Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35994 * 117.00435 * 2 1 4 4 C 1.38569 * 120.06984 * 359.72213 * 3 2 1 5 5 C 1.38243 * 119.99772 * 179.79155 * 4 3 2 6 6 C 1.38251 * 120.14512 * 0.46491 * 5 4 3 7 7 S 1.76208 * 119.92448 * 179.76806 * 6 5 4 8 8 O 1.42093 * 106.40153 * 23.55887 * 7 6 5 9 9 O 1.42098 * 106.40032 * 156.47869 * 7 6 5 10 10 N 1.65600 * 107.21495 * 270.01673 * 7 6 5 11 11 C 1.36938 * 119.99751 * 90.00350 * 10 7 6 12 12 H 1.08002 * 120.00307 * 318.38188 * 11 10 7 13 13 C 1.38817 * 120.00141 * 138.37891 * 11 10 7 14 14 N 1.31617 * 119.99491 * 340.66794 * 13 11 10 15 15 Si 1.86800 * 120.00060 * 160.67213 * 13 11 10 16 16 H 1.48496 * 109.47433 * 89.99847 * 15 13 11 17 17 H 1.48499 * 109.46793 * 210.00258 * 15 13 11 18 18 H 1.48501 * 109.46902 * 329.99548 * 15 13 11 19 19 C 1.46492 * 120.00470 * 269.99719 * 10 7 6 20 20 C 1.50708 * 109.46810 * 97.44279 * 19 10 7 21 21 C 1.34509 * 125.78513 * 84.41296 * 20 19 10 22 22 C 1.41388 * 106.83688 * 179.89068 * 21 20 19 23 23 C 1.34512 * 106.83889 * 0.36434 * 22 21 20 24 24 O 1.34303 * 125.78647 * 264.71470 * 20 19 10 25 25 C 1.38241 * 120.14753 * 359.78511 * 6 5 4 26 26 C 1.38559 * 119.99810 * 359.97438 * 25 6 5 27 27 O 1.36000 * 120.07116 * 180.02562 * 26 25 6 28 28 C 1.42899 * 116.99776 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47162 * 300.00240 * 1 2 3 30 30 H 1.09001 * 109.47249 * 59.99888 * 1 2 3 31 31 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.00261 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.92542 * 180.20624 * 5 4 3 34 34 H 0.97007 * 119.99694 * 179.97438 * 14 13 11 35 35 H 1.08993 * 109.47852 * 217.44525 * 19 10 7 36 36 H 1.09005 * 109.47011 * 337.44949 * 19 10 7 37 37 H 1.07993 * 126.58465 * 0.02562 * 21 20 19 38 38 H 1.08003 * 126.57549 * 180.16854 * 22 21 20 39 39 H 1.08004 * 125.78947 * 179.75101 * 23 22 21 40 40 H 1.08007 * 119.99868 * 180.02562 * 25 6 5 41 41 H 1.09001 * 109.47423 * 300.00048 * 28 27 26 42 42 H 1.09001 * 109.47271 * 60.00416 * 28 27 26 43 43 H 1.09008 * 109.46867 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9225 3.6057 -0.0015 6 6 3.3030 3.6797 -0.0010 7 16 4.0990 5.2518 -0.0016 8 8 3.1653 6.1745 0.5424 9 8 5.3951 5.0454 0.5430 10 7 4.3205 5.6883 -1.5836 11 6 3.3541 6.4046 -2.2379 12 1 2.3120 6.1560 -2.1013 13 6 3.7138 7.4504 -3.0770 14 7 4.9026 8.0041 -2.9658 15 14 2.5105 8.0718 -4.3636 16 1 1.6778 9.1543 -3.7807 17 1 3.2624 8.5993 -5.5305 18 1 1.6350 6.9555 -4.8025 19 6 5.5504 5.3084 -2.2830 20 6 5.3034 4.0609 -3.0916 21 6 4.7788 4.0169 -4.3294 22 6 4.7285 2.6546 -4.7047 23 6 5.2179 1.9472 -3.6706 24 8 5.5645 2.8042 -2.6963 25 6 4.0603 2.5232 -0.0004 26 6 3.4359 1.2863 0.0003 27 8 4.1795 0.1476 0.0014 28 6 5.6003 0.3006 0.0012 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2147 2.3197 -0.0099 33 1 1.3343 4.5114 -0.0026 34 1 5.1541 8.7347 -3.5524 35 1 5.8556 6.1172 -2.9469 36 1 6.3389 5.1191 -1.5546 37 1 4.4595 4.8603 -4.9235 38 1 4.3639 2.2580 -5.6408 39 1 5.3152 0.8723 -3.6304 40 1 5.1387 2.5838 0.0004 41 1 5.9065 0.8495 -0.8893 42 1 5.9065 0.8511 0.8907 43 1 6.0715 -0.6824 0.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000170849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -84.082189 kcal Electronic energy + Delta-G solvation = -33111.943326 eV Core-core repulsion = 28639.106156 eV Total energy + Delta-G solvation = -4472.837170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.101 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.88183 -40.45337 -38.43914 -36.73827 -36.17669 -35.83828 -34.73773 -32.32834 -31.69984 -30.39870 -30.25931 -29.45681 -27.35334 -27.15790 -25.77818 -23.65341 -22.60081 -22.09364 -21.09908 -19.94366 -19.03352 -18.45024 -17.72109 -17.15171 -16.73812 -16.62091 -16.16759 -16.06208 -15.85392 -15.31087 -15.22162 -14.73222 -14.68491 -14.51582 -14.35095 -13.94358 -13.38229 -13.08819 -12.89148 -12.72489 -12.47488 -12.28211 -12.20499 -12.09766 -11.65190 -11.53283 -11.48023 -11.24759 -11.23674 -11.14224 -11.05917 -10.98347 -10.93657 -10.81051 -10.58817 -10.23720 -10.12559 -9.30143 -9.13898 -8.73773 -7.96094 -7.87163 -7.81990 -6.40840 -4.14480 1.06125 1.45491 1.50580 2.35756 3.14452 3.15732 3.22993 3.25984 3.27247 3.33272 3.59924 3.64666 4.10882 4.43887 4.69710 4.76766 4.90577 4.96122 5.03603 5.10770 5.16168 5.26165 5.29850 5.33834 5.38612 5.50079 5.59918 5.60539 5.64924 5.72643 5.74189 5.97646 6.12722 6.27012 6.41701 6.42533 6.61818 6.68767 6.71435 6.88394 7.01141 7.14387 7.16440 7.51799 7.57735 7.84511 8.28307 8.86356 9.25764 10.64160 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.004673 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.444181 B = 5990.769723 C = 6454.373209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.139 3.861 4 C -0.199 4.199 5 C -0.011 4.011 6 C -0.654 4.654 7 S 2.639 3.361 8 O -0.963 6.963 9 O -0.995 6.995 10 N -0.831 5.831 11 C -0.288 4.288 12 H 0.089 0.911 13 C 0.048 3.952 14 N -0.856 5.856 15 Si 0.912 3.088 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.195 3.805 20 C -0.006 4.006 21 C -0.194 4.194 22 C -0.214 4.214 23 C -0.065 4.065 24 O -0.183 6.183 25 C -0.065 4.065 26 C 0.075 3.925 27 O -0.309 6.309 28 C 0.020 3.980 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.271 0.729 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.189 0.811 40 H 0.148 0.852 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -13.475 0.155 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.093 3.907 4 C -0.219 4.219 5 C -0.030 4.030 6 C -0.738 4.738 7 S 2.736 3.264 8 O -0.953 6.953 9 O -0.984 6.984 10 N -0.661 5.661 11 C -0.423 4.423 12 H 0.106 0.894 13 C -0.160 4.160 14 N -0.495 5.495 15 Si 0.738 3.262 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.192 1.192 19 C 0.067 3.933 20 C -0.058 4.058 21 C -0.214 4.214 22 C -0.233 4.233 23 C -0.133 4.133 24 O -0.079 6.079 25 C -0.084 4.084 26 C 0.030 3.970 27 O -0.223 6.223 28 C -0.075 4.075 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.099 0.901 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.206 0.794 40 H 0.166 0.834 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.590 -13.402 1.248 13.707 hybrid contribution -1.143 -0.151 -1.333 1.762 sum -3.733 -13.553 -0.085 14.058 Atomic orbital electron populations 1.23096 0.78550 1.03879 1.01548 1.86163 1.21126 1.26145 1.88454 1.18406 0.89225 0.85016 0.98026 1.21123 0.99972 0.91516 1.09270 1.20657 0.92615 0.97938 0.91777 1.31210 1.04735 1.22197 1.15658 1.04594 0.73301 0.73217 0.75261 1.93451 1.64851 1.59261 1.77687 1.93416 1.39442 1.86669 1.78912 1.52542 1.25331 1.64194 1.24004 1.18991 0.88079 1.10649 1.24610 0.89353 1.25436 0.96829 0.94108 0.99675 1.69923 1.20586 1.21997 1.36957 0.86172 0.80469 0.79333 0.80236 1.20002 1.20616 1.19210 1.19955 0.87494 0.89110 0.96734 1.23859 1.01874 0.83941 0.96170 1.21507 1.06029 0.96791 0.97116 1.21756 1.06932 0.94134 1.00510 1.23716 1.05874 0.95244 0.88427 1.83998 1.66385 1.16423 1.41133 1.20769 1.00421 0.89795 0.97459 1.18165 0.88162 0.86182 1.04533 1.86105 1.18699 1.27927 1.89564 1.23141 0.78555 1.03628 1.02156 0.92543 0.92461 0.88241 0.84345 0.83832 0.91869 0.84443 0.90147 0.83836 0.84519 0.79442 0.83447 0.91951 0.92553 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.42 10.28 -34.22 -0.35 -4.77 16 3 C 0.14 2.27 6.70 -39.12 -0.26 2.00 16 4 C -0.20 -3.07 9.04 -39.46 -0.36 -3.42 16 5 C -0.01 -0.19 9.51 -39.57 -0.38 -0.56 16 6 C -0.65 -12.98 5.97 -39.58 -0.24 -13.22 16 7 S 2.64 60.67 5.65 -107.50 -0.61 60.06 16 8 O -0.96 -24.37 16.49 -57.17 -0.94 -25.31 16 9 O -0.99 -23.80 15.81 -57.17 -0.90 -24.70 16 10 N -0.83 -19.53 2.78 -61.09 -0.17 -19.70 16 11 C -0.29 -7.07 8.78 -15.06 -0.13 -7.20 16 12 H 0.09 2.12 7.90 -52.49 -0.41 1.70 16 13 C 0.05 1.17 5.04 -17.43 -0.09 1.08 16 14 N -0.86 -21.56 11.54 55.49 0.64 -20.92 16 15 Si 0.91 19.05 29.60 -169.99 -5.03 14.02 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 C 0.19 4.25 5.86 -5.19 -0.03 4.22 16 20 C -0.01 -0.12 6.84 -35.62 -0.24 -0.37 16 21 C -0.19 -3.69 10.81 -39.70 -0.43 -4.12 16 22 C -0.21 -3.49 10.91 -39.70 -0.43 -3.92 16 23 C -0.06 -1.00 12.09 29.41 0.36 -0.65 16 24 O -0.18 -3.31 9.89 5.71 0.06 -3.25 16 25 C -0.06 -1.19 7.91 -39.46 -0.31 -1.50 16 26 C 0.08 1.30 6.70 -39.13 -0.26 1.04 16 27 O -0.31 -4.86 10.28 -34.24 -0.35 -5.22 16 28 C 0.02 0.25 9.81 101.05 0.99 1.24 16 29 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 30 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.63 6.30 -52.49 -0.33 1.30 16 33 H 0.14 2.46 7.61 -52.49 -0.40 2.06 16 34 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.14 3.16 5.70 -51.93 -0.30 2.86 16 36 H 0.08 1.70 6.88 -51.93 -0.36 1.34 16 37 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 38 H 0.14 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.19 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.15 2.63 5.85 -52.48 -0.31 2.32 16 41 H 0.06 0.77 7.51 -51.93 -0.39 0.38 16 42 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 43 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -31.60 378.94 -7.71 -39.31 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.94 Total: 8.92 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -0.82 Total: -24.16 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.47 Total: -40.62 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -2.49 Total: -63.25 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 16 Polarization: 60.67 SS G_CDS: -0.61 Total: 60.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.60 -7.71 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.770 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds