Wall clock time and date at job start Tue Mar 31 2020 07:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21578 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.47664 * 120.00041 * 179.97438 * 14 13 3 17 17 N 1.30619 * 122.10891 * 0.02562 * 16 14 13 18 18 S 1.56148 * 109.81200 * 180.02562 * 17 16 14 19 19 C 1.71755 * 97.28156 * 359.97438 * 18 17 16 20 20 C 1.35059 * 105.45184 * 359.74075 * 19 18 17 21 21 I 2.09500 * 124.16372 * 180.25162 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 28 28 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 29 29 H 1.08003 * 127.27618 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4320 16 6 0.0446 3.3251 -2.6284 17 7 0.8458 3.3838 -3.6583 18 16 0.1466 4.1428 -4.8302 19 6 -1.3368 4.4649 -4.0266 20 6 -1.2057 3.9206 -2.7975 21 53 -2.6942 3.9704 -1.3240 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8293 -0.0605 2.9501 28 1 2.2718 2.1232 -1.9978 29 1 -2.1947 4.9885 -4.4220 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864057623.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:25 Heat of formation + Delta-G solvation = 24.100662 kcal Electronic energy + Delta-G solvation = -16722.975374 eV Core-core repulsion = 13825.570835 eV Total energy + Delta-G solvation = -2897.404540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 365.964 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -40.28984 -38.02308 -35.09938 -32.97639 -32.03871 -30.82240 -28.67306 -27.30163 -25.79217 -23.05593 -21.33786 -19.78128 -19.38490 -18.24110 -17.57522 -15.99957 -15.43334 -15.23054 -14.41381 -14.11577 -13.97640 -13.18565 -12.75487 -12.66556 -12.00080 -11.51224 -11.47410 -11.25219 -11.14428 -10.95268 -10.83716 -10.77330 -10.35482 -10.20288 -10.00290 -9.58689 -9.48945 -9.05438 -8.78731 -8.66043 -8.48247 -7.82835 -6.11739 -4.20705 0.48022 0.71880 1.60156 1.67371 1.96002 3.25599 3.32245 3.34542 3.77190 3.89742 4.35918 4.61731 5.09712 5.19888 5.31352 5.54287 6.14733 6.41482 6.48359 6.67404 7.06236 7.20488 7.35100 7.41344 7.62750 7.73393 7.89816 8.17413 8.62235 8.74979 9.03719 9.45923 10.93593 Molecular weight = 365.96amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.004169 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.584975 B = 6714.190872 C = 7818.984893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.562 3.438 15 O -0.510 6.510 16 C 0.085 3.915 17 N -0.511 5.511 18 S 0.466 5.534 19 C -0.250 4.250 20 C -0.136 4.136 21 I 0.049 6.951 22 H 0.052 0.948 23 H 0.022 0.978 24 H 0.037 0.963 25 H 0.101 0.899 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.396 0.604 29 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 9.172 -13.469 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.329 5.329 14 C 0.340 3.660 15 O -0.386 6.386 16 C -0.093 4.093 17 N -0.344 5.344 18 S 0.620 5.380 19 C -0.402 4.402 20 C -0.290 4.290 21 I 0.192 6.808 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.119 0.881 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.229 0.771 29 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.418 8.947 -13.069 20.757 hybrid contribution 1.008 -0.101 0.243 1.042 sum -12.409 8.845 -12.826 19.918 Atomic orbital electron populations 1.21834 0.98156 0.98120 1.01286 1.21937 0.92749 0.99564 1.02353 1.18895 0.94393 0.89282 0.80508 0.92865 1.21220 0.90617 1.39085 1.06351 0.92080 1.24861 0.98598 0.94750 0.95351 1.69891 1.35103 1.37587 1.09283 0.86455 0.84875 0.77636 0.78194 1.20562 1.21048 1.19862 1.46441 1.13734 1.53892 1.18874 1.17205 0.83957 0.80086 0.84774 1.90899 1.50538 1.59457 1.37742 1.21375 0.90350 1.01701 0.95854 1.72423 1.33232 1.22571 1.06200 1.80489 0.98402 1.40864 1.18206 1.27122 1.08052 1.06451 0.98606 1.24613 0.99421 1.05521 0.99477 1.96666 1.35923 1.98395 1.49845 0.92856 0.95854 0.94418 0.88119 0.95073 0.92553 0.77101 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 15 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 15 3 C 0.27 6.84 2.24 -69.08 -0.15 6.68 15 4 H 0.05 1.53 7.58 -51.93 -0.39 1.14 15 5 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 15 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 15 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 15 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 13 N -0.68 -14.92 5.02 -55.93 -0.28 -15.20 15 14 C 0.56 11.55 6.38 -12.41 -0.08 11.47 15 15 O -0.51 -11.18 11.02 5.30 0.06 -11.12 15 16 C 0.08 1.44 6.67 -84.06 -0.56 0.88 15 17 N -0.51 -7.82 10.71 24.89 0.27 -7.55 15 18 S 0.47 4.79 23.20 -107.50 -2.49 2.30 15 19 C -0.25 -2.64 11.29 29.60 0.33 -2.30 15 20 C -0.14 -1.97 6.31 -40.23 -0.25 -2.22 15 21 I 0.05 0.70 37.65 -73.02 -2.75 -2.05 15 22 H 0.05 1.24 7.84 -51.93 -0.41 0.84 15 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 24 H 0.04 0.82 5.64 -51.93 -0.29 0.53 15 25 H 0.10 2.70 5.95 -51.93 -0.31 2.39 15 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 15 27 H 0.26 7.02 8.31 -40.82 -0.34 6.69 15 28 H 0.40 8.17 8.00 -40.82 -0.33 7.84 15 29 H 0.19 1.35 8.06 -52.48 -0.42 0.92 15 LS Contribution 286.01 15.07 4.31 4.31 Total: -1.00 -29.20 286.01 -8.76 -37.96 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -2.54 Total: 3.87 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.94 Total: -4.33 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.61 Total: -46.73 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.06 Total: -11.12 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.49 Total: 2.30 kcal Atomic # 53 Polarization: 0.70 SS G_CDS: -2.75 Total: -2.05 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.20 -8.76 -37.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864057623.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.061 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds