Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47499 * 2 1 4 4 C 1.35955 * 117.00380 * 179.97438 * 3 2 1 5 5 C 1.38056 * 119.99285 * 0.27333 * 4 3 2 6 6 C 1.40058 * 119.82531 * 180.25152 * 5 4 3 7 7 C 1.46766 * 120.08563 * 179.77162 * 6 5 4 8 8 C 1.35815 * 120.00610 * 141.81760 * 7 6 5 9 9 S 1.77486 * 127.97412 * 171.97919 * 8 7 6 10 10 C 1.77218 * 94.57375 * 180.02562 * 9 8 7 11 11 S 1.71200 * 126.55290 * 180.02562 * 10 9 8 12 12 N 1.33789 * 106.89788 * 359.97438 * 10 9 8 13 13 C 1.46496 * 120.24305 * 180.02562 * 12 10 9 14 14 C 1.32264 * 119.51896 * 359.67750 * 12 10 9 15 15 O 1.21714 * 122.52488 * 180.35492 * 14 12 10 16 16 C 1.40123 * 119.83033 * 359.74341 * 6 5 4 17 17 C 1.37627 * 119.99272 * 0.02562 * 16 6 5 18 18 C 1.39082 * 120.16265 * 359.97438 * 17 16 6 19 19 O 1.35617 * 119.90804 * 180.02562 * 18 17 16 20 20 C 1.34764 * 116.99838 * 5.69497 * 19 18 17 21 21 H 1.07998 * 119.99913 * 354.90120 * 20 19 18 22 22 C 1.38675 * 119.99430 * 174.90073 * 20 19 18 23 23 N 1.31532 * 120.00271 * 359.72706 * 22 20 19 24 24 Si 1.86808 * 119.99624 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47353 * 59.99476 * 24 22 20 26 26 H 1.48500 * 109.46902 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46594 * 299.99679 * 24 22 20 28 28 H 1.09000 * 109.47373 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47195 * 300.00493 * 1 2 3 30 30 H 1.09004 * 109.46664 * 60.00035 * 1 2 3 31 31 H 1.08998 * 109.47436 * 239.99374 * 2 1 3 32 32 H 1.09004 * 109.46664 * 119.99965 * 2 1 3 33 33 H 1.07994 * 120.08585 * 0.02562 * 5 4 3 34 34 H 1.08001 * 119.99827 * 321.81375 * 7 6 5 35 35 H 1.09007 * 109.46987 * 359.97438 * 13 12 10 36 36 H 1.09000 * 109.47653 * 119.97578 * 13 12 10 37 37 H 1.09002 * 109.47440 * 239.97642 * 13 12 10 38 38 H 1.08002 * 120.00508 * 180.02562 * 16 6 5 39 39 H 1.07995 * 119.91807 * 179.97438 * 17 16 6 40 40 H 0.97006 * 119.99882 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.1951 0.4304 -0.0046 6 6 5.5830 0.6179 0.0013 7 6 6.4822 -0.5421 0.0009 8 6 7.6317 -0.5101 -0.7217 9 16 8.9538 -1.6943 -0.7234 10 6 9.9291 -0.8154 -1.9139 11 16 11.4571 -1.2852 -2.5267 12 7 9.2426 0.2847 -2.2431 13 6 9.7889 1.2309 -3.2189 14 6 8.0639 0.5083 -1.6862 15 8 7.3906 1.4873 -1.9502 16 6 6.1110 1.9159 0.0070 17 6 5.2661 3.0023 0.0073 18 6 3.8879 2.8157 0.0014 19 8 3.0601 3.8899 0.0012 20 6 3.6335 5.1042 -0.1123 21 1 4.7097 5.1950 -0.1149 22 6 2.8417 6.2369 -0.2258 23 7 1.5311 6.1257 -0.2281 24 14 3.6366 7.9201 -0.3839 25 1 4.4872 7.9535 -1.6005 26 1 2.5802 8.9584 -0.4891 27 1 4.4741 8.1862 0.8132 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.7837 -0.5681 -0.0096 34 1 6.2298 -1.4212 0.5752 35 1 10.7585 0.8746 -3.5671 36 1 9.1072 1.3143 -4.0653 37 1 9.9077 2.2080 -2.7506 38 1 7.1808 2.0637 0.0111 39 1 5.6743 4.0021 0.0121 40 1 0.9772 6.9181 -0.3078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409331551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = -1.548882 kcal Electronic energy + Delta-G solvation = -27405.304755 eV Core-core repulsion = 23406.110848 eV Total energy + Delta-G solvation = -3999.193908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.059 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.55915 -39.88240 -37.98336 -37.49721 -36.42994 -33.59428 -32.59555 -31.49822 -30.06650 -29.29856 -28.23334 -26.85221 -25.65246 -23.81972 -23.50347 -21.60483 -21.31197 -19.88250 -19.04455 -18.37607 -18.21609 -17.18552 -16.90621 -16.36030 -15.95258 -15.75805 -15.55453 -15.10079 -14.81633 -14.55667 -14.21653 -13.99787 -13.71729 -13.37887 -13.31515 -12.82672 -12.61490 -12.59795 -12.46889 -12.32084 -12.25364 -11.98178 -11.67175 -11.63837 -11.43249 -11.33107 -11.16386 -10.83249 -10.77192 -10.64764 -10.41286 -10.00447 -9.79746 -9.22270 -9.03810 -8.26415 -8.06793 -7.96466 -7.04181 -6.85198 -4.28886 -0.54703 0.49842 0.69100 1.35393 1.54165 2.00416 2.18617 2.30885 2.69232 2.93907 2.97248 2.98890 3.66990 3.68603 3.89510 4.23479 4.68639 4.80210 4.87289 4.90349 5.02345 5.11525 5.15626 5.19755 5.33152 5.39963 5.41338 5.43065 5.57426 5.63517 5.70740 5.96890 6.00876 6.09686 6.23971 6.29198 6.34207 6.62296 6.77120 6.90984 7.08494 7.29217 7.32626 7.56693 7.96440 8.56801 9.23944 10.28820 Molecular weight = 365.06amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.002872 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.449991 B = 9745.604075 C =12124.211370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.301 6.301 4 C 0.051 3.949 5 C -0.125 4.125 6 C -0.199 4.199 7 C 0.143 3.857 8 C -0.330 4.330 9 S 0.105 5.895 10 C 0.281 3.719 11 S -0.435 6.435 12 N -0.509 5.509 13 C 0.052 3.948 14 C 0.533 3.467 15 O -0.440 6.440 16 C 0.007 3.993 17 C -0.232 4.232 18 C 0.157 3.843 19 O -0.132 6.132 20 C -0.380 4.380 21 H 0.102 0.898 22 C 0.042 3.958 23 N -0.831 5.831 24 Si 0.948 3.052 25 H -0.265 1.265 26 H -0.273 1.273 27 H -0.265 1.265 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 -11.684 0.249 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.216 6.216 4 C 0.006 3.994 5 C -0.145 4.145 6 C -0.203 4.203 7 C 0.117 3.883 8 C -0.447 4.447 9 S 0.346 5.654 10 C -0.074 4.074 11 S -0.302 6.302 12 N -0.228 5.228 13 C -0.092 4.092 14 C 0.321 3.679 15 O -0.313 6.313 16 C -0.012 4.012 17 C -0.252 4.252 18 C 0.098 3.902 19 O -0.031 6.031 20 C -0.455 4.455 21 H 0.119 0.881 22 C -0.167 4.167 23 N -0.461 5.461 24 Si 0.771 3.229 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.189 1.189 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.155 0.845 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.778 -12.079 0.292 13.854 hybrid contribution -0.460 1.937 -0.524 2.059 sum 6.318 -10.142 -0.232 11.951 Atomic orbital electron populations 1.21736 0.93292 1.01977 1.03756 1.22628 0.95646 0.83315 1.00395 1.86233 1.18417 1.27222 1.89721 1.17867 0.82572 0.91132 1.07794 1.20685 0.92189 0.96683 1.04964 1.17883 0.91662 0.91687 1.19058 1.21913 0.86648 0.95295 0.84406 1.23443 1.05196 1.03263 1.12784 1.85788 1.10665 1.26085 1.42851 1.28362 0.98590 0.88006 0.92440 1.92913 1.01703 1.74605 1.60966 1.45282 1.18138 1.20922 1.38426 1.22506 1.02510 0.92471 0.91723 1.18069 0.80174 0.87333 0.82332 1.91033 1.52005 1.27333 1.60922 1.20823 0.98321 0.90766 0.91293 1.20734 0.91393 0.99821 1.13237 1.18918 0.89525 0.86081 0.95681 1.83960 1.33713 1.12742 1.72663 1.21669 0.93486 0.80153 1.50203 0.88054 1.25520 0.95442 1.00021 0.95729 1.70039 1.03750 1.31615 1.40733 0.85653 0.78799 0.78689 0.79759 1.18926 1.19807 1.18940 0.91035 0.91541 0.91540 0.92870 0.92796 0.85810 0.84073 0.86634 0.89365 0.89312 0.87141 0.84545 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 16 2 C 0.06 0.78 5.46 37.16 0.20 0.98 16 3 O -0.30 -6.00 9.92 -34.21 -0.34 -6.34 16 4 C 0.05 1.03 6.70 -39.13 -0.26 0.77 16 5 C -0.13 -2.03 8.78 -38.97 -0.34 -2.37 16 6 C -0.20 -3.14 5.36 -105.06 -0.56 -3.71 16 7 C 0.14 1.74 9.86 -37.00 -0.37 1.37 16 8 C -0.33 -4.20 6.32 -37.00 -0.23 -4.44 16 9 S 0.10 1.18 23.18 -107.50 -2.49 -1.32 16 10 C 0.28 3.62 7.59 53.62 0.41 4.03 16 11 S -0.44 -6.19 29.43 -107.50 -3.16 -9.36 16 12 N -0.51 -6.60 2.88 -125.04 -0.36 -6.96 16 13 C 0.05 0.55 10.14 59.84 0.61 1.16 16 14 C 0.53 7.74 6.96 -13.92 -0.10 7.65 16 15 O -0.44 -7.61 12.87 5.18 0.07 -7.54 16 16 C 0.01 0.12 6.92 -39.10 -0.27 -0.15 16 17 C -0.23 -4.75 9.14 -39.49 -0.36 -5.12 16 18 C 0.16 3.58 6.67 -38.75 -0.26 3.32 16 19 O -0.13 -3.54 9.52 -13.97 -0.13 -3.67 16 20 C -0.38 -9.78 9.48 30.89 0.29 -9.49 16 21 H 0.10 2.38 5.18 -52.49 -0.27 2.11 16 22 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 23 N -0.83 -22.47 13.67 55.48 0.76 -21.71 16 24 Si 0.95 18.72 29.55 -169.99 -5.02 13.70 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 27 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.66 7.65 -51.93 -0.40 0.27 16 32 H 0.05 0.64 7.67 -51.93 -0.40 0.25 16 33 H 0.12 1.58 6.28 -52.49 -0.33 1.25 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.16 6.39 -51.92 -0.33 0.83 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.86 6.23 -52.49 -0.33 1.53 16 39 H 0.14 2.77 5.62 -52.49 -0.29 2.47 16 40 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -30.24 369.58 -10.10 -40.33 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.02 Total: 3.74 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.96 Total: -6.45 kcal Atomic # 7 Polarization: -29.07 SS G_CDS: 0.40 Total: -28.67 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.41 Total: -17.55 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -5.66 Total: -10.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.24 -10.10 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409331551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.786 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds