Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46549 * 2 1 4 4 C 1.50696 * 109.47248 * 240.00053 * 2 1 3 5 5 H 1.07999 * 120.00147 * 239.99633 * 4 2 1 6 6 C 1.37879 * 120.00080 * 59.99473 * 4 2 1 7 7 N 1.31518 * 119.99885 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00047 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47271 * 90.00577 * 8 6 4 10 10 H 1.48504 * 109.47493 * 210.00119 * 8 6 4 11 11 H 1.48501 * 109.47493 * 330.00357 * 8 6 4 12 12 N 1.46499 * 109.47158 * 119.99619 * 2 1 3 13 13 C 1.46502 * 119.99742 * 60.00396 * 12 2 1 14 14 S 1.65596 * 120.00228 * 240.00269 * 12 2 1 15 15 O 1.42102 * 106.40428 * 156.46440 * 14 12 2 16 16 O 1.42099 * 106.40408 * 23.53810 * 14 12 2 17 17 N 1.65605 * 107.21820 * 270.00430 * 14 12 2 18 18 C 1.47421 * 125.65120 * 82.92524 * 17 14 12 19 19 C 1.54915 * 104.83043 * 155.90773 * 18 17 14 20 20 C 1.55152 * 101.57926 * 37.01456 * 19 18 17 21 21 C 1.47030 * 125.64420 * 262.97279 * 17 14 12 22 22 H 1.08993 * 109.88184 * 300.43671 * 21 17 14 23 23 C 1.50701 * 109.88403 * 61.60487 * 21 17 14 24 24 C 1.32564 * 119.99718 * 220.79049 * 23 21 17 25 25 C 1.47805 * 120.00339 * 6.02581 * 24 23 21 26 26 C 1.39530 * 120.14282 * 223.58619 * 25 24 23 27 27 C 1.37979 * 119.85574 * 179.67595 * 26 25 24 28 28 C 1.38344 * 120.14014 * 0.62323 * 27 26 25 29 29 C 1.38346 * 120.28594 * 359.67041 * 28 27 26 30 30 C 1.37973 * 120.14160 * 0.02562 * 29 28 27 31 31 H 1.08990 * 109.47118 * 60.00146 * 1 2 3 32 32 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47023 * 299.99752 * 1 2 3 34 34 H 0.97002 * 119.99881 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46919 * 269.99682 * 13 12 2 36 36 H 1.08998 * 109.47412 * 29.99839 * 13 12 2 37 37 H 1.09005 * 109.47088 * 149.99825 * 13 12 2 38 38 H 1.08997 * 110.36322 * 37.07417 * 18 17 14 39 39 H 1.08995 * 110.37095 * 274.74535 * 18 17 14 40 40 H 1.08994 * 111.00669 * 278.93732 * 19 18 17 41 41 H 1.09003 * 110.99991 * 155.08471 * 19 18 17 42 42 H 1.09000 * 110.72669 * 82.86094 * 20 19 18 43 43 H 1.09010 * 110.71893 * 206.13381 * 20 19 18 44 44 H 1.08003 * 119.99891 * 40.79103 * 23 21 17 45 45 H 1.08002 * 119.99609 * 186.02415 * 24 23 21 46 46 H 1.08004 * 120.07351 * 359.97438 * 26 25 24 47 47 H 1.08003 * 119.92912 * 180.31920 * 27 26 25 48 48 H 1.08002 * 119.85529 * 179.69907 * 28 27 26 49 49 H 1.07997 * 119.92593 * 180.02562 * 29 28 27 50 50 H 1.07995 * 120.06678 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4872 -0.1402 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4280 14 16 2.9704 0.1143 2.2863 15 8 2.8228 -0.5645 3.5259 16 8 2.6904 1.4974 2.1193 17 7 4.5438 -0.1040 1.8180 18 6 5.2517 0.6823 0.7914 19 6 6.7522 0.5446 1.1513 20 6 6.8208 -0.9253 1.6431 21 6 5.4656 -1.1148 2.3566 22 1 5.5884 -0.9701 3.4299 23 6 4.9298 -2.4961 2.0807 24 6 5.0173 -3.4385 3.0088 25 6 5.5174 -3.1026 4.3585 26 6 6.4268 -3.9452 4.9986 27 6 6.8949 -3.6224 6.2557 28 6 6.4546 -2.4728 6.8869 29 6 5.5483 -1.6362 6.2602 30 6 5.0773 -1.9445 5.0005 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 0.7094 1.1617 -3.4844 35 1 0.7376 -2.1443 1.9994 36 1 1.5296 -2.5968 0.4709 37 1 2.4630 -2.5818 1.9864 38 1 4.9453 1.7274 0.8360 39 1 5.0602 0.2718 -0.1999 40 1 7.0282 1.2362 1.9472 41 1 7.3798 0.6923 0.2724 42 1 6.9119 -1.6103 0.8001 43 1 7.6467 -1.0600 2.3418 44 1 4.4746 -2.7181 1.1267 45 1 4.7231 -4.4519 2.7787 46 1 6.7674 -4.8457 4.5090 47 1 7.6029 -4.2712 6.7501 48 1 6.8203 -2.2271 7.8730 49 1 5.2088 -0.7401 6.7581 50 1 4.3702 -1.2904 4.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606441898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -18.741307 kcal Electronic energy + Delta-G solvation = -32959.228224 eV Core-core repulsion = 28885.920776 eV Total energy + Delta-G solvation = -4073.307447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 5.59 seconds Orbital eigenvalues (eV) -39.65870 -38.20867 -36.74388 -36.14357 -35.27022 -34.30823 -32.61458 -31.01040 -30.66837 -29.95003 -29.07565 -27.75339 -25.50295 -25.20053 -23.34765 -22.50903 -21.95188 -21.04780 -20.72896 -19.46864 -18.35737 -17.51480 -16.89577 -16.51037 -16.17058 -15.84710 -15.51186 -15.22109 -14.88844 -14.56095 -14.20574 -13.72561 -13.63151 -13.48508 -13.23988 -13.16164 -12.96916 -12.77720 -12.61966 -12.52147 -12.13555 -11.99662 -11.79439 -11.63155 -11.40212 -11.33876 -11.23363 -11.21969 -11.02889 -10.99384 -10.90877 -10.87758 -10.83160 -10.47768 -10.39443 -10.23294 -10.07014 -9.69651 -9.32023 -8.94653 -8.73850 -8.51131 -8.08595 -7.94938 -6.11932 -4.20562 1.04280 1.20744 1.43777 2.33093 3.21563 3.29526 3.30254 3.49672 3.84865 4.09990 4.32272 4.55782 4.71556 4.78478 4.89690 4.94129 4.99259 5.10761 5.18363 5.21073 5.26528 5.42850 5.48922 5.61517 5.65617 5.68944 5.76736 5.85142 5.93975 5.97340 6.00532 6.11089 6.17637 6.22052 6.27821 6.34792 6.36015 6.39285 6.53955 6.56746 6.63975 6.67742 6.74186 6.85336 6.88618 6.91555 7.06172 7.10730 7.49490 7.60459 7.76154 8.03099 8.23893 8.82530 9.45756 10.93051 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.003585 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.991612 B = 7807.935630 C = 8153.481941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.987 5.987 13 C 0.104 3.896 14 S 2.791 3.209 15 O -0.989 6.989 16 O -0.979 6.979 17 N -1.012 6.012 18 C 0.117 3.883 19 C -0.128 4.128 20 C -0.116 4.116 21 C 0.160 3.840 22 H 0.098 0.902 23 C -0.158 4.158 24 C -0.111 4.111 25 C -0.058 4.058 26 C -0.112 4.112 27 C -0.128 4.128 28 C -0.124 4.124 29 C -0.124 4.124 30 C -0.116 4.116 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.011 0.989 34 H 0.264 0.736 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.121 0.879 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.350 -6.793 11.503 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.074 0.926 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.829 5.829 13 C -0.042 4.042 14 S 2.802 3.198 15 O -0.973 6.973 16 O -0.963 6.963 17 N -0.850 5.850 18 C -0.008 4.008 19 C -0.167 4.167 20 C -0.155 4.155 21 C 0.055 3.945 22 H 0.115 0.885 23 C -0.177 4.177 24 C -0.130 4.130 25 C -0.058 4.058 26 C -0.130 4.130 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.142 4.142 30 C -0.134 4.134 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.139 0.861 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.862 -6.119 12.141 18.043 hybrid contribution 0.283 -0.866 -1.345 1.624 sum 12.145 -6.984 10.796 17.687 Atomic orbital electron populations 1.22057 0.98012 0.99651 1.00714 1.18716 0.91846 0.92646 0.80297 0.92558 1.21352 1.31855 1.13058 0.90103 0.91953 1.24919 0.94977 0.94941 0.98943 1.69884 1.36212 1.22528 1.23800 0.86555 0.79173 0.79357 0.82606 1.20709 1.21186 1.19933 1.57737 1.63988 1.21382 1.39823 1.21257 0.99099 0.82125 1.01738 1.01520 0.71699 0.73365 0.73179 1.93419 1.85477 1.76270 1.42183 1.93574 1.83531 1.32360 1.86840 1.59298 1.28742 1.44545 1.52398 1.22025 0.90898 0.96078 0.91811 1.22769 0.96286 0.96236 1.01443 1.22592 0.95306 0.97215 1.00356 1.20901 0.89308 0.84956 0.99381 0.88451 1.23857 0.98798 0.95016 1.00035 1.21621 1.00502 0.99268 0.91577 1.19133 0.97169 0.95006 0.94455 1.21223 0.97440 0.99292 0.95086 1.21009 1.00697 0.97480 0.95458 1.21190 0.98061 0.95150 0.99781 1.21164 0.97770 0.99926 0.95366 1.22200 0.99453 0.96767 0.94969 0.88911 0.94875 0.96967 0.92634 0.94019 0.90374 0.92823 0.90241 0.90418 0.90984 0.90112 0.90425 0.90665 0.85310 0.85824 0.86168 0.86386 0.86483 0.86107 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.27 6.47 2.62 -69.08 -0.18 6.29 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.08 7.99 -34.44 -0.28 -13.35 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.12 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.96 11.32 55.43 0.63 -23.33 16 8 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 N -0.99 -20.41 3.12 -115.85 -0.36 -20.77 16 13 C 0.10 1.87 9.28 59.85 0.56 2.42 16 14 S 2.79 55.60 6.01 -107.50 -0.65 54.95 16 15 O -0.99 -19.54 13.78 -57.17 -0.79 -20.32 16 16 O -0.98 -22.79 16.15 -57.17 -0.92 -23.71 16 17 N -1.01 -16.85 3.45 -105.64 -0.36 -17.21 16 18 C 0.12 1.81 7.15 -2.53 -0.02 1.79 16 19 C -0.13 -1.49 7.09 -24.58 -0.17 -1.67 16 20 C -0.12 -1.34 6.47 -24.90 -0.16 -1.50 16 21 C 0.16 2.26 2.43 -68.10 -0.17 2.10 16 22 H 0.10 1.41 3.78 -51.93 -0.20 1.21 16 23 C -0.16 -2.15 6.92 -36.22 -0.25 -2.40 16 24 C -0.11 -1.39 9.76 -37.58 -0.37 -1.76 16 25 C -0.06 -0.75 5.25 -105.02 -0.55 -1.30 16 26 C -0.11 -1.24 9.79 -39.19 -0.38 -1.62 16 27 C -0.13 -1.31 10.03 -39.64 -0.40 -1.71 16 28 C -0.12 -1.32 10.04 -39.50 -0.40 -1.72 16 29 C -0.12 -1.55 10.03 -39.64 -0.40 -1.95 16 30 C -0.12 -1.67 7.29 -39.19 -0.29 -1.95 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 32 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 33 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.41 7.02 -51.93 -0.36 1.04 16 37 H 0.05 0.85 5.66 -51.93 -0.29 0.56 16 38 H 0.08 1.28 7.83 -51.93 -0.41 0.87 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 43 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.13 1.81 7.77 -52.48 -0.41 1.40 16 45 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 46 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 49 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 50 H 0.16 2.61 3.47 -52.49 -0.18 2.43 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -29.94 399.87 -12.16 -42.10 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.50 Total: 7.22 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -3.21 Total: -19.88 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.10 Total: -61.32 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.71 Total: -44.03 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.65 Total: 54.95 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.94 -12.16 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606441898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.363 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.59 seconds