24 C -0.111 4.111 25 C -0.091 4.091 26 C -0.148 4.148 27 C 0.100 3.900 28 F -0.137 7.137 29 C -0.133 4.133 30 C -0.075 4.075 31 H 0.273 0.727 32 H 0.376 0.624 33 H 0.166 0.834 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.137 -14.636 5.100 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.134 4.134 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.363 3.637 10 O -0.435 6.435 11 N -0.337 5.337 12 N -0.004 5.004 13 C -0.184 4.184 14 C -0.105 4.105 15 C -0.099 4.099 16 C -0.155 4.155 17 C -0.006 4.006 18 C -0.107 4.107 19 C -0.213 4.213 20 C -0.083 4.083 21 N -0.166 5.166 22 C 0.032 3.968 23 C -0.086 4.086 24 C -0.130 4.130 25 C -0.109 4.109 26 C -0.167 4.167 27 C 0.081 3.919 28 F -0.116 7.116 29 C -0.152 4.152 30 C -0.096 4.096 31 H 0.084 0.916 32 H 0.215 0.785 33 H 0.183 0.817 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 23.383 -14.147 5.007 27.784 hybrid contribution 1.887 0.361 -0.053 1.922 sum 25.270 -13.786 4.954 29.209 Atomic orbital electron populations 1.70022 1.07352 1.27924 1.31902 1.25754 0.94620 1.00613 0.92440 0.86245 0.80268 0.80723 0.78965 1.19500 1.20153 1.18570 1.19790 0.94801 0.89892 1.52866 0.91123 1.16834 0.87804 0.80642 0.78422 1.90717 1.13485 1.85245 1.54047 1.48466 1.07984 1.02084 1.75147 1.75104 1.25014 0.92863 1.07438 1.24838 0.92785 0.97076 1.03709 1.19500 0.95962 0.95637 0.99404 1.20681 0.92765 0.97756 0.98665 1.19580 0.97906 0.97944 1.00044 1.18354 0.87563 0.97480 0.97196 1.19095 0.95162 0.95522 1.00935 1.21831 0.95069 1.01422 1.03018 1.21681 0.99657 0.87127 0.99836 1.43766 1.14547 1.19374 1.38879 1.20572 0.85361 0.93848 0.97044 1.19953 0.96386 0.97306 0.94982 1.21105 0.94739 0.97360 0.99752 1.21024 0.99186 0.98682 0.92007 1.21245 0.98370 0.97623 0.99428 1.17681 0.97139 0.95440 0.81681 1.91527 1.95089 1.80898 1.44066 1.21076 0.99704 1.02199 0.92217 1.21453 0.94433 0.99092 0.94650 0.91562 0.78507 0.81745 0.85423 0.86950 0.83327 0.81769 0.88647 0.88007 0.85214 0.84697 0.84556 0.84627 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -22.13 11.73 55.56 0.65 -21.48 16 2 C 0.09 2.46 5.49 -17.33 -0.10 2.36 16 3 Si 0.91 19.70 29.56 -169.99 -5.03 14.68 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.54 -15.19 9.26 -37.89 -0.35 -15.54 16 8 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 9 C 0.55 16.52 7.65 -15.31 -0.12 16.41 16 10 O -0.56 -18.93 15.22 4.95 0.08 -18.86 16 11 N -0.59 -14.66 4.33 28.94 0.13 -14.53 16 12 N -0.20 -4.57 11.07 32.14 0.36 -4.22 16 13 C 0.02 0.44 11.17 -14.58 -0.16 0.28 16 14 C -0.10 -1.66 5.63 -104.97 -0.59 -2.25 16 15 C -0.08 -1.01 9.71 -39.43 -0.38 -1.40 16 16 C -0.13 -1.63 9.90 -39.82 -0.39 -2.02 16 17 C 0.10 1.34 6.81 -83.85 -0.57 0.77 16 18 C -0.10 -1.63 6.36 -105.14 -0.67 -2.30 16 19 C -0.19 -2.56 11.09 -37.63 -0.42 -2.98 16 20 C 0.04 0.42 11.27 -16.73 -0.19 0.23 16 21 N -0.48 -5.00 2.75 -115.57 -0.32 -5.31 16 22 C 0.15 1.04 6.10 -5.19 -0.03 1.00 16 23 C -0.09 -0.64 5.46 -104.63 -0.57 -1.22 16 24 C -0.11 -0.73 9.70 -39.57 -0.38 -1.12 16 25 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 26 C -0.15 -1.14 10.03 -39.51 -0.40 -1.54 16 27 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 28 F -0.14 -1.45 17.27 2.25 0.04 -1.42 16 29 C -0.13 -1.15 9.68 -39.51 -0.38 -1.54 16 30 C -0.07 -1.33 7.98 -38.68 -0.31 -1.64 16 31 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 32 H 0.38 8.42 6.03 -182.60 -1.10 7.32 16 33 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.11 1.04 6.92 -52.49 -0.36 0.67 16 36 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.10 0.43 8.06 -51.93 -0.42 0.01 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.14 1.07 6.92 -52.49 -0.36 0.71 16 44 H 0.14 2.93 5.67 -52.48 -0.30 2.64 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -38.02 388.13 -10.42 -48.44 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.47 Total: 9.68 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -6.70 Total: -12.83 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.81 Total: -45.54 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.08 Total: -18.86 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.02 -10.42 -48.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409239172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.070 kcal (2) G-P(sol) polarization free energy of solvation -38.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds