Wall clock time and date at job start Tue Mar 31 2020 05:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46971 * 2 1 4 4 C 1.53002 * 109.47257 * 240.00296 * 2 1 3 5 5 O 1.45200 * 109.47466 * 119.99585 * 2 1 3 6 6 C 1.34645 * 116.99648 * 60.00473 * 5 2 1 7 7 O 1.21509 * 119.99756 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99715 * 179.97438 * 6 5 2 9 9 C 1.47020 * 125.64956 * 359.97438 * 8 6 5 10 10 C 1.54330 * 107.26918 * 178.98639 * 9 8 6 11 11 H 1.08997 * 110.72281 * 96.17116 * 10 9 8 12 12 O 1.42899 * 110.71730 * 219.44316 * 10 9 8 13 13 C 1.55152 * 102.94015 * 337.80307 * 10 9 8 14 14 H 1.09006 * 111.00104 * 153.61682 * 13 10 9 15 15 N 1.46503 * 111.00960 * 277.42819 * 13 10 9 16 16 S 1.65593 * 120.00413 * 215.00392 * 15 13 10 17 17 O 1.42106 * 104.27581 * 308.92613 * 16 15 13 18 18 O 1.42104 * 104.27905 * 181.06754 * 16 15 13 19 19 C 1.81399 * 104.45079 * 64.99825 * 16 15 13 20 20 C 1.52997 * 109.47147 * 179.97438 * 19 16 15 21 21 C 1.50706 * 109.47238 * 179.97438 * 20 19 16 22 22 H 1.07999 * 119.99515 * 0.02562 * 21 20 19 23 23 C 1.37870 * 120.00176 * 180.02562 * 21 20 19 24 24 N 1.31520 * 119.99883 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47288 * 59.99994 * 25 23 21 27 27 H 1.48503 * 109.47086 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46819 * 299.99648 * 25 23 21 29 29 C 1.47423 * 125.64527 * 180.02562 * 8 6 5 30 30 H 1.08998 * 109.47255 * 299.99584 * 1 2 3 31 31 H 1.08998 * 109.47138 * 60.00500 * 1 2 3 32 32 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47342 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46553 * 300.00326 * 3 2 1 35 35 H 1.08996 * 109.46982 * 59.99625 * 3 2 1 36 36 H 1.08994 * 109.47170 * 299.99458 * 4 2 1 37 37 H 1.08998 * 109.47280 * 59.99886 * 4 2 1 38 38 H 1.09004 * 109.46727 * 179.97438 * 4 2 1 39 39 H 1.09000 * 109.88563 * 59.56724 * 9 8 6 40 40 H 1.08998 * 109.88425 * 298.39607 * 9 8 6 41 41 H 0.96706 * 114.00259 * 293.51839 * 12 10 9 42 42 H 0.97006 * 119.99330 * 35.00206 * 15 13 10 43 43 H 1.09001 * 109.47190 * 60.00203 * 19 16 15 44 44 H 1.09004 * 109.47089 * 300.00070 * 19 16 15 45 45 H 1.09001 * 109.46832 * 60.00079 * 20 19 16 46 46 H 1.09000 * 109.47611 * 300.00376 * 20 19 16 47 47 H 0.97004 * 119.99507 * 180.02562 * 24 23 21 48 48 H 1.08998 * 110.37003 * 85.24173 * 29 8 6 49 49 H 1.09002 * 110.36797 * 322.91871 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9518 -2.5097 0.5036 8 7 2.0682 -2.6656 2.4166 9 6 2.9164 -2.1418 3.4972 10 6 3.1093 -3.2804 4.5211 11 1 4.0458 -3.8077 4.3396 12 8 3.0636 -2.7729 5.8561 13 6 1.8954 -4.2061 4.2439 14 1 2.1153 -5.2348 4.5297 15 7 0.6959 -3.7188 4.9294 16 16 -0.4035 -4.7956 5.5409 17 8 -0.6782 -5.6705 4.4553 18 8 -1.4228 -3.9773 6.0984 19 6 0.4984 -5.6692 6.8501 20 6 -0.4220 -6.7040 7.5003 21 6 0.3275 -7.4302 8.5875 22 1 1.3572 -7.1785 8.7942 23 6 -0.3013 -8.4159 9.3182 24 7 -1.5552 -8.7227 9.0661 25 14 0.6275 -9.3156 10.6663 26 1 1.0782 -8.3410 11.6920 27 1 -0.2659 -10.3200 11.2974 28 1 1.8082 -10.0006 10.0814 29 6 1.7487 -4.0751 2.7074 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4427 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6768 -1.7488 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7207 -1.2494 39 1 2.4268 -1.2930 3.9746 40 1 3.8827 -1.8372 3.0954 41 1 3.8007 -2.1883 6.0801 42 1 0.5457 -2.7652 5.0251 43 1 0.8293 -4.9538 7.6029 44 1 1.3651 -6.1720 6.4209 45 1 -0.7533 -7.4194 6.7476 46 1 -1.2885 -6.2009 7.9295 47 1 -1.9976 -9.4160 9.5804 48 1 2.4526 -4.7359 2.2013 49 1 0.7272 -4.3032 2.4031 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585114859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:02 Heat of formation + Delta-G solvation = -199.285364 kcal Electronic energy + Delta-G solvation = -32268.735928 eV Core-core repulsion = 27744.457488 eV Total energy + Delta-G solvation = -4524.278439 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.159 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -41.11399 -39.60732 -37.19148 -36.56883 -35.81254 -35.42188 -34.56497 -33.87510 -33.77111 -31.14421 -29.70183 -28.63388 -27.73362 -27.66602 -25.58830 -24.39952 -21.97088 -21.67120 -21.24087 -19.76049 -19.10772 -18.31115 -17.83430 -17.32291 -16.94043 -16.66934 -16.49791 -16.19732 -15.53658 -15.38664 -15.07476 -14.77056 -14.55967 -14.48521 -14.18334 -13.83739 -13.65835 -13.39160 -13.27495 -12.90656 -12.83718 -12.50995 -12.49974 -12.31371 -12.20781 -12.13468 -12.03950 -11.73146 -11.70680 -11.60535 -11.57717 -11.49447 -11.09841 -11.04478 -10.95072 -10.64861 -10.62853 -10.42480 -10.34962 -10.21112 -9.88510 -9.59731 -9.13962 -8.89460 -8.48689 -6.10844 -4.16388 0.79445 1.76973 2.60872 3.05705 3.27889 3.32782 3.34480 3.45174 3.72854 4.04344 4.10871 4.30503 4.39422 4.40168 4.43722 4.58155 4.60850 4.71964 4.85419 4.98580 5.04943 5.13420 5.15702 5.21923 5.24169 5.25332 5.36104 5.38397 5.44856 5.55276 5.62298 5.63128 5.67458 5.69540 5.81152 5.98114 5.99988 6.06692 6.19611 6.51890 7.04599 7.15581 7.27288 7.32081 7.38143 7.81976 8.09046 8.19159 8.86838 9.48112 11.00130 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002176 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.753559 B =12862.637520 C =13381.628707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.668 3.332 7 O -0.561 6.561 8 N -0.599 5.599 9 C 0.073 3.927 10 C 0.087 3.913 11 H 0.091 0.909 12 O -0.540 6.540 13 C 0.151 3.849 14 H 0.121 0.879 15 N -1.104 6.104 16 S 2.590 3.410 17 O -0.965 6.965 18 O -0.965 6.965 19 C -0.585 4.585 20 C 0.027 3.973 21 C -0.519 4.519 22 H 0.061 0.939 23 C 0.057 3.943 24 N -0.890 5.890 25 Si 0.901 3.099 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 C 0.107 3.893 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.382 0.618 42 H 0.416 0.584 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.265 0.735 48 H 0.088 0.912 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.140 19.225 -16.685 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.423 3.577 7 O -0.449 6.449 8 N -0.341 5.341 9 C -0.051 4.051 10 C 0.025 3.975 11 H 0.108 0.892 12 O -0.344 6.344 13 C 0.041 3.959 14 H 0.139 0.861 15 N -0.858 5.858 16 S 2.688 3.312 17 O -0.955 6.955 18 O -0.956 6.956 19 C -0.719 4.719 20 C -0.012 4.012 21 C -0.559 4.559 22 H 0.079 0.921 23 C -0.146 4.146 24 N -0.528 5.528 25 Si 0.728 3.272 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 C -0.016 4.016 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.230 0.770 42 H 0.249 0.751 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.106 0.894 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.303 18.437 -17.351 28.149 hybrid contribution 1.546 0.261 1.043 1.883 sum 13.849 18.699 -16.309 28.415 Atomic orbital electron populations 1.22528 0.93841 1.05280 1.02564 1.22095 0.94524 0.91467 0.82050 1.21854 1.02113 0.92513 1.03185 1.22515 1.01417 1.03611 0.96475 1.86299 1.71515 1.23422 1.46485 1.17462 0.78654 0.80386 0.81159 1.90933 1.40930 1.70475 1.42596 1.46891 1.53211 1.12799 1.21243 1.22820 0.95355 0.98226 0.88674 1.23119 0.98554 0.93306 0.82552 0.89153 1.86649 1.52056 1.68242 1.27451 1.21894 0.84512 0.98729 0.90809 0.86098 1.55598 1.36463 1.21441 1.72340 1.05705 0.74652 0.74362 0.76509 1.93558 1.83219 1.66938 1.51781 1.93558 1.54526 1.67078 1.80391 1.30416 1.13256 1.12436 1.15746 1.18967 0.93664 0.91866 0.96657 1.20959 0.98349 1.19278 1.17302 0.92067 1.25076 0.95017 0.96937 0.97535 1.69951 1.10774 1.31369 1.40753 0.86523 0.79550 0.79395 0.81734 1.20106 1.21125 1.20103 1.22925 1.04416 0.79587 0.94627 0.92067 0.91093 0.89271 0.91555 0.90108 0.91441 0.89320 0.91110 0.92259 0.90061 0.90649 0.77009 0.75087 0.85772 0.86479 0.94852 0.94891 0.92492 0.89412 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.37 37.15 0.31 -1.44 16 2 C 0.14 1.22 1.13 -90.62 -0.10 1.11 16 3 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 4 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 5 O -0.36 -3.93 9.49 -40.34 -0.38 -4.32 16 6 C 0.67 8.38 7.93 54.05 0.43 8.81 16 7 O -0.56 -8.38 12.14 -19.28 -0.23 -8.62 16 8 N -0.60 -6.33 3.33 -176.30 -0.59 -6.92 16 9 C 0.07 0.54 6.63 -3.06 -0.02 0.52 16 10 C 0.09 0.60 4.15 -24.90 -0.10 0.50 16 11 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 12 O -0.54 -4.01 12.84 -35.23 -0.45 -4.46 16 13 C 0.15 1.53 3.37 -65.78 -0.22 1.31 16 14 H 0.12 1.09 7.35 -51.93 -0.38 0.71 16 15 N -1.10 -14.25 5.01 -3.07 -0.02 -14.26 16 16 S 2.59 46.03 5.38 -107.50 -0.58 45.45 16 17 O -0.97 -19.55 17.82 -57.54 -1.03 -20.58 16 18 O -0.97 -20.46 18.08 -57.54 -1.04 -21.50 16 19 C -0.58 -10.98 5.93 37.16 0.22 -10.76 16 20 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 21 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 22 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 25 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.11 1.15 6.60 -2.53 -0.02 1.14 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.38 1.12 9.12 45.56 0.42 1.54 16 42 H 0.42 5.01 8.76 -34.47 -0.30 4.70 16 43 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 44 H 0.12 1.90 7.56 -51.92 -0.39 1.51 16 45 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.10 1.41 8.04 -51.93 -0.42 0.99 16 LS Contribution 411.64 15.07 6.20 6.20 Total: -1.00 -38.24 411.64 -8.95 -47.19 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.14 Total: 4.54 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 0.59 Total: -13.09 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.13 Total: -46.91 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -3.13 Total: -59.47 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 46.03 SS G_CDS: -0.58 Total: 45.45 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -38.24 -8.95 -47.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585114859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.093 kcal (2) G-P(sol) polarization free energy of solvation -38.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds