Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99967 * 2 1 4 4 H 1.48504 * 109.47207 * 270.00207 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99831 * 3 2 1 6 6 H 1.48499 * 109.47277 * 150.00045 * 3 2 1 7 7 C 1.38800 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00328 * 161.64880 * 7 2 1 9 9 N 1.37130 * 120.00050 * 341.64763 * 7 2 1 10 10 C 1.38655 * 124.79207 * 150.34025 * 9 7 2 11 11 C 1.39124 * 132.14214 * 359.97438 * 10 9 7 12 12 C 1.37929 * 120.07567 * 179.70179 * 11 10 9 13 13 C 1.38668 * 120.57453 * 0.54825 * 12 11 10 14 14 Br 1.89101 * 119.91182 * 179.72120 * 13 12 11 15 15 C 1.38061 * 120.17199 * 359.44844 * 13 12 11 16 16 C 1.39177 * 119.76155 * 0.27031 * 15 13 12 17 17 C 1.47660 * 133.29782 * 180.02562 * 16 15 13 18 18 N 1.31869 * 133.01665 * 359.96976 * 17 16 15 19 19 C 1.33637 * 119.67779 * 179.97438 * 18 17 16 20 20 C 1.40659 * 120.86683 * 180.02562 * 19 18 17 21 21 C 1.36064 * 119.73151 * 179.97438 * 20 19 18 22 22 C 1.39410 * 120.94833 * 359.97438 * 21 20 19 23 23 C 1.36063 * 121.00172 * 359.97438 * 22 21 20 24 24 C 1.40658 * 119.77525 * 0.02562 * 23 22 21 25 25 N 1.33667 * 120.82866 * 180.02562 * 24 23 22 26 26 C 1.32068 * 119.92351 * 179.97438 * 25 24 23 27 27 H 0.97006 * 119.99847 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.96156 * 359.96752 * 11 10 9 29 29 H 1.07996 * 119.71121 * 180.27355 * 12 11 10 30 30 H 1.08003 * 120.11343 * 180.25046 * 15 13 12 31 31 H 1.07999 * 120.13068 * 359.97194 * 20 19 18 32 32 H 1.07998 * 119.52401 * 180.02562 * 21 20 19 33 33 H 1.07996 * 119.49996 * 180.02562 * 22 21 20 34 34 H 1.08004 * 120.11616 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0091 -1.2021 0.0005 8 1 3.0478 -1.2260 -0.2939 9 7 1.3757 -2.3593 0.3750 10 6 1.6918 -3.6232 -0.0993 11 6 2.6478 -4.0675 -1.0071 12 6 2.7516 -5.4115 -1.2994 13 6 1.9012 -6.3306 -0.7037 14 35 2.0549 -8.1679 -1.1239 15 6 0.9464 -5.9085 0.1998 16 6 0.8361 -4.5555 0.5068 17 6 -0.0512 -3.7899 1.4050 18 7 -1.0333 -4.1404 2.2124 19 6 -1.6733 -3.2051 2.9206 20 6 -2.7239 -3.5509 3.7896 21 6 -3.3593 -2.5799 4.5001 22 6 -2.9841 -1.2426 4.3808 23 6 -1.9720 -0.8699 3.5513 24 6 -1.2903 -1.8440 2.7996 25 7 -0.2926 -1.5014 1.9787 26 6 0.3356 -2.4308 1.2817 27 1 -0.4850 0.8401 0.0004 28 1 3.3124 -3.3597 -1.4804 29 1 3.4988 -5.7504 -2.0017 30 1 0.2872 -6.6256 0.6663 31 1 -3.0250 -4.5830 3.8923 32 1 -4.1652 -2.8493 5.1666 33 1 -3.5042 -0.4910 4.9561 34 1 -1.6930 0.1703 3.4702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000205530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = 112.964857 kcal Electronic energy + Delta-G solvation = -23573.628746 eV Core-core repulsion = 20096.633362 eV Total energy + Delta-G solvation = -3476.995385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 367.002 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.82242 -40.88344 -38.46021 -37.25218 -35.43438 -34.68717 -32.74721 -32.39386 -31.06338 -30.29326 -29.56814 -27.41616 -25.89969 -24.41466 -23.26702 -22.63461 -22.23023 -20.51043 -19.53492 -18.49732 -17.85308 -17.32549 -16.98056 -16.49113 -16.18402 -15.83548 -15.60578 -15.32725 -15.04442 -14.85345 -14.77148 -14.45725 -13.86167 -13.55996 -13.09860 -12.90443 -12.85338 -12.75682 -12.60832 -12.42762 -12.28424 -12.26074 -12.08138 -12.03213 -11.31707 -11.17940 -10.67790 -10.42178 -9.72189 -9.52473 -9.08416 -8.85238 -8.41811 -6.27389 -0.84549 -0.34395 0.43660 0.55195 0.71406 1.29961 1.34278 1.40899 1.49626 1.90675 2.15352 2.32692 2.64830 2.90621 2.98725 3.32172 3.40702 3.67885 3.72277 3.92979 4.03695 4.14257 4.27183 4.33852 4.38102 4.45548 4.58266 4.81708 4.95566 4.99685 5.09708 5.17261 5.24106 5.30182 5.35572 5.41609 5.50496 5.58023 5.81536 5.97444 6.30347 6.51681 6.81969 7.02627 7.40077 8.43926 Molecular weight = 367.00amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.003995 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.010938 B = 7007.557617 C = 9817.877633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.385 4.385 8 H 0.120 0.880 9 N -0.313 5.313 10 C 0.138 3.862 11 C -0.132 4.132 12 C -0.038 4.038 13 C -0.144 4.144 14 Br -0.037 7.037 15 C -0.008 4.008 16 C -0.144 4.144 17 C 0.058 3.942 18 N -0.413 5.413 19 C 0.016 3.984 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.077 4.077 23 C -0.120 4.120 24 C 0.095 3.905 25 N -0.434 5.434 26 C 0.270 3.730 27 H 0.277 0.723 28 H 0.147 0.853 29 H 0.170 0.830 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -8.751 2.295 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.197 4.197 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.511 4.511 8 H 0.138 0.862 9 N 0.014 4.986 10 C 0.026 3.974 11 C -0.154 4.154 12 C -0.060 4.060 13 C -0.225 4.225 14 Br 0.048 6.952 15 C -0.029 4.029 16 C -0.151 4.151 17 C -0.095 4.095 18 N -0.128 5.128 19 C -0.115 4.115 20 C -0.101 4.101 21 C -0.130 4.130 22 C -0.097 4.097 23 C -0.140 4.140 24 C -0.040 4.040 25 N -0.155 5.155 26 C 0.023 3.977 27 H 0.087 0.913 28 H 0.164 0.836 29 H 0.188 0.812 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.194 0.806 33 H 0.189 0.811 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.351 -8.971 2.094 9.219 hybrid contribution 0.198 1.566 -0.173 1.588 sum -0.154 -7.405 1.921 7.652 Atomic orbital electron populations 1.70040 1.08236 1.29644 1.37843 1.26360 0.95888 1.03469 0.93944 0.84859 0.78253 0.75634 0.79144 1.18442 1.20487 1.18288 1.20040 0.96971 0.83758 1.50320 0.86215 1.40069 1.25153 1.05327 1.28021 1.19005 0.97724 0.83729 0.96918 1.20307 0.99277 0.96462 0.99381 1.21054 0.97311 0.90002 0.97616 1.21327 1.03632 0.91631 1.05912 1.96591 1.98061 1.06938 1.93644 1.20430 0.95802 0.92419 0.94274 1.18324 0.99581 0.93981 1.03182 1.20673 0.96974 0.92414 0.99430 1.67757 1.04693 1.36124 1.04212 1.19906 1.00544 0.90001 1.01088 1.20958 0.93032 1.01773 0.94316 1.21283 1.00518 0.91693 0.99512 1.21328 0.94591 0.97738 0.96083 1.20850 0.97524 0.98191 0.97471 1.20081 0.94243 0.93908 0.95770 1.67770 1.07415 1.34420 1.05863 1.19623 0.94382 0.90010 0.93679 0.91285 0.83556 0.81250 0.84353 0.83373 0.80586 0.81131 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.13 10.82 21.64 0.23 -45.90 16 2 C 0.01 0.76 5.03 84.88 0.43 1.19 16 3 Si 1.00 40.10 29.59 68.60 2.03 42.13 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.38 -20.15 9.74 84.00 0.82 -19.33 16 8 H 0.12 5.72 7.89 -2.91 -0.02 5.69 16 9 N -0.31 -16.69 2.90 -339.20 -0.98 -17.67 16 10 C 0.14 6.36 6.71 38.78 0.26 6.62 16 11 C -0.13 -4.79 9.88 22.41 0.22 -4.57 16 12 C -0.04 -1.13 9.75 22.30 0.22 -0.92 16 13 C -0.14 -4.48 6.22 22.33 0.14 -4.34 16 14 Br -0.04 -0.92 33.69 -20.37 -0.69 -1.60 16 15 C -0.01 -0.29 9.82 22.45 0.22 -0.07 16 16 C -0.14 -6.50 6.34 -20.06 -0.13 -6.63 16 17 C 0.06 2.95 7.49 42.52 0.32 3.27 16 18 N -0.41 -19.59 10.48 -177.00 -1.85 -21.44 16 19 C 0.02 0.70 6.59 40.37 0.27 0.97 16 20 C -0.08 -2.59 9.98 22.36 0.22 -2.37 16 21 C -0.11 -2.62 9.95 22.05 0.22 -2.40 16 22 C -0.08 -1.99 9.95 22.05 0.22 -1.77 16 23 C -0.12 -4.43 9.98 22.36 0.22 -4.20 16 24 C 0.09 4.42 6.59 40.37 0.27 4.68 16 25 N -0.43 -23.63 8.04 -184.81 -1.49 -25.11 16 26 C 0.27 14.88 6.91 134.12 0.93 15.81 16 27 H 0.28 14.57 8.31 -92.70 -0.77 13.80 16 28 H 0.15 4.77 8.06 -2.91 -0.02 4.74 16 29 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -69.54 320.39 3.26 -66.28 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.16 Total: 17.39 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.84 Total: -14.06 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -4.09 Total: -110.13 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.60 kcal Total: -69.54 3.26 -66.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000205530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.247 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds