Wall clock time and date at job start Tue Mar 31 2020 04:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00205 * 2 1 4 4 H 1.48498 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46968 * 300.00355 * 3 2 1 6 6 H 1.48498 * 109.47004 * 59.99703 * 3 2 1 7 7 C 1.39891 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 185.53814 * 7 2 1 9 9 C 1.41159 * 119.99659 * 5.54505 * 7 2 1 10 10 C 1.40869 * 120.16150 * 214.25667 * 9 7 2 11 11 C 1.36373 * 119.83047 * 180.02562 * 10 9 7 12 12 C 1.39492 * 120.16533 * 0.02562 * 11 10 9 13 13 N 1.39224 * 119.83055 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99917 * 324.69269 * 13 12 11 15 15 O 1.21583 * 120.00097 * 4.27414 * 14 13 12 16 16 N 1.34774 * 119.99698 * 184.27001 * 14 13 12 17 17 C 1.40132 * 120.00072 * 184.06311 * 16 14 13 18 18 C 1.38842 * 120.00995 * 324.62151 * 17 16 14 19 19 C 1.38099 * 119.98075 * 179.73748 * 18 17 16 20 20 C 1.38714 * 120.01297 * 0.53802 * 19 18 17 21 21 O 1.35978 * 119.98221 * 179.69417 * 20 19 18 22 22 C 1.42904 * 117.00188 * 0.02603 * 21 20 19 23 23 F 1.39897 * 109.47221 * 59.99692 * 22 21 20 24 24 F 1.39898 * 109.46922 * 179.97438 * 22 21 20 25 25 F 1.39905 * 109.46995 * 299.99819 * 22 21 20 26 26 C 1.38717 * 120.03181 * 359.72232 * 20 19 18 27 27 C 1.38091 * 120.01442 * 0.02562 * 26 20 19 28 28 C 1.39487 * 120.33288 * 0.25653 * 12 11 10 29 29 C 1.36382 * 120.16465 * 359.44123 * 28 12 11 30 30 H 0.97005 * 120.00276 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.08724 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.91546 * 180.02562 * 11 10 9 33 33 H 0.96998 * 119.99821 * 144.70222 * 13 12 11 34 34 H 0.97000 * 120.00069 * 4.33974 * 16 14 13 35 35 H 1.08001 * 120.00923 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.98765 * 180.23351 * 19 18 17 37 37 H 1.07996 * 119.99412 * 180.02562 * 26 20 19 38 38 H 1.07995 * 120.00987 * 179.97438 * 27 26 20 39 39 H 1.07992 * 119.91618 * 179.70636 * 28 12 11 40 40 H 1.07995 * 120.08047 * 180.27536 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0845 -1.2136 0.0908 9 6 1.3074 -2.4311 -0.1170 10 6 1.7683 -3.5800 0.5553 11 6 1.0863 -4.7549 0.4365 12 6 -0.0648 -4.8209 -0.3487 13 7 -0.7554 -6.0242 -0.4654 14 6 -0.0794 -7.1900 -0.4860 15 8 1.1257 -7.1968 -0.3248 16 7 -0.7392 -8.3481 -0.6854 17 6 -0.0504 -9.5668 -0.6222 18 6 1.2579 -9.6496 -1.0797 19 6 1.9380 -10.8496 -1.0121 20 6 1.3106 -11.9747 -0.4976 21 8 1.9787 -13.1574 -0.4372 22 6 3.3236 -13.1683 -0.9203 23 9 4.0924 -12.2639 -0.1800 24 9 3.8575 -14.4542 -0.7843 25 9 3.3375 -12.7973 -2.2692 26 6 0.0017 -11.8939 -0.0454 27 6 -0.6778 -10.6933 -0.1075 28 6 -0.5241 -3.6890 -1.0221 29 6 0.1441 -2.5055 -0.9079 30 1 -0.4851 0.8401 -0.0004 31 1 2.6601 -3.5307 1.1626 32 1 1.4382 -5.6365 0.9517 33 1 -1.7231 -6.0234 -0.5321 34 1 -1.6901 -8.3378 -0.8765 35 1 1.7451 -8.7746 -1.4840 36 1 2.9569 -10.9132 -1.3645 37 1 -0.4861 -12.7701 0.3555 38 1 -1.6969 -10.6306 0.2442 39 1 -1.4133 -3.7489 -1.6319 40 1 -0.2152 -1.6289 -1.4263 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000151573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:05 Heat of formation + Delta-G solvation = -162.636452 kcal Electronic energy + Delta-G solvation = -31151.392298 eV Core-core repulsion = 26095.566730 eV Total energy + Delta-G solvation = -5055.825568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.70865 -48.44633 -48.28954 -40.89958 -40.00854 -38.25578 -37.19377 -34.63948 -34.40964 -32.93581 -31.35628 -29.78963 -29.47989 -28.53105 -26.18344 -24.98515 -23.51272 -22.89803 -21.69553 -20.93361 -20.26134 -19.97520 -19.41299 -19.37710 -18.19765 -17.83297 -17.28915 -16.85486 -16.11373 -15.57679 -15.45028 -15.24592 -15.14475 -14.92818 -14.84266 -14.75817 -14.69031 -14.42881 -14.37407 -14.19929 -13.94542 -13.60653 -13.55067 -13.15163 -12.87997 -12.68116 -12.52890 -12.16018 -11.81558 -11.53173 -11.45366 -11.19761 -10.93928 -10.59064 -10.30854 -10.12480 -9.90556 -9.54594 -9.30939 -9.22078 -8.84805 -8.12886 -7.59598 -6.94440 -6.70237 -4.35427 0.91058 1.06465 1.21878 2.52433 2.58345 2.76209 3.03683 3.05992 3.08641 3.14032 3.29586 3.50324 3.58857 3.74939 3.95642 4.34792 4.45767 4.52153 4.66372 4.79090 5.00143 5.17375 5.43287 5.61497 5.66440 5.96803 6.04731 6.11793 6.14335 6.31582 6.38582 6.66369 6.69151 6.82071 6.97919 7.09319 7.17923 7.28437 7.58946 7.75559 7.86135 8.03341 8.23662 8.29007 8.58248 8.76487 8.88591 8.96350 10.25506 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.001731 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.199280 B =16169.016174 C =17236.988196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.106 3.894 10 C -0.206 4.206 11 C -0.081 4.081 12 C 0.013 3.987 13 N -0.657 5.657 14 C 0.692 3.308 15 O -0.561 6.561 16 N -0.691 5.691 17 C 0.162 3.838 18 C -0.079 4.079 19 C -0.167 4.167 20 C 0.076 3.924 21 O -0.312 6.312 22 C 0.603 3.397 23 F -0.164 7.164 24 F -0.135 7.135 25 F -0.166 7.166 26 C -0.103 4.103 27 C -0.117 4.117 28 C -0.117 4.117 29 C -0.140 4.140 30 H 0.278 0.722 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.394 0.606 34 H 0.406 0.594 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -22.713 -2.520 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.104 3.896 10 C -0.227 4.227 11 C -0.101 4.101 12 C -0.079 4.079 13 N -0.303 5.303 14 C 0.394 3.606 15 O -0.437 6.437 16 N -0.339 5.339 17 C 0.066 3.934 18 C -0.099 4.099 19 C -0.187 4.187 20 C 0.034 3.966 21 O -0.232 6.232 22 C 0.512 3.488 23 F -0.146 7.146 24 F -0.116 7.116 25 F -0.148 7.148 26 C -0.122 4.122 27 C -0.138 4.138 28 C -0.137 4.137 29 C -0.160 4.160 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.228 0.772 34 H 0.241 0.759 35 H 0.172 0.828 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.109 0.891 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.326 -22.624 -2.308 22.860 hybrid contribution -0.363 0.808 -0.162 0.900 sum -2.688 -21.816 -2.470 22.120 Atomic orbital electron populations 1.69791 1.07289 1.28798 1.37811 1.25864 0.94908 1.01114 0.92499 0.86197 0.80746 0.80942 0.78412 1.18534 1.19913 1.20046 1.19544 0.95021 0.90179 1.44594 0.90450 1.17710 0.91547 0.92165 0.88204 1.20812 1.02818 0.93832 1.05200 1.20435 0.94971 0.97342 0.97336 1.17005 0.99456 0.83546 1.07912 1.42072 1.09012 1.03788 1.75378 1.16002 0.85617 0.80192 0.78812 1.90916 1.12042 1.85077 1.55640 1.42692 1.12479 1.03564 1.75198 1.17531 0.92936 0.84880 0.98068 1.21254 0.93748 0.97710 0.97212 1.21441 1.01146 0.92466 1.03604 1.18640 0.92622 0.82480 1.02880 1.86386 1.22907 1.34274 1.79673 1.19356 0.79564 0.74677 0.75166 1.93323 1.76384 1.67725 1.77124 1.93296 1.84743 1.37864 1.95711 1.93306 1.96088 1.91236 1.34127 1.20088 0.90893 0.98731 1.02506 1.20711 1.01042 0.91232 1.00791 1.20249 1.00215 0.93205 1.00058 1.20920 0.98264 0.95699 1.01082 0.91134 0.88533 0.87289 0.77230 0.75895 0.82831 0.84767 0.84196 0.84296 0.89086 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.64 10.95 55.54 0.61 -20.03 16 2 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 3 Si 0.91 18.70 29.56 -169.99 -5.03 13.68 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.19 9.03 -37.86 -0.34 -12.53 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.11 2.80 5.50 -106.80 -0.59 2.21 16 10 C -0.21 -5.14 9.74 -39.26 -0.38 -5.53 16 11 C -0.08 -1.88 8.61 -39.79 -0.34 -2.23 16 12 C 0.01 0.28 6.31 -83.57 -0.53 -0.25 16 13 N -0.66 -10.66 5.31 -14.10 -0.07 -10.74 16 14 C 0.69 11.20 8.23 -86.92 -0.72 10.49 16 15 O -0.56 -11.26 11.23 5.29 0.06 -11.20 16 16 N -0.69 -7.88 5.35 -14.19 -0.08 -7.96 16 17 C 0.16 1.89 6.29 -83.62 -0.53 1.36 16 18 C -0.08 -1.05 8.69 -39.41 -0.34 -1.39 16 19 C -0.17 -1.99 8.25 -39.46 -0.33 -2.32 16 20 C 0.08 0.83 6.48 -39.23 -0.25 0.57 16 21 O -0.31 -3.22 10.38 -19.67 -0.20 -3.42 16 22 C 0.60 5.81 3.42 101.05 0.35 6.15 16 23 F -0.16 -1.70 15.56 2.25 0.04 -1.67 16 24 F -0.13 -1.20 17.53 2.25 0.04 -1.16 16 25 F -0.17 -1.61 15.56 2.25 0.04 -1.57 16 26 C -0.10 -0.93 9.98 -39.46 -0.39 -1.32 16 27 C -0.12 -1.04 9.96 -39.41 -0.39 -1.43 16 28 C -0.12 -2.55 9.90 -39.79 -0.39 -2.95 16 29 C -0.14 -3.49 8.57 -39.26 -0.34 -3.83 16 30 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 31 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.11 2.53 6.22 -52.49 -0.33 2.20 16 33 H 0.39 4.82 8.84 -40.82 -0.36 4.46 16 34 H 0.41 3.05 8.85 -40.82 -0.36 2.69 16 35 H 0.15 2.37 6.26 -52.49 -0.33 2.05 16 36 H 0.13 1.52 5.09 -52.49 -0.27 1.25 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 3.12 6.46 -52.49 -0.34 2.78 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -29.95 357.11 -8.05 -38.00 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -3.22 Total: 11.98 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -5.61 Total: -11.29 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.46 Total: -38.73 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.14 Total: -14.62 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.11 Total: -4.40 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.95 -8.05 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000151573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.635 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds