Wall clock time and date at job start Tue Mar 31 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47366 * 25.15041 * 3 2 1 5 5 N 1.46499 * 109.47268 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00123 * 270.00262 * 5 4 3 7 7 C 1.50700 * 109.47101 * 269.99899 * 6 5 4 8 8 H 1.07998 * 119.99673 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99805 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00162 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99975 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46837 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47287 * 119.99595 * 11 9 7 14 14 H 1.48494 * 109.47203 * 239.99946 * 11 9 7 15 15 C 1.34779 * 119.99707 * 89.99931 * 5 4 3 16 16 O 1.21282 * 119.99922 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00037 * 0.02562 * 15 5 4 18 18 N 1.46506 * 109.46928 * 179.97438 * 17 15 5 19 19 N 1.28604 * 125.89080 * 269.68754 * 18 17 15 20 20 N 1.28462 * 111.23829 * 179.87842 * 19 18 17 21 21 C 1.34216 * 109.37820 * 0.39541 * 20 19 18 22 22 C 1.48167 * 127.07372 * 179.77053 * 21 20 19 23 23 C 1.39451 * 120.13394 * 144.72493 * 22 21 20 24 24 C 1.37990 * 119.86587 * 179.70015 * 23 22 21 25 25 C 1.38339 * 120.13036 * 0.57802 * 24 23 22 26 26 C 1.38344 * 120.27025 * 359.71642 * 25 24 23 27 27 C 1.37989 * 120.12766 * 359.97438 * 26 25 24 28 28 C 1.37056 * 125.88608 * 90.00143 * 18 17 15 29 29 C 1.43197 * 127.34971 * 359.92766 * 28 18 17 30 30 N 6.06161 * 136.02536 * 264.80239 * 2 1 3 31 31 H 1.09007 * 109.47439 * 265.14881 * 3 2 1 32 32 H 1.08998 * 109.46851 * 145.15056 * 3 2 1 33 33 H 1.09004 * 109.46622 * 60.00240 * 4 3 2 34 34 H 1.08998 * 109.47148 * 299.99832 * 4 3 2 35 35 H 1.08998 * 109.47257 * 30.00380 * 6 5 4 36 36 H 1.09005 * 109.47039 * 150.00075 * 6 5 4 37 37 H 0.96998 * 120.00012 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.47103 * 59.99751 * 17 15 5 39 39 H 1.09000 * 109.47247 * 299.99628 * 17 15 5 40 40 H 1.08003 * 120.06549 * 359.97438 * 23 22 21 41 41 H 1.08002 * 119.93358 * 180.29305 * 24 23 22 42 42 H 1.08005 * 119.86870 * 179.74211 * 25 24 23 43 43 H 1.07994 * 119.93683 * 180.02562 * 26 25 24 44 44 H 1.08002 * 120.06786 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3048 -0.6130 5 7 4.5836 -1.3039 -0.6136 6 6 5.3154 -0.7643 -1.7624 7 6 5.5669 -1.8655 -2.7600 8 1 5.2164 -2.8670 -2.5586 9 6 6.2446 -1.5944 -3.9296 10 7 6.6710 -0.3748 -4.1751 11 14 6.5558 -2.9592 -5.1666 12 1 5.9788 -4.2294 -4.6577 13 1 5.9180 -2.6090 -6.4611 14 1 8.0182 -3.1245 -5.3639 15 6 5.2582 -1.7994 0.4428 16 8 6.4710 -1.7990 0.4422 17 6 4.5054 -2.3548 1.6243 18 7 5.4581 -2.8278 2.6318 19 7 5.9445 -4.0157 2.7105 20 7 6.7559 -4.1216 3.7009 21 6 6.8275 -2.9466 4.3455 22 6 7.6409 -2.6332 5.5437 23 6 8.2121 -1.3697 5.6912 24 6 8.9634 -1.0818 6.8123 25 6 9.1605 -2.0477 7.7829 26 6 8.6015 -3.3050 7.6393 27 6 7.8429 -3.6026 6.5257 28 6 5.9801 -2.0821 3.6565 29 6 5.7120 -0.7075 3.9547 30 7 5.4983 0.3813 4.1915 31 1 2.9714 0.0877 1.0240 32 1 2.9709 0.8442 -0.5872 33 1 2.7554 -1.3918 -1.6371 34 1 2.7557 -2.1484 -0.0258 35 1 4.7257 0.0232 -2.2315 36 1 6.2677 -0.3540 -1.4264 37 1 7.1481 -0.1842 -4.9978 38 1 3.8795 -3.1856 1.2983 39 1 3.8781 -1.5744 2.0550 40 1 8.0630 -0.6164 4.9317 41 1 9.4024 -0.1021 6.9299 42 1 9.7528 -1.8191 8.6567 43 1 8.7584 -4.0547 8.4005 44 1 7.4067 -4.5843 6.4147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952992422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:07 Heat of formation + Delta-G solvation = 157.777135 kcal Electronic energy + Delta-G solvation = -30989.893709 eV Core-core repulsion = 26717.549132 eV Total energy + Delta-G solvation = -4272.344577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.48754 -39.74325 -39.23619 -37.11750 -37.03016 -35.66086 -34.95385 -33.06959 -32.84671 -31.22252 -31.13153 -30.20677 -29.33486 -27.11133 -24.72091 -24.32563 -23.82380 -23.00316 -22.47126 -21.31661 -19.79727 -18.83597 -17.99031 -17.64014 -17.35946 -16.74924 -16.55818 -16.11307 -15.88390 -15.32342 -15.12634 -14.95107 -14.89611 -14.31595 -14.11862 -13.94587 -13.83438 -13.80057 -13.62932 -13.39176 -13.30380 -13.07608 -12.90074 -12.67905 -12.56561 -12.28818 -12.17322 -11.98290 -11.58771 -11.51897 -11.45482 -11.22539 -11.16388 -11.03462 -10.86756 -10.77286 -10.32956 -9.90419 -9.87517 -9.47715 -9.20660 -8.68341 -8.59884 -8.20142 -6.21848 -4.27550 0.31690 1.05809 1.15428 1.47756 2.14602 2.29754 2.51351 2.64349 2.73196 2.91565 3.13975 3.21650 3.30722 3.32382 3.37616 3.55245 3.81471 3.85620 4.22195 4.30480 4.43021 4.44277 4.52969 4.70896 4.74273 4.78344 4.85211 4.86049 5.10000 5.12542 5.14938 5.21054 5.34534 5.39284 5.56350 5.67955 5.77759 5.79637 5.93029 6.19154 6.23607 6.24403 6.59858 6.66575 6.95956 7.03999 7.17676 7.40405 7.72453 7.82852 7.98988 8.08475 8.36568 8.76390 9.39078 10.86451 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.002682 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.609277 B =10437.667760 C =12139.561952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.214 3.786 3 C -0.052 4.052 4 C 0.109 3.891 5 N -0.584 5.584 6 C 0.246 3.754 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.898 3.102 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.495 3.505 16 O -0.507 6.507 17 C 0.079 3.921 18 N -0.240 5.240 19 N -0.023 5.023 20 N -0.250 5.250 21 C 0.094 3.906 22 C -0.018 4.018 23 C -0.094 4.094 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.081 4.081 28 C 0.049 3.951 29 C 0.282 3.718 30 N -0.367 5.367 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.265 0.735 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 -2.329 20.715 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.017 4.017 5 N -0.316 5.316 6 C 0.128 3.872 7 C -0.572 4.572 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.726 3.274 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.277 3.723 16 O -0.381 6.381 17 C -0.045 4.045 18 N -0.035 5.035 19 N -0.002 5.002 20 N -0.114 5.114 21 C -0.048 4.048 22 C -0.020 4.020 23 C -0.114 4.114 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.139 4.139 27 C -0.100 4.100 28 C -0.084 4.084 29 C -0.036 4.036 30 N -0.045 5.045 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.165 0.835 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.337 -1.994 20.179 20.550 hybrid contribution 0.570 0.034 -0.805 0.987 sum -2.767 -1.960 19.374 19.669 Atomic orbital electron populations 1.81242 1.12912 1.08396 1.08824 1.28961 0.94954 0.93388 0.93166 1.19872 0.81746 1.03024 1.04668 1.21479 0.81636 0.94485 1.04112 1.48214 1.05169 1.59696 1.18546 1.19493 0.92654 0.94470 0.80629 1.21387 1.37318 0.95743 1.02779 0.92081 1.24913 0.95053 0.95767 0.98112 1.69919 1.37918 1.19200 1.25941 0.86432 0.78254 0.81963 0.80767 1.19642 1.20886 1.20787 1.19954 0.88417 0.80328 0.83596 1.90824 1.12899 1.54733 1.79636 1.22447 0.90134 1.03810 0.88156 1.47028 1.30057 1.07678 1.18745 1.78219 1.07405 0.99977 1.14624 1.75236 1.12987 1.20483 1.02646 1.20628 0.97576 0.89437 0.97207 1.17600 0.98333 0.94716 0.91342 1.21215 0.96730 0.95366 0.98050 1.21064 0.98883 0.99812 0.93823 1.21300 0.99011 0.93470 0.98908 1.21118 0.97911 0.97038 0.97883 1.21234 0.97325 0.98756 0.92656 1.17179 1.06488 0.88513 0.96226 1.23524 0.94728 0.90330 0.94999 1.81277 1.06916 1.09804 1.06519 0.87969 0.86003 0.87639 0.90467 0.94096 0.93364 0.92538 0.83537 0.85326 0.86043 0.85456 0.85733 0.85415 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.79 18.54 42.16 0.78 -5.01 16 2 C 0.21 2.21 15.43 -20.76 -0.32 1.89 16 3 C -0.05 -0.44 6.03 -29.52 -0.18 -0.61 16 4 C 0.11 1.15 5.17 -4.04 -0.02 1.13 16 5 N -0.58 -9.28 2.46 -175.06 -0.43 -9.71 16 6 C 0.25 5.35 5.16 -5.19 -0.03 5.32 16 7 C -0.53 -13.42 9.39 -34.44 -0.32 -13.75 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 11 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.49 8.00 7.74 -10.99 -0.09 7.92 16 16 O -0.51 -10.95 16.01 5.56 0.09 -10.86 16 17 C 0.08 0.86 5.23 -5.19 -0.03 0.83 16 18 N -0.24 -3.19 2.87 -59.18 -0.17 -3.36 16 19 N -0.02 -0.34 13.09 60.35 0.79 0.45 16 20 N -0.25 -3.71 12.38 33.48 0.41 -3.29 16 21 C 0.09 1.24 6.83 -82.36 -0.56 0.68 16 22 C -0.02 -0.20 5.81 -104.91 -0.61 -0.81 16 23 C -0.09 -1.01 9.13 -39.22 -0.36 -1.37 16 24 C -0.12 -1.03 10.03 -39.63 -0.40 -1.42 16 25 C -0.11 -0.82 10.04 -39.50 -0.40 -1.22 16 26 C -0.12 -0.95 10.03 -39.63 -0.40 -1.34 16 27 C -0.08 -0.78 9.78 -39.22 -0.38 -1.16 16 28 C 0.05 0.64 6.87 -83.22 -0.57 0.07 16 29 C 0.28 3.49 13.44 -22.52 -0.30 3.19 16 30 N -0.37 -4.77 18.53 41.78 0.77 -4.00 16 31 H 0.10 0.66 7.22 -51.93 -0.38 0.28 16 32 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.11 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.08 0.58 6.44 -51.93 -0.33 0.24 16 35 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.15 1.14 7.40 -51.93 -0.38 0.76 16 39 H 0.13 0.90 6.91 -51.93 -0.36 0.55 16 40 H 0.12 1.36 6.83 -52.48 -0.36 1.00 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 404.45 15.07 6.10 6.10 Total: -1.00 -34.24 404.45 -5.69 -39.94 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.69 Total: -2.96 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -5.06 Total: 0.95 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 2.90 Total: -48.75 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.24 -5.69 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952992422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.714 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds