Wall clock time and date at job start Tue Mar 31 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30607 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48500 * 109.46893 * 274.99344 * 3 2 1 5 5 H 1.48497 * 109.47434 * 34.99739 * 3 2 1 6 6 H 1.48505 * 109.46902 * 155.00281 * 3 2 1 7 7 C 1.40204 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99400 * 185.09330 * 7 2 1 9 9 C 1.40756 * 120.00468 * 5.09227 * 7 2 1 10 10 O 1.21966 * 119.99919 * 354.91010 * 9 7 2 11 11 N 1.34778 * 120.00419 * 174.90511 * 9 7 2 12 12 N 1.40097 * 119.99914 * 180.02562 * 11 9 7 13 13 C 1.30642 * 119.99395 * 186.52644 * 12 11 9 14 14 C 1.46829 * 120.00193 * 25.61798 * 13 12 11 15 15 C 1.40600 * 120.01941 * 194.82569 * 14 13 12 16 16 C 1.36184 * 120.63413 * 179.97438 * 15 14 13 17 17 C 1.39575 * 120.29909 * 359.74801 * 16 15 14 18 18 C 1.40954 * 119.70563 * 0.50801 * 17 16 15 19 19 C 1.46622 * 106.01470 * 179.69694 * 18 17 16 20 20 C 1.34190 * 106.90827 * 359.77140 * 19 18 17 21 21 N 1.36870 * 109.97766 * 359.97438 * 20 19 18 22 22 C 1.46500 * 124.99694 * 179.97438 * 21 20 19 23 23 C 1.50703 * 109.47078 * 265.01939 * 22 21 20 24 24 C 1.38270 * 119.98142 * 90.00188 * 23 22 21 25 25 C 1.38228 * 120.04868 * 179.74273 * 24 23 22 26 26 C 1.38218 * 120.02296 * 0.26135 * 25 24 23 27 27 C 1.38444 * 119.97711 * 359.97438 * 26 25 24 28 28 F 1.35101 * 120.02297 * 179.97438 * 27 26 25 29 29 C 1.38174 * 119.98732 * 270.26109 * 23 22 21 30 30 C 1.39159 * 120.04620 * 359.49201 * 18 17 16 31 31 H 0.96996 * 120.00019 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99503 * 359.97438 * 11 9 7 33 33 H 1.07996 * 119.99611 * 205.61592 * 13 12 11 34 34 H 1.07997 * 119.68722 * 359.95908 * 15 14 13 35 35 H 1.08000 * 119.84903 * 180.02562 * 16 15 14 36 36 H 1.08002 * 126.54389 * 179.74649 * 19 18 17 37 37 H 1.07994 * 125.00894 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.46759 * 145.02793 * 22 21 20 39 39 H 1.08997 * 109.47216 * 25.02575 * 22 21 20 40 40 H 1.07999 * 119.97528 * 0.02562 * 24 23 22 41 41 H 1.07994 * 119.98765 * 180.27739 * 25 24 23 42 42 H 1.08000 * 120.01475 * 179.97438 * 26 25 24 43 43 H 1.07993 * 120.01901 * 359.97282 * 29 23 22 44 44 H 1.08003 * 120.32184 * 180.22902 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.3818 2.1074 -1.3948 5 1 1.4942 2.6199 0.8030 6 1 3.5864 1.4121 0.5917 7 6 2.0071 -1.2142 0.0005 8 1 3.0839 -1.2159 0.0836 9 6 1.3076 -2.4309 -0.1071 10 8 0.0879 -2.4351 -0.1073 11 7 1.9855 -3.5912 -0.2100 12 7 1.2891 -4.8021 -0.3177 13 6 1.9399 -5.9345 -0.2891 14 6 3.2390 -6.0178 0.3901 15 6 4.0809 -7.1212 0.1653 16 6 5.2886 -7.2109 0.7882 17 6 5.7096 -6.2026 1.6566 18 6 4.8740 -5.0930 1.8961 19 6 5.5971 -4.2390 2.8435 20 6 6.7610 -4.8510 3.1108 21 7 6.8424 -6.0259 2.4135 22 6 7.9743 -6.9548 2.4617 23 6 8.9115 -6.6644 1.3178 24 6 9.9445 -5.7603 1.4834 25 6 10.8082 -5.4969 0.4368 26 6 10.6367 -6.1330 -0.7783 27 6 9.5997 -7.0347 -0.9467 28 9 9.4309 -7.6566 -2.1341 29 6 8.7349 -7.2976 0.1024 30 6 3.6397 -5.0002 1.2601 31 1 -0.4850 0.8400 0.0004 32 1 2.9554 -3.5878 -0.2103 33 1 1.5223 -6.8094 -0.7649 34 1 3.7668 -7.9053 -0.5077 35 1 5.9254 -8.0639 0.6059 36 1 5.2579 -3.2970 3.2485 37 1 7.5213 -4.4722 3.7777 38 1 7.6080 -7.9783 2.3803 39 1 8.5047 -6.8326 3.4060 40 1 10.0795 -5.2631 2.4326 41 1 11.6174 -4.7940 0.5686 42 1 11.3113 -5.9268 -1.5960 43 1 7.9257 -8.0008 -0.0278 44 1 2.9974 -4.1502 1.4375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409239172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:04 Heat of formation + Delta-G solvation = 43.183281 kcal Electronic energy + Delta-G solvation = -30946.979359 eV Core-core repulsion = 26552.026996 eV Total energy + Delta-G solvation = -4394.952363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.128 amu Computer time = 9.03 seconds Orbital eigenvalues (eV) -49.93347 -42.34739 -40.16107 -39.77504 -38.43742 -36.42557 -34.75114 -34.67327 -32.69160 -32.15406 -31.58016 -30.26841 -29.90130 -28.57806 -27.00226 -24.69061 -23.81384 -23.12638 -22.90026 -22.41769 -21.23119 -20.71271 -19.51604 -18.63718 -17.91969 -17.80603 -17.58491 -17.38248 -17.15895 -17.00801 -16.62757 -16.07524 -15.93504 -15.51336 -15.29310 -15.05670 -14.85960 -14.63923 -14.48585 -14.34168 -14.17273 -14.07454 -13.62563 -13.41446 -13.28288 -13.23488 -13.13017 -12.94643 -12.80713 -12.70371 -12.56931 -12.28400 -12.02701 -11.90082 -11.77887 -11.12291 -10.95369 -10.68555 -10.06084 -9.97399 -9.73056 -9.59269 -8.84134 -8.43451 -8.40686 -7.09184 -0.05380 0.03197 0.18719 0.33020 1.32799 1.36946 1.47029 1.56501 1.80481 1.90339 2.16234 2.40662 2.52453 2.65646 3.01914 3.20840 3.60226 3.61491 3.64321 3.71256 3.81511 3.97128 4.03479 4.06726 4.13668 4.18856 4.36514 4.43613 4.49024 4.54469 4.62713 4.71600 4.81949 4.89664 4.98373 5.04722 5.09598 5.11719 5.15792 5.24544 5.30152 5.39460 5.45358 5.67454 5.75899 5.78142 5.83713 5.88101 6.05093 6.23990 6.42520 6.66959 6.98046 7.45362 8.41175 8.59105 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.002492 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.671143 B =11234.868869 C =12122.601236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.031 3.969 3 Si 1.008 2.992 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.246 1.246 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.542 3.458 10 O -0.618 6.618 11 N -0.591 5.591 12 N -0.280 5.280 13 C 0.080 3.920 14 C -0.131 4.131 15 C -0.072 4.072 16 C -0.124 4.124 17 C 0.102 3.898 18 C -0.136 4.136 19 C -0.238 4.238 20 C 0.077 3.923 21 N -0.472 5.472 22 C 0.149 3.851 23 C -0.092 4.092 24 C -0.108 4.108 25 C -0.094 4.094 26 C -0.156 4.156 27 C 0.069 3.931 28 F -0.153 7.153 29 C -0.144 4.144 30 C -0.097 4.097 31 H 0.282 0.718 32 H 0.382 0.618 33 H 0.209 0.791 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.214 0.786 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.078 -15.941 6.425 34.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.187 4.187 3 Si 0.825 3.175 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.169 1.169 7 C -0.600 4.600 8 H 0.105 0.895 9 C 0.351 3.649 10 O -0.504 6.504 11 N -0.339 5.339 12 N -0.086 5.086 13 C -0.129 4.129 14 C -0.135 4.135 15 C -0.093 4.093 16 C -0.144 4.144 17 C -0.006 4.006 18 C -0.140 4.140 19 C -0.263 4.263 20 C -0.048 4.048 21 N -0.154 5.154 22 C 0.029 3.971 23 C -0.093 4.093 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.175 4.175 27 C 0.050 3.950 28 F -0.132 7.132 29 C -0.163 4.163 30 C -0.119 4.119 31 H 0.092 0.908 32 H 0.223 0.777 33 H 0.225 0.775 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.230 0.770 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 28.386 -15.521 6.334 32.967 hybrid contribution 0.645 0.439 -0.351 0.855 sum 29.031 -15.082 5.983 33.258 Atomic orbital electron populations 1.70182 1.09945 1.29776 1.32874 1.27145 0.95548 1.05271 0.90770 0.84876 0.78904 0.74075 0.79630 1.18309 1.18892 1.16861 1.20284 0.95697 0.90546 1.53444 0.89534 1.17210 0.87318 0.82470 0.77856 1.90637 1.15770 1.86739 1.57295 1.47675 1.07707 1.02155 1.76324 1.75078 1.26295 0.93421 1.13786 1.25777 0.92506 0.96568 0.98026 1.19565 0.96526 0.97142 1.00280 1.20998 0.92475 0.96918 0.98860 1.20001 0.97702 0.98395 0.98339 1.18555 0.88160 0.96672 0.97193 1.19386 0.95075 0.97645 1.01923 1.21970 0.97069 1.02352 1.04897 1.22314 0.98762 0.85751 0.97961 1.44086 1.14457 1.19663 1.37220 1.20976 0.84051 0.93592 0.98483 1.20064 0.97016 0.97588 0.94662 1.21519 0.93827 0.96479 1.00853 1.21390 0.99804 0.98590 0.91379 1.21515 0.98107 0.97303 1.00549 1.18030 0.98590 0.96762 0.81665 1.91482 1.95314 1.81368 1.44995 1.21250 0.99802 1.02664 0.92622 1.21267 0.95367 0.98442 0.96798 0.90772 0.77717 0.77472 0.81803 0.83143 0.84194 0.76955 0.87185 0.84256 0.82329 0.82215 0.83661 0.84263 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -50.25 11.73 21.86 0.26 -49.99 16 2 C 0.03 1.79 5.49 85.35 0.47 2.26 16 3 Si 1.01 41.30 29.56 68.60 2.03 43.32 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.56 -33.87 9.26 23.36 0.22 -33.65 16 8 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 9 C 0.54 35.00 7.65 84.86 0.65 35.65 16 10 O -0.62 -45.80 15.22 -5.20 -0.08 -45.87 16 11 N -0.59 -32.04 4.33 -180.47 -0.78 -32.82 16 12 N -0.28 -13.98 11.07 -52.22 -0.58 -14.56 16 13 C 0.08 2.91 11.17 87.12 0.97 3.88 16 14 C -0.13 -4.33 5.63 -20.09 -0.11 -4.44 16 15 C -0.07 -1.68 9.71 22.37 0.22 -1.46 16 16 C -0.12 -2.58 9.90 22.11 0.22 -2.36 16 17 C 0.10 2.46 6.81 39.26 0.27 2.73 16 18 C -0.14 -4.33 6.36 -20.20 -0.13 -4.46 16 19 C -0.24 -6.38 11.09 23.54 0.26 -6.12 16 20 C 0.08 1.30 11.27 82.98 0.93 2.23 16 21 N -0.47 -7.78 2.75 -519.57 -1.43 -9.21 16 22 C 0.15 1.18 6.10 85.63 0.52 1.70 16 23 C -0.09 -0.99 5.46 -19.87 -0.11 -1.10 16 24 C -0.11 -0.91 9.70 22.27 0.22 -0.69 16 25 C -0.09 -0.87 10.04 22.26 0.22 -0.65 16 26 C -0.16 -2.08 10.03 22.31 0.22 -1.85 16 27 C 0.07 1.17 7.30 22.38 0.16 1.34 16 28 F -0.15 -3.15 17.27 44.97 0.78 -2.37 16 29 C -0.14 -2.09 9.68 22.31 0.22 -1.87 16 30 C -0.10 -3.67 7.98 22.86 0.18 -3.49 16 31 H 0.28 15.73 8.29 -92.71 -0.77 14.96 16 32 H 0.38 18.75 6.03 -213.33 -1.29 17.47 16 33 H 0.21 5.40 8.06 -2.91 -0.02 5.38 16 34 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.15 2.00 6.92 -2.91 -0.02 1.98 16 36 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 37 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.11 0.64 8.09 -2.38 -0.02 0.62 16 39 H 0.14 0.16 8.06 -2.39 -0.02 0.15 16 40 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 41 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.14 1.76 6.92 -2.91 -0.02 1.74 16 44 H 0.10 4.55 5.67 -2.91 -0.02 4.54 16 Total: -1.00 -95.18 388.13 5.58 -89.60 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.22 Total: 34.28 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.60 Total: -12.36 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -2.53 Total: -106.59 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -0.08 Total: -45.87 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -95.18 5.58 -89.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409239172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.779 kcal (2) G-P(sol) polarization free energy of solvation -95.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.03 seconds