Wall clock time and date at job start Tue Mar 31 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00205 * 2 1 4 4 H 1.48498 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46968 * 300.00355 * 3 2 1 6 6 H 1.48498 * 109.47004 * 59.99703 * 3 2 1 7 7 C 1.39891 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 185.53814 * 7 2 1 9 9 C 1.41159 * 119.99659 * 5.54505 * 7 2 1 10 10 C 1.40869 * 120.16150 * 214.25667 * 9 7 2 11 11 C 1.36373 * 119.83047 * 180.02562 * 10 9 7 12 12 C 1.39492 * 120.16533 * 0.02562 * 11 10 9 13 13 N 1.39224 * 119.83055 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99917 * 324.69269 * 13 12 11 15 15 O 1.21583 * 120.00097 * 4.27414 * 14 13 12 16 16 N 1.34774 * 119.99698 * 184.27001 * 14 13 12 17 17 C 1.40132 * 120.00072 * 184.06311 * 16 14 13 18 18 C 1.38842 * 120.00995 * 324.62151 * 17 16 14 19 19 C 1.38099 * 119.98075 * 179.73748 * 18 17 16 20 20 C 1.38714 * 120.01297 * 0.53802 * 19 18 17 21 21 O 1.35978 * 119.98221 * 179.69417 * 20 19 18 22 22 C 1.42904 * 117.00188 * 0.02603 * 21 20 19 23 23 F 1.39897 * 109.47221 * 59.99692 * 22 21 20 24 24 F 1.39898 * 109.46922 * 179.97438 * 22 21 20 25 25 F 1.39905 * 109.46995 * 299.99819 * 22 21 20 26 26 C 1.38717 * 120.03181 * 359.72232 * 20 19 18 27 27 C 1.38091 * 120.01442 * 0.02562 * 26 20 19 28 28 C 1.39487 * 120.33288 * 0.25653 * 12 11 10 29 29 C 1.36382 * 120.16465 * 359.44123 * 28 12 11 30 30 H 0.97005 * 120.00276 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.08724 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.91546 * 180.02562 * 11 10 9 33 33 H 0.96998 * 119.99821 * 144.70222 * 13 12 11 34 34 H 0.97000 * 120.00069 * 4.33974 * 16 14 13 35 35 H 1.08001 * 120.00923 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.98765 * 180.23351 * 19 18 17 37 37 H 1.07996 * 119.99412 * 180.02562 * 26 20 19 38 38 H 1.07995 * 120.00987 * 179.97438 * 27 26 20 39 39 H 1.07992 * 119.91618 * 179.70636 * 28 12 11 40 40 H 1.07995 * 120.08047 * 180.27536 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0845 -1.2136 0.0908 9 6 1.3074 -2.4311 -0.1170 10 6 1.7683 -3.5800 0.5553 11 6 1.0863 -4.7549 0.4365 12 6 -0.0648 -4.8209 -0.3487 13 7 -0.7554 -6.0242 -0.4654 14 6 -0.0794 -7.1900 -0.4860 15 8 1.1257 -7.1968 -0.3248 16 7 -0.7392 -8.3481 -0.6854 17 6 -0.0504 -9.5668 -0.6222 18 6 1.2579 -9.6496 -1.0797 19 6 1.9380 -10.8496 -1.0121 20 6 1.3106 -11.9747 -0.4976 21 8 1.9787 -13.1574 -0.4372 22 6 3.3236 -13.1683 -0.9203 23 9 4.0924 -12.2639 -0.1800 24 9 3.8575 -14.4542 -0.7843 25 9 3.3375 -12.7973 -2.2692 26 6 0.0017 -11.8939 -0.0454 27 6 -0.6778 -10.6933 -0.1075 28 6 -0.5241 -3.6890 -1.0221 29 6 0.1441 -2.5055 -0.9079 30 1 -0.4851 0.8401 -0.0004 31 1 2.6601 -3.5307 1.1626 32 1 1.4382 -5.6365 0.9517 33 1 -1.7231 -6.0234 -0.5321 34 1 -1.6901 -8.3378 -0.8765 35 1 1.7451 -8.7746 -1.4840 36 1 2.9569 -10.9132 -1.3645 37 1 -0.4861 -12.7701 0.3555 38 1 -1.6969 -10.6306 0.2442 39 1 -1.4133 -3.7489 -1.6319 40 1 -0.2152 -1.6289 -1.4263 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000151573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:04 Heat of formation + Delta-G solvation = -180.183791 kcal Electronic energy + Delta-G solvation = -31152.153208 eV Core-core repulsion = 26095.566730 eV Total energy + Delta-G solvation = -5056.586478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.49412 -49.21024 -49.09491 -41.99560 -41.04963 -39.59697 -38.53030 -36.20802 -35.59862 -34.63269 -32.18988 -31.50842 -31.01073 -29.87111 -27.15785 -26.58218 -24.48380 -23.94994 -23.23644 -22.55299 -21.69522 -20.79803 -20.25420 -20.20392 -19.46644 -19.11763 -18.94170 -17.75425 -17.52809 -16.96937 -16.63732 -16.27918 -16.16800 -15.98450 -15.71381 -15.66415 -15.57212 -15.52280 -15.48000 -15.20278 -15.12059 -14.90347 -14.54644 -14.37106 -14.28856 -13.99548 -13.78403 -13.65054 -13.45315 -13.26335 -12.83299 -12.66916 -12.39691 -12.28538 -11.86866 -11.60035 -11.35705 -11.17722 -10.94913 -10.54248 -10.12561 -9.46634 -9.08640 -8.71090 -8.54801 -6.29970 0.04743 0.22885 0.42744 0.82808 1.14238 1.40404 1.44800 1.54506 1.59234 1.80233 2.04219 2.24859 2.59473 2.72810 2.81022 2.94500 3.22197 3.62250 3.68607 3.70447 4.03177 4.21979 4.34248 4.40397 4.50433 4.62426 4.87650 4.92212 5.07998 5.10594 5.14952 5.21928 5.27681 5.32007 5.42236 5.45242 5.67169 5.79002 5.90775 6.01714 6.09944 6.19099 6.39884 6.67603 6.96407 7.00132 7.03661 7.52579 8.42789 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.001731 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.199280 B =16169.016174 C =17236.988196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.069 0.931 9 C 0.073 3.927 10 C -0.223 4.223 11 C -0.092 4.092 12 C 0.037 3.963 13 N -0.649 5.649 14 C 0.693 3.307 15 O -0.603 6.603 16 N -0.666 5.666 17 C 0.142 3.858 18 C -0.102 4.102 19 C -0.179 4.179 20 C 0.070 3.930 21 O -0.310 6.310 22 C 0.606 3.394 23 F -0.170 7.170 24 F -0.129 7.129 25 F -0.167 7.167 26 C -0.095 4.095 27 C -0.095 4.095 28 C -0.113 4.113 29 C -0.156 4.156 30 H 0.286 0.714 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.418 0.582 34 H 0.428 0.572 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.174 0.826 38 H 0.180 0.820 39 H 0.128 0.872 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 -24.523 -2.416 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.192 1.192 7 C -0.532 4.532 8 H 0.087 0.913 9 C 0.071 3.929 10 C -0.243 4.243 11 C -0.112 4.112 12 C -0.057 4.057 13 N -0.297 5.297 14 C 0.394 3.606 15 O -0.481 6.481 16 N -0.316 5.316 17 C 0.047 3.953 18 C -0.123 4.123 19 C -0.198 4.198 20 C 0.028 3.972 21 O -0.230 6.230 22 C 0.515 3.485 23 F -0.152 7.152 24 F -0.110 7.110 25 F -0.149 7.149 26 C -0.113 4.113 27 C -0.115 4.115 28 C -0.134 4.134 29 C -0.176 4.176 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.255 0.745 34 H 0.268 0.732 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.191 0.809 38 H 0.198 0.802 39 H 0.146 0.854 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.782 -24.503 -2.220 25.064 hybrid contribution 0.333 1.078 -0.206 1.147 sum -4.449 -23.425 -2.426 23.967 Atomic orbital electron populations 1.69833 1.08440 1.30089 1.38203 1.26648 0.95775 1.04046 0.91576 0.85129 0.79053 0.76428 0.78875 1.18719 1.18796 1.19195 1.19718 0.94894 0.91470 1.47150 0.91277 1.18007 0.92790 0.92718 0.89412 1.20922 1.03258 0.94463 1.05699 1.20529 0.95976 0.96609 0.98126 1.16989 0.98232 0.85169 1.05282 1.41795 1.10045 1.02355 1.75511 1.16126 0.85160 0.81069 0.78253 1.90914 1.14206 1.85833 1.57164 1.42300 1.13312 1.02028 1.73987 1.17725 0.92668 0.85599 0.99302 1.21073 0.95046 0.97211 0.98955 1.21397 1.01195 0.92745 1.04465 1.18879 0.93455 0.82123 1.02775 1.86388 1.22997 1.33997 1.79667 1.19312 0.79430 0.74733 0.75019 1.93313 1.76540 1.68043 1.77286 1.93310 1.84650 1.37394 1.95673 1.93305 1.96079 1.91286 1.34197 1.20555 0.89904 0.99912 1.00972 1.21086 1.02377 0.89591 0.98426 1.20510 1.00912 0.92155 0.99794 1.20906 0.98606 0.96593 1.01507 0.90361 0.88919 0.87415 0.74450 0.73216 0.85970 0.85238 0.80863 0.80233 0.85403 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.52 10.95 21.82 0.24 -43.29 16 2 C 0.03 1.63 5.31 85.24 0.45 2.09 16 3 Si 0.98 38.96 29.56 68.60 2.03 40.99 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.50 -27.64 9.03 23.39 0.21 -27.43 16 8 H 0.07 3.75 7.85 -2.91 -0.02 3.72 16 9 C 0.07 4.01 5.50 -21.28 -0.12 3.90 16 10 C -0.22 -11.63 9.74 22.48 0.22 -11.41 16 11 C -0.09 -4.38 8.61 22.14 0.19 -4.19 16 12 C 0.04 1.55 6.31 38.57 0.24 1.79 16 13 N -0.65 -19.68 5.31 -316.78 -1.68 -21.36 16 14 C 0.69 21.45 8.23 179.05 1.47 22.92 16 15 O -0.60 -24.44 11.23 -3.98 -0.04 -24.49 16 16 N -0.67 -13.44 5.35 -317.07 -1.70 -15.14 16 17 C 0.14 3.02 6.29 38.10 0.24 3.26 16 18 C -0.10 -2.73 8.69 22.38 0.19 -2.53 16 19 C -0.18 -4.24 8.25 22.35 0.18 -4.05 16 20 C 0.07 1.39 6.48 22.50 0.15 1.53 16 21 O -0.31 -5.85 10.38 -93.30 -0.97 -6.81 16 22 C 0.61 11.21 3.42 113.37 0.39 11.59 16 23 F -0.17 -3.52 15.56 44.97 0.70 -2.82 16 24 F -0.13 -2.16 17.53 44.97 0.79 -1.37 16 25 F -0.17 -3.18 15.56 44.97 0.70 -2.48 16 26 C -0.09 -1.34 9.98 22.35 0.22 -1.11 16 27 C -0.09 -1.28 9.96 22.38 0.22 -1.06 16 28 C -0.11 -4.86 9.90 22.14 0.22 -4.64 16 29 C -0.16 -7.96 8.57 22.48 0.19 -7.77 16 30 H 0.29 13.39 8.30 -92.70 -0.77 12.62 16 31 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.11 5.12 6.22 -2.91 -0.02 5.11 16 33 H 0.42 8.76 8.84 -92.71 -0.82 7.94 16 34 H 0.43 4.70 8.85 -92.71 -0.82 3.88 16 35 H 0.12 4.02 6.26 -2.91 -0.02 4.00 16 36 H 0.13 3.05 5.09 -2.91 -0.01 3.04 16 37 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.11 5.75 6.46 -2.91 -0.02 5.73 16 Total: -1.00 -69.00 357.11 4.27 -64.72 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.47 Total: 29.15 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 4.68 Total: -17.11 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.14 Total: -79.78 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.01 Total: -31.30 kcal Atomic # 9 Polarization: -8.85 SS G_CDS: 2.19 Total: -6.67 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -69.00 4.27 -64.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000151573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.460 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds