Wall clock time and date at job start Tue Mar 31 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35974 * 116.99940 * 2 1 4 4 C 1.38722 * 119.97998 * 180.02562 * 3 2 1 5 5 C 1.38090 * 120.01266 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.98445 * 359.97412 * 5 4 3 7 7 N 1.40033 * 120.01585 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00083 * 187.97029 * 7 6 5 9 9 C 1.50694 * 109.47476 * 261.41732 * 8 7 6 10 10 H 1.07999 * 120.00385 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00079 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99678 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99891 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47129 * 59.99859 * 13 11 9 15 15 H 1.48495 * 109.46941 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47250 * 299.99809 * 13 11 9 17 17 C 1.34778 * 120.00282 * 7.97450 * 7 6 5 18 18 O 1.21705 * 119.99694 * 3.18824 * 17 7 6 19 19 C 1.46815 * 120.00112 * 183.19292 * 17 7 6 20 20 C 1.43200 * 120.00081 * 351.78204 * 19 17 7 21 21 N 9.02654 * 110.33835 * 0.17162 * 2 1 3 22 22 C 1.38596 * 120.00234 * 171.78039 * 19 17 7 23 23 C 1.40709 * 120.00615 * 179.97438 * 22 19 17 24 24 C 1.38472 * 126.14761 * 180.02562 * 23 22 19 25 25 C 1.40027 * 106.49601 * 179.97438 * 24 23 22 26 26 C 1.35374 * 107.26284 * 0.02562 * 25 24 23 27 27 C 1.50698 * 125.44648 * 180.02562 * 26 25 24 28 28 O 1.33933 * 109.10511 * 359.76717 * 26 25 24 29 29 C 1.38861 * 119.96661 * 0.25196 * 6 5 4 30 30 C 1.38084 * 119.98304 * 359.54428 * 29 6 5 31 31 H 1.08999 * 109.47665 * 59.99844 * 1 2 3 32 32 H 1.09001 * 109.47357 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47230 * 299.99677 * 1 2 3 34 34 H 1.07996 * 119.99642 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00889 * 179.97438 * 5 4 3 36 36 H 1.09009 * 109.47027 * 21.41846 * 8 7 6 37 37 H 1.09003 * 109.47284 * 141.40711 * 8 7 6 38 38 H 0.97001 * 119.99748 * 180.02562 * 12 11 9 39 39 H 1.08008 * 119.99659 * 0.02562 * 22 19 17 40 40 H 1.08003 * 126.75303 * 359.94458 * 24 23 22 41 41 H 1.08007 * 126.36879 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47010 * 90.00252 * 27 26 25 43 43 H 1.09001 * 109.46961 * 210.00131 * 27 26 25 44 44 H 1.09000 * 109.47087 * 329.99707 * 27 26 25 45 45 H 1.07999 * 120.00971 * 179.74368 * 29 6 5 46 46 H 1.07999 * 119.99159 * 180.18410 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0592 2.5137 0.0000 6 6 3.3033 3.6785 0.0005 7 7 3.9390 4.9262 0.0016 8 6 3.1520 6.1492 0.1781 9 6 2.8860 6.7740 -1.1672 10 1 3.2655 6.3070 -2.0640 11 6 2.1588 7.9423 -1.2531 12 7 1.6971 8.5112 -0.1610 13 14 1.8297 8.7171 -2.9206 14 1 1.0746 7.7613 -3.7702 15 1 1.0319 9.9567 -2.7417 16 1 3.1204 9.0489 -3.5758 17 6 5.2749 5.0020 -0.1598 18 8 5.9214 3.9914 -0.3644 19 6 5.9503 6.3037 -0.0886 20 6 5.1785 7.5082 -0.0245 21 7 4.5663 8.4638 0.0254 22 6 7.3348 6.3668 -0.0836 23 6 7.9821 7.6143 -0.0159 24 6 9.3507 7.8248 -0.0035 25 6 9.5392 9.2103 0.0706 26 6 8.3123 9.7817 0.1005 27 6 8.0391 11.2616 0.1789 28 8 7.3802 8.8216 0.0437 29 6 1.9166 3.6055 0.0058 30 6 1.2904 2.3748 0.0010 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 4.0194 0.3777 -0.0005 35 1 5.1378 2.5698 0.0000 36 1 2.2047 5.9054 0.6592 37 1 3.7060 6.8510 0.8016 38 1 1.1852 9.3329 -0.2214 39 1 7.9169 5.4583 -0.1323 40 1 10.1211 7.0689 -0.0426 41 1 10.4872 9.7271 0.0986 42 1 7.9735 11.6728 -0.8284 43 1 7.0979 11.4301 0.7021 44 1 8.8483 11.7523 0.7197 45 1 1.3280 4.5109 0.0104 46 1 0.2119 2.3178 0.0021 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001770590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:17 Heat of formation + Delta-G solvation = 65.176470 kcal Electronic energy + Delta-G solvation = -32528.633776 eV Core-core repulsion = 28160.376752 eV Total energy + Delta-G solvation = -4368.257024 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54206 -40.47877 -39.29964 -37.01929 -36.45661 -34.76485 -33.66088 -33.24968 -32.51768 -31.21103 -30.62407 -29.28118 -27.49378 -27.26175 -26.46988 -23.63928 -23.37114 -22.08224 -21.86016 -21.58035 -20.26587 -19.90556 -17.99597 -17.80854 -16.79363 -16.44832 -16.25120 -16.19593 -15.49395 -15.39928 -15.06490 -14.79041 -14.64052 -14.17931 -14.06926 -13.88449 -13.33925 -13.15771 -13.11217 -13.00332 -12.79269 -12.69250 -12.63781 -12.51841 -12.42280 -12.20400 -12.09699 -11.92985 -11.79510 -11.63340 -11.24573 -10.92150 -10.88920 -10.50978 -10.33691 -10.25635 -9.97682 -9.90715 -9.67515 -8.98184 -8.84168 -8.52205 -8.49486 -7.72311 -6.94994 -6.17570 -4.24651 0.28810 1.81242 1.83740 2.13252 2.73717 2.87409 3.24139 3.28532 3.29016 3.37306 3.45270 3.61198 3.88032 4.30769 4.38467 4.47404 4.63605 4.69488 4.76989 4.89300 5.11113 5.17595 5.20110 5.24612 5.27631 5.32581 5.37220 5.42323 5.52364 5.57120 5.61909 5.75894 5.76817 5.91129 5.96952 6.05230 6.10720 6.17861 6.31763 6.46363 6.52941 6.70112 6.78418 6.83927 7.03920 7.09842 7.13751 7.53780 7.71903 7.78979 7.93963 7.99865 8.52574 8.72026 8.78824 9.42176 10.88679 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.003258 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.223301 B = 8592.707931 C =10899.980939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.086 3.914 4 C -0.135 4.135 5 C -0.133 4.133 6 C 0.135 3.865 7 N -0.520 5.520 8 C 0.207 3.793 9 C -0.557 4.557 10 H 0.059 0.941 11 C 0.089 3.911 12 N -0.865 5.865 13 Si 0.891 3.109 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.568 3.432 18 O -0.540 6.540 19 C -0.064 4.064 20 C 0.216 3.784 21 N -0.327 5.327 22 C 0.033 3.967 23 C -0.018 4.018 24 C -0.151 4.151 25 C -0.225 4.225 26 C 0.017 3.983 27 C -0.081 4.081 28 O -0.146 6.146 29 C -0.105 4.105 30 C -0.187 4.187 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.184 0.816 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.265 0.735 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.141 0.859 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.782 -4.285 2.747 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.041 3.959 4 C -0.154 4.154 5 C -0.152 4.152 6 C 0.039 3.961 7 N -0.238 5.238 8 C 0.088 3.912 9 C -0.595 4.595 10 H 0.078 0.922 11 C -0.118 4.118 12 N -0.500 5.500 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.201 1.201 17 C 0.360 3.640 18 O -0.423 6.423 19 C -0.070 4.070 20 C -0.098 4.098 21 N -0.003 5.003 22 C 0.009 3.991 23 C -0.067 4.067 24 C -0.171 4.171 25 C -0.244 4.244 26 C -0.036 4.036 27 C -0.138 4.138 28 O -0.041 6.041 29 C -0.125 4.125 30 C -0.206 4.206 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.144 0.856 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.195 0.805 40 H 0.176 0.824 41 H 0.169 0.831 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.159 0.841 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.766 -3.216 2.814 9.752 hybrid contribution -0.549 0.251 -1.118 1.271 sum 8.217 -2.965 1.696 8.899 Atomic orbital electron populations 1.22946 0.79280 1.03124 1.01235 1.86022 1.20672 1.27474 1.89675 1.19029 0.92462 0.83740 1.00699 1.20347 0.90788 0.98283 1.06022 1.22450 1.03872 0.89335 0.99523 1.17952 0.91817 0.84983 1.01300 1.45863 1.06576 1.07559 1.63815 1.20444 0.92299 0.79529 0.98930 1.21162 1.37099 1.09296 0.91926 0.92229 1.24692 0.94553 0.96059 0.96484 1.69864 1.34085 1.18793 1.27282 0.86656 0.78490 0.78689 0.84308 1.20196 1.21037 1.20140 1.17636 0.81820 0.87532 0.77054 1.90426 1.65815 1.34906 1.51164 1.18360 0.91778 0.88697 1.08195 1.24405 0.94361 0.93545 0.97449 1.81254 1.03242 1.12359 1.03403 1.21042 0.92236 0.93808 0.91997 1.19694 0.91276 0.84528 1.11222 1.22343 0.94419 0.96781 1.03569 1.21453 0.97890 0.94168 1.10842 1.22886 0.87049 0.91666 1.02039 1.20409 1.04161 0.85377 1.03805 1.84291 1.36041 1.14321 1.69409 1.20927 0.92991 0.98159 1.00431 1.20948 0.99472 0.91731 1.08466 0.92933 0.88892 0.92973 0.85628 0.80017 0.93525 0.92289 0.92474 0.80519 0.82420 0.83112 0.89745 0.89975 0.89224 0.84150 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.82 10.50 -19.66 -0.21 -5.02 16 3 C 0.09 1.42 6.69 -39.22 -0.26 1.16 16 4 C -0.14 -2.27 9.98 -39.46 -0.39 -2.67 16 5 C -0.13 -2.46 8.99 -39.40 -0.35 -2.82 16 6 C 0.13 2.75 6.49 -83.65 -0.54 2.21 16 7 N -0.52 -11.29 2.71 -116.10 -0.32 -11.61 16 8 C 0.21 5.01 4.23 -5.20 -0.02 4.99 16 9 C -0.56 -14.69 6.92 -34.44 -0.24 -14.92 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.09 2.38 4.18 -17.82 -0.07 2.31 16 12 N -0.86 -23.97 12.72 55.43 0.71 -23.26 16 13 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.57 11.44 7.45 -12.79 -0.10 11.35 16 18 O -0.54 -10.49 12.79 5.18 0.07 -10.43 16 19 C -0.06 -1.21 5.89 -104.37 -0.62 -1.82 16 20 C 0.22 4.76 7.61 -22.48 -0.17 4.59 16 21 N -0.33 -7.96 14.42 41.83 0.60 -7.36 16 22 C 0.03 0.49 9.52 -38.52 -0.37 0.12 16 23 C -0.02 -0.26 6.71 -38.56 -0.26 -0.52 16 24 C -0.15 -1.74 10.91 -38.83 -0.42 -2.16 16 25 C -0.22 -2.50 10.75 -39.93 -0.43 -2.93 16 26 C 0.02 0.22 7.30 -35.33 -0.26 -0.04 16 27 C -0.08 -0.80 10.41 36.00 0.37 -0.43 16 28 O -0.15 -2.43 8.12 4.63 0.04 -2.39 16 29 C -0.10 -2.04 9.16 -39.41 -0.36 -2.40 16 30 C -0.19 -3.15 9.03 -39.46 -0.36 -3.51 16 31 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.18 3.39 4.66 -55.56 -0.26 3.13 16 36 H 0.05 1.18 6.08 -51.92 -0.32 0.86 16 37 H 0.06 1.50 4.29 -51.99 -0.22 1.28 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.18 2.02 7.62 -52.48 -0.40 1.62 16 40 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.14 2.91 6.19 -52.49 -0.32 2.59 16 46 H 0.12 1.77 6.29 -52.49 -0.33 1.44 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -31.90 387.47 -7.30 -39.20 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.15 Total: 4.60 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.86 Total: -6.19 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.99 Total: -42.23 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.10 Total: -17.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.90 -7.30 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001770590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.378 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds