Wall clock time and date at job start Tue Mar 31 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 S 1.65605 * 120.00185 * 265.00191 * 12 2 1 14 14 O 1.42098 * 104.28016 * 181.06870 * 13 12 2 15 15 O 1.42103 * 104.27224 * 308.92479 * 13 12 2 16 16 C 1.81397 * 104.44685 * 64.99713 * 13 12 2 17 17 C 1.50710 * 109.46988 * 180.02562 * 16 13 12 18 18 C 1.38252 * 119.97480 * 269.72514 * 17 16 13 19 19 C 1.38183 * 120.02937 * 179.76798 * 18 17 16 20 20 C 1.38488 * 119.99431 * 0.52291 * 19 18 17 21 21 F 1.35108 * 120.01922 * 179.74779 * 20 19 18 22 22 C 1.38415 * 119.96080 * 359.72963 * 20 19 18 23 23 C 1.38308 * 119.98062 * 89.99501 * 17 16 13 24 24 Br 1.89102 * 119.99884 * 359.97438 * 23 17 16 25 25 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 27 27 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 0.97007 * 120.00147 * 85.00020 * 12 2 1 30 30 H 1.08998 * 109.47230 * 299.99818 * 16 13 12 31 31 H 1.08994 * 109.47444 * 60.00284 * 16 13 12 32 32 H 1.07999 * 119.98708 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.99891 * 180.23416 * 19 18 17 34 34 H 1.08006 * 120.02088 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 16 2.4122 0.1771 2.5505 14 8 2.8606 -0.8029 3.4765 15 8 3.2875 1.1906 2.0750 16 6 0.8407 0.8988 3.0984 17 6 1.0718 1.7224 4.3393 18 6 0.9657 1.1363 5.5869 19 6 1.1819 1.8892 6.7253 20 6 1.4945 3.2340 6.6168 21 9 1.7011 3.9718 7.7297 22 6 1.5956 3.8217 5.3677 23 6 1.3843 3.0652 4.2293 24 35 1.5223 3.8671 2.5223 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7011 1.1560 -3.4844 29 1 2.1110 -1.6562 1.1948 30 1 0.4387 1.5352 2.3101 31 1 0.1316 0.1009 3.3184 32 1 0.7169 0.0888 5.6719 33 1 1.1026 1.4300 7.6995 34 1 1.8397 4.8703 5.2820 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863983487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:45 Heat of formation + Delta-G solvation = -90.198510 kcal Electronic energy + Delta-G solvation = -22675.130575 eV Core-core repulsion = 18889.018819 eV Total energy + Delta-G solvation = -3786.111756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.22131 -39.59284 -36.63487 -35.57483 -35.37451 -33.21415 -32.47059 -32.22190 -29.72837 -28.36983 -27.18882 -25.25754 -23.26507 -22.05732 -20.97949 -18.86317 -17.85372 -17.59293 -17.00631 -16.57019 -16.23713 -15.91494 -15.41474 -15.34194 -14.75677 -14.34276 -14.04265 -13.84471 -13.65276 -13.18313 -12.84608 -12.52141 -12.42020 -12.21602 -11.79792 -11.63199 -11.49383 -11.40461 -11.17094 -11.01669 -10.97894 -10.78794 -10.65273 -10.40164 -10.19108 -10.11062 -9.27707 -9.20731 -8.83583 -8.61073 -8.31546 -6.15695 -4.22383 0.35244 0.68218 0.97188 1.42398 3.06201 3.26670 3.30600 3.31397 3.37868 3.86101 4.05632 4.24376 4.34158 4.43613 4.49270 4.62502 4.90948 5.06138 5.16902 5.25648 5.40146 5.54652 5.70202 5.73333 5.89003 6.25732 6.37032 6.65875 6.70521 6.91445 7.50993 7.60705 7.82727 7.95999 8.22330 8.79769 9.43496 10.90550 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.003776 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.447818 B = 7414.047477 C = 8307.054690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.264 3.736 3 H 0.054 0.946 4 C -0.520 4.520 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -1.098 6.098 13 S 2.604 3.396 14 O -0.975 6.975 15 O -0.935 6.935 16 C -0.612 4.612 17 C -0.063 4.063 18 C -0.074 4.074 19 C -0.137 4.137 20 C 0.107 3.893 21 F -0.133 7.133 22 C -0.125 4.125 23 C -0.062 4.062 24 Br -0.002 7.002 25 H 0.011 0.989 26 H 0.097 0.903 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 5.115 15.869 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.560 4.560 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.859 5.859 13 S 2.693 3.307 14 O -0.965 6.965 15 O -0.925 6.925 16 C -0.736 4.736 17 C -0.067 4.067 18 C -0.093 4.093 19 C -0.156 4.156 20 C 0.086 3.914 21 F -0.111 7.111 22 C -0.145 4.145 23 C -0.143 4.143 24 Br 0.084 6.916 25 H 0.030 0.970 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.242 0.758 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.728 5.876 15.470 16.771 hybrid contribution -0.571 -0.761 -0.384 1.026 sum -3.299 5.115 15.086 16.267 Atomic orbital electron populations 1.22416 0.98773 1.00228 1.00994 1.18668 0.90535 0.93442 0.81407 0.92785 1.21160 1.31846 1.13235 0.89736 0.91763 1.24902 0.94844 0.95027 0.99059 1.69839 1.36185 1.22618 1.24062 0.86505 0.79350 0.79580 0.81680 1.20178 1.21175 1.20072 1.55610 1.83773 1.19156 1.27324 1.05158 0.76456 0.75066 0.73998 1.93532 1.79350 1.58805 1.64836 1.93631 1.59186 1.60850 1.78842 1.30215 1.27116 1.11752 1.04513 1.19031 1.01289 0.92212 0.94175 1.21064 0.97313 1.00894 0.90043 1.21269 1.01519 0.92226 1.00609 1.17574 1.01762 0.89767 0.82303 1.91532 1.92392 1.76762 1.50421 1.21071 1.02264 1.01504 0.89704 1.21788 1.04340 0.94624 0.93518 1.96945 1.96492 1.80874 1.17257 0.96987 0.88489 0.94416 0.92516 0.75757 0.82755 0.83483 0.83160 0.83495 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.25 37.16 0.34 -3.13 16 2 C 0.26 6.07 2.80 -69.09 -0.19 5.88 16 3 H 0.05 1.36 7.48 -51.93 -0.39 0.97 16 4 C -0.52 -13.42 8.76 -34.44 -0.30 -13.72 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.74 11.31 55.43 0.63 -23.11 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -1.10 -21.38 5.35 -5.88 -0.03 -21.42 16 13 S 2.60 47.07 5.42 -107.50 -0.58 46.48 16 14 O -0.98 -18.59 18.08 -57.54 -1.04 -19.63 16 15 O -0.94 -19.80 16.69 -57.54 -0.96 -20.76 16 16 C -0.61 -8.71 4.89 36.01 0.18 -8.54 16 17 C -0.06 -0.85 5.14 -104.59 -0.54 -1.39 16 18 C -0.07 -0.81 9.70 -39.60 -0.38 -1.19 16 19 C -0.14 -1.35 10.03 -39.51 -0.40 -1.75 16 20 C 0.11 1.17 7.30 -39.42 -0.29 0.88 16 21 F -0.13 -1.43 17.27 2.25 0.04 -1.39 16 22 C -0.12 -1.46 9.77 -39.49 -0.39 -1.84 16 23 C -0.06 -0.84 6.22 -39.53 -0.25 -1.09 16 24 Br 0.00 -0.04 31.09 -68.01 -2.11 -2.15 16 25 H 0.01 0.20 5.78 -51.93 -0.30 -0.10 16 26 H 0.10 2.30 6.06 -51.93 -0.31 1.98 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.41 7.32 8.79 -34.47 -0.30 7.02 16 30 H 0.15 2.29 5.27 -51.93 -0.27 2.02 16 31 H 0.15 1.62 8.08 -51.93 -0.42 1.20 16 32 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -30.29 325.12 -9.73 -40.02 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -3.24 Total: 5.96 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -2.31 Total: -24.30 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.60 Total: -44.53 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -2.00 Total: -40.38 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 47.07 SS G_CDS: -0.58 Total: 46.48 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.11 Total: -2.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.29 -9.73 -40.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863983487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.177 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds