Wall clock time and date at job start Tue Mar 31 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 C 1.50700 * 109.46860 * 240.00741 * 2 1 3 5 5 H 1.08006 * 119.99655 * 239.99797 * 4 2 1 6 6 C 1.37874 * 120.00345 * 60.00036 * 4 2 1 7 7 N 1.31509 * 120.00113 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99996 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47294 * 59.99747 * 8 6 4 10 10 H 1.48505 * 109.46757 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47171 * 299.99483 * 8 6 4 12 12 N 1.46493 * 109.47419 * 120.00748 * 2 1 3 13 13 C 1.46500 * 120.00558 * 59.99979 * 12 2 1 14 14 S 1.65609 * 119.99833 * 240.00109 * 12 2 1 15 15 O 1.42100 * 106.40333 * 156.45567 * 14 12 2 16 16 O 1.42100 * 106.39890 * 23.53746 * 14 12 2 17 17 N 1.65595 * 107.21611 * 269.99702 * 14 12 2 18 18 C 1.47017 * 125.65119 * 269.95514 * 17 14 12 19 19 C 1.54324 * 107.27773 * 178.97756 * 18 17 14 20 20 C 1.55166 * 102.93662 * 337.81197 * 19 18 17 21 21 C 1.47426 * 125.64980 * 90.00060 * 17 14 12 22 22 H 1.09008 * 110.45928 * 85.20217 * 21 17 14 23 23 C 1.50707 * 110.36599 * 322.93409 * 21 17 14 24 24 C 1.32562 * 120.00072 * 124.76064 * 23 21 17 25 25 C 1.47811 * 120.00391 * 7.50222 * 24 23 21 26 26 C 1.39534 * 120.14202 * 217.78309 * 25 24 23 27 27 C 1.37972 * 119.85288 * 180.27521 * 26 25 24 28 28 C 1.38341 * 120.14325 * 359.49408 * 27 26 25 29 29 C 1.38348 * 120.28569 * 0.50658 * 28 27 26 30 30 C 1.37968 * 120.14043 * 359.74668 * 29 28 27 31 31 H 1.08998 * 109.47133 * 299.99513 * 1 2 3 32 32 H 1.09002 * 109.47792 * 59.99462 * 1 2 3 33 33 H 1.09006 * 109.47197 * 179.97438 * 1 2 3 34 34 H 0.97002 * 120.00467 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46596 * 270.00230 * 13 12 2 36 36 H 1.08997 * 109.46593 * 29.99775 * 13 12 2 37 37 H 1.08994 * 109.47227 * 150.00290 * 13 12 2 38 38 H 1.09000 * 109.88187 * 59.56029 * 18 17 14 39 39 H 1.09002 * 110.01359 * 298.46892 * 18 17 14 40 40 H 1.08989 * 110.72507 * 219.45023 * 19 18 17 41 41 H 1.09005 * 110.71786 * 96.16683 * 19 18 17 42 42 H 1.08997 * 110.99788 * 277.42175 * 20 19 18 43 43 H 1.08996 * 111.00236 * 153.57564 * 20 19 18 44 44 H 1.08003 * 119.99352 * 304.75138 * 23 21 17 45 45 H 1.08003 * 119.99717 * 187.51068 * 24 23 21 46 46 H 1.08002 * 120.07174 * 0.02562 * 26 25 24 47 47 H 1.08002 * 119.92568 * 179.74080 * 27 26 25 48 48 H 1.08003 * 119.85608 * 180.27344 * 28 27 26 49 49 H 1.08004 * 119.92746 * 179.72153 * 29 28 27 50 50 H 1.07995 * 120.07258 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.8257 -2.5199 -4.0080 10 1 1.8258 -0.4201 -5.2205 11 1 3.8061 -1.1206 -4.0084 12 7 2.0183 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4278 14 16 2.9704 0.1140 2.2862 15 8 2.8228 -0.5648 3.5258 16 8 2.6903 1.4971 2.1193 17 7 4.5437 -0.1043 1.8179 18 6 5.4214 -1.2023 2.2485 19 6 6.7787 -1.0089 1.5400 20 6 6.4087 -0.1335 0.3134 21 6 5.2966 0.7707 0.9008 22 1 5.7355 1.6064 1.4459 23 6 4.3974 1.2768 -0.1976 24 6 4.2784 2.5800 -0.4092 25 6 5.1486 3.5291 0.3167 26 6 4.6384 4.7506 0.7579 27 6 5.4575 5.6345 1.4298 28 6 6.7790 5.3075 1.6755 29 6 7.2909 4.0980 1.2407 30 6 6.4838 3.2075 0.5632 31 1 -0.3633 0.5137 0.8900 32 1 -0.3635 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 0.7080 1.1612 -3.4843 35 1 0.7377 -2.1445 1.9991 36 1 1.5296 -2.5969 0.4706 37 1 2.4630 -2.5820 1.9861 38 1 4.9862 -2.1593 1.9608 39 1 5.5592 -1.1678 3.3292 40 1 7.1871 -1.9675 1.2205 41 1 7.4814 -0.4861 2.1889 42 1 6.0242 -0.7462 -0.5019 43 1 7.2621 0.4598 -0.0147 44 1 3.8500 0.5777 -0.8125 45 1 3.5455 2.9483 -1.1118 46 1 3.6058 5.0053 0.5702 47 1 5.0650 6.5821 1.7682 48 1 7.4149 6.0010 2.2058 49 1 8.3247 3.8505 1.4318 50 1 6.8846 2.2639 0.2239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606441900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:57 Heat of formation + Delta-G solvation = -18.076093 kcal Electronic energy + Delta-G solvation = -33528.735438 eV Core-core repulsion = 29455.456837 eV Total energy + Delta-G solvation = -4073.278601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -39.48719 -38.07050 -36.66437 -36.15174 -35.14213 -33.98766 -32.65108 -30.92443 -30.61026 -29.69231 -29.07266 -27.60380 -25.50461 -25.24927 -23.08732 -22.26427 -21.75755 -21.11708 -20.69327 -19.29601 -18.16894 -17.37877 -16.73828 -16.43065 -15.99523 -15.86076 -15.29014 -15.01378 -14.63911 -14.55056 -14.02899 -13.74736 -13.55093 -13.29448 -13.27446 -13.05340 -12.87642 -12.74040 -12.32376 -12.31654 -12.07855 -11.87761 -11.73224 -11.48426 -11.35693 -11.28841 -11.21186 -11.17144 -11.02229 -10.96657 -10.91349 -10.70792 -10.63303 -10.47366 -10.28754 -10.20230 -10.10534 -9.41408 -9.27165 -8.81625 -8.55216 -8.42287 -7.95096 -7.81366 -6.15960 -4.24275 1.23003 1.36540 1.61183 2.80395 3.20118 3.26963 3.28293 3.60697 4.07644 4.24989 4.29405 4.60857 4.80788 5.00662 5.08609 5.10411 5.12670 5.17229 5.18753 5.28990 5.41944 5.56291 5.60928 5.66065 5.70162 5.76160 5.85078 5.90671 5.98999 6.05418 6.16879 6.18295 6.20439 6.30045 6.35477 6.46014 6.55078 6.61553 6.65029 6.69162 6.75406 6.86094 6.89897 6.93499 7.12472 7.17392 7.36096 7.39652 7.51710 7.60117 7.76354 8.01972 8.22551 8.79452 9.41000 10.87829 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.008752 B = 0.005040 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.573618 B = 5553.727930 C = 6481.923615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.790 3.210 15 O -1.000 7.000 16 O -0.967 6.967 17 N -1.011 6.011 18 C 0.123 3.877 19 C -0.127 4.127 20 C -0.126 4.126 21 C 0.170 3.830 22 H 0.089 0.911 23 C -0.175 4.175 24 C -0.097 4.097 25 C -0.040 4.040 26 C -0.103 4.103 27 C -0.123 4.123 28 C -0.132 4.132 29 C -0.126 4.126 30 C -0.123 4.123 31 H 0.011 0.989 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.166 0.834 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.657 1.211 5.268 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.084 0.916 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.801 3.199 15 O -0.985 6.985 16 O -0.951 6.951 17 N -0.849 5.849 18 C -0.003 4.003 19 C -0.166 4.166 20 C -0.164 4.164 21 C 0.066 3.934 22 H 0.106 0.894 23 C -0.193 4.193 24 C -0.116 4.116 25 C -0.040 4.040 26 C -0.121 4.121 27 C -0.141 4.141 28 C -0.150 4.150 29 C -0.144 4.144 30 C -0.141 4.141 31 H 0.030 0.970 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.184 0.816 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.136 0.864 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.176 1.834 5.952 12.794 hybrid contribution 0.229 -0.791 -1.216 1.469 sum 11.405 1.042 4.736 12.393 Atomic orbital electron populations 1.22072 0.98275 0.99576 1.00649 1.18827 0.91648 0.93160 0.80154 0.91603 1.21313 1.31901 1.13167 0.90113 0.91946 1.24894 0.94865 0.94904 0.98764 1.69866 1.35631 1.22359 1.23969 0.86692 0.79275 0.79850 0.82416 1.20311 1.21248 1.20118 1.57818 1.64189 1.21267 1.39975 1.21161 0.98800 0.82252 1.01697 1.01595 0.71753 0.73569 0.72956 1.93521 1.85945 1.76659 1.42339 1.93593 1.83333 1.31594 1.86603 1.59349 1.29154 1.36209 1.60177 1.21587 0.90483 0.89694 0.98547 1.22602 0.96293 1.00560 0.97105 1.22856 0.97576 0.97977 0.98018 1.21123 0.90967 0.92378 0.88975 0.89407 1.24355 0.99441 0.97672 0.97853 1.21678 0.97809 0.92620 0.99519 1.19307 0.93450 0.94336 0.96866 1.21339 0.99795 0.93312 0.97654 1.21059 0.94057 0.99457 0.99510 1.21090 0.95716 0.97132 1.01027 1.21002 0.99407 0.94457 0.99533 1.21540 0.93464 0.99428 0.99687 0.97036 0.88953 0.95003 0.92507 0.94036 0.90241 0.93474 0.92062 0.91788 0.90391 0.90985 0.89753 0.90488 0.81649 0.85248 0.85708 0.86385 0.86665 0.86433 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.16 1.83 -69.09 -0.13 6.03 16 3 H 0.07 1.67 5.49 -51.93 -0.28 1.39 16 4 C -0.53 -12.46 5.75 -34.44 -0.20 -12.66 16 5 H 0.06 1.46 7.33 -52.48 -0.38 1.07 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -22.55 11.32 55.43 0.63 -21.92 16 8 Si 0.89 19.31 29.54 -169.99 -5.02 14.29 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 N -0.99 -20.60 3.12 -115.87 -0.36 -20.96 16 13 C 0.11 1.95 9.29 59.85 0.56 2.50 16 14 S 2.79 57.77 5.73 -107.50 -0.62 57.15 16 15 O -1.00 -21.88 16.79 -57.17 -0.96 -22.84 16 16 O -0.97 -22.45 15.25 -57.17 -0.87 -23.32 16 17 N -1.01 -17.51 3.63 -105.66 -0.38 -17.89 16 18 C 0.12 1.71 6.99 -3.07 -0.02 1.68 16 19 C -0.13 -1.39 6.95 -24.89 -0.17 -1.56 16 20 C -0.13 -1.60 6.18 -24.58 -0.15 -1.75 16 21 C 0.17 2.76 2.33 -67.57 -0.16 2.60 16 22 H 0.09 1.42 4.52 -51.92 -0.23 1.19 16 23 C -0.17 -3.26 5.75 -36.21 -0.21 -3.47 16 24 C -0.10 -1.79 9.71 -37.58 -0.36 -2.16 16 25 C -0.04 -0.65 5.23 -105.02 -0.55 -1.20 16 26 C -0.10 -1.62 9.79 -39.20 -0.38 -2.00 16 27 C -0.12 -1.64 10.03 -39.64 -0.40 -2.04 16 28 C -0.13 -1.61 10.04 -39.50 -0.40 -2.01 16 29 C -0.13 -1.57 10.03 -39.64 -0.40 -1.96 16 30 C -0.12 -1.75 7.25 -39.20 -0.28 -2.04 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 33 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 34 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 37 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.71 8.14 -51.94 -0.42 0.29 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 43 H 0.08 0.82 6.71 -51.93 -0.35 0.47 16 44 H 0.17 3.49 4.79 -52.48 -0.25 3.24 16 45 H 0.13 2.49 8.06 -52.48 -0.42 2.07 16 46 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 47 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 49 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 50 H 0.13 1.64 4.66 -52.49 -0.24 1.39 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -29.29 395.66 -12.07 -41.37 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.44 Total: 9.68 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -3.02 Total: -21.51 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.12 Total: -60.77 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.83 Total: -46.15 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 57.77 SS G_CDS: -0.62 Total: 57.15 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.29 -12.07 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606441900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.291 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds