Wall clock time and date at job start Tue Mar 31 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35974 * 116.99940 * 2 1 4 4 C 1.38722 * 119.97998 * 180.02562 * 3 2 1 5 5 C 1.38090 * 120.01266 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.98445 * 359.97412 * 5 4 3 7 7 N 1.40033 * 120.01585 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00083 * 187.97029 * 7 6 5 9 9 C 1.50694 * 109.47476 * 261.41732 * 8 7 6 10 10 H 1.07999 * 120.00385 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00079 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99678 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99891 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47129 * 59.99859 * 13 11 9 15 15 H 1.48495 * 109.46941 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47250 * 299.99809 * 13 11 9 17 17 C 1.34778 * 120.00282 * 7.97450 * 7 6 5 18 18 O 1.21705 * 119.99694 * 3.18824 * 17 7 6 19 19 C 1.46815 * 120.00112 * 183.19292 * 17 7 6 20 20 C 1.43200 * 120.00081 * 351.78204 * 19 17 7 21 21 N 9.02654 * 110.33835 * 0.17162 * 2 1 3 22 22 C 1.38596 * 120.00234 * 171.78039 * 19 17 7 23 23 C 1.40709 * 120.00615 * 179.97438 * 22 19 17 24 24 C 1.38472 * 126.14761 * 180.02562 * 23 22 19 25 25 C 1.40027 * 106.49601 * 179.97438 * 24 23 22 26 26 C 1.35374 * 107.26284 * 0.02562 * 25 24 23 27 27 C 1.50698 * 125.44648 * 180.02562 * 26 25 24 28 28 O 1.33933 * 109.10511 * 359.76717 * 26 25 24 29 29 C 1.38861 * 119.96661 * 0.25196 * 6 5 4 30 30 C 1.38084 * 119.98304 * 359.54428 * 29 6 5 31 31 H 1.08999 * 109.47665 * 59.99844 * 1 2 3 32 32 H 1.09001 * 109.47357 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47230 * 299.99677 * 1 2 3 34 34 H 1.07996 * 119.99642 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00889 * 179.97438 * 5 4 3 36 36 H 1.09009 * 109.47027 * 21.41846 * 8 7 6 37 37 H 1.09003 * 109.47284 * 141.40711 * 8 7 6 38 38 H 0.97001 * 119.99748 * 180.02562 * 12 11 9 39 39 H 1.08008 * 119.99659 * 0.02562 * 22 19 17 40 40 H 1.08003 * 126.75303 * 359.94458 * 24 23 22 41 41 H 1.08007 * 126.36879 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47010 * 90.00252 * 27 26 25 43 43 H 1.09001 * 109.46961 * 210.00131 * 27 26 25 44 44 H 1.09000 * 109.47087 * 329.99707 * 27 26 25 45 45 H 1.07999 * 120.00971 * 179.74368 * 29 6 5 46 46 H 1.07999 * 119.99159 * 180.18410 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0592 2.5137 0.0000 6 6 3.3033 3.6785 0.0005 7 7 3.9390 4.9262 0.0016 8 6 3.1520 6.1492 0.1781 9 6 2.8860 6.7740 -1.1672 10 1 3.2655 6.3070 -2.0640 11 6 2.1588 7.9423 -1.2531 12 7 1.6971 8.5112 -0.1610 13 14 1.8297 8.7171 -2.9206 14 1 1.0746 7.7613 -3.7702 15 1 1.0319 9.9567 -2.7417 16 1 3.1204 9.0489 -3.5758 17 6 5.2749 5.0020 -0.1598 18 8 5.9214 3.9914 -0.3644 19 6 5.9503 6.3037 -0.0886 20 6 5.1785 7.5082 -0.0245 21 7 4.5663 8.4638 0.0254 22 6 7.3348 6.3668 -0.0836 23 6 7.9821 7.6143 -0.0159 24 6 9.3507 7.8248 -0.0035 25 6 9.5392 9.2103 0.0706 26 6 8.3123 9.7817 0.1005 27 6 8.0391 11.2616 0.1789 28 8 7.3802 8.8216 0.0437 29 6 1.9166 3.6055 0.0058 30 6 1.2904 2.3748 0.0010 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 4.0194 0.3777 -0.0005 35 1 5.1378 2.5698 0.0000 36 1 2.2047 5.9054 0.6592 37 1 3.7060 6.8510 0.8016 38 1 1.1852 9.3329 -0.2214 39 1 7.9169 5.4583 -0.1323 40 1 10.1211 7.0689 -0.0426 41 1 10.4872 9.7271 0.0986 42 1 7.9735 11.6728 -0.8284 43 1 7.0979 11.4301 0.7021 44 1 8.8483 11.7523 0.7197 45 1 1.3280 4.5109 0.0104 46 1 0.2119 2.3178 0.0021 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001770590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:16 Heat of formation + Delta-G solvation = 46.960850 kcal Electronic energy + Delta-G solvation = -32529.423664 eV Core-core repulsion = 28160.376752 eV Total energy + Delta-G solvation = -4369.046912 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.59582 -41.94834 -40.57201 -38.34176 -38.07120 -36.21922 -35.01313 -34.49925 -34.24654 -32.26867 -32.00522 -30.66372 -29.13153 -28.41753 -27.63369 -25.38164 -24.65301 -23.34291 -23.21703 -22.77013 -21.42189 -21.27803 -19.35129 -19.06053 -18.76698 -18.02399 -17.47706 -17.30975 -16.65088 -16.56460 -16.53946 -16.28374 -16.25272 -15.63910 -15.39352 -15.14919 -14.67766 -14.47105 -14.30330 -14.20022 -14.12718 -13.97562 -13.85971 -13.82765 -13.77726 -13.57969 -13.50816 -13.20291 -13.00357 -12.90077 -12.80777 -12.73467 -12.36945 -12.25541 -11.81907 -11.75892 -11.66263 -11.45157 -10.73150 -10.60019 -10.53580 -10.33998 -9.91065 -8.88811 -8.46024 -8.17795 -6.35030 -0.91750 0.41196 0.45422 1.07803 1.26639 1.28851 1.34759 1.68049 1.87132 1.89683 2.01191 2.24993 2.42628 2.48581 2.86857 2.97661 3.12755 3.32670 3.45989 3.76761 3.88963 3.95647 4.01416 4.15216 4.30427 4.40072 4.43149 4.43848 4.53135 4.55983 4.59990 4.62354 4.69039 4.74771 4.76567 4.82773 4.95084 5.02746 5.04594 5.13699 5.18276 5.19092 5.38792 5.40907 5.57294 5.58072 5.63530 5.92130 6.10603 6.13651 6.36077 6.52082 6.69155 7.01339 7.18803 7.33925 8.81271 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.003258 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.223301 B = 8592.707931 C =10899.980939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.092 3.908 4 C -0.133 4.133 5 C -0.135 4.135 6 C 0.106 3.894 7 N -0.535 5.535 8 C 0.228 3.772 9 C -0.552 4.552 10 H 0.041 0.959 11 C 0.054 3.946 12 N -0.888 5.888 13 Si 0.935 3.065 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.282 1.282 17 C 0.572 3.428 18 O -0.541 6.541 19 C -0.145 4.145 20 C 0.240 3.760 21 N -0.397 5.397 22 C 0.104 3.896 23 C -0.081 4.081 24 C -0.101 4.101 25 C -0.222 4.222 26 C 0.009 3.991 27 C -0.084 4.084 28 O -0.187 6.187 29 C -0.124 4.124 30 C -0.182 4.182 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.152 0.848 35 H 0.183 0.817 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.215 0.785 40 H 0.202 0.798 41 H 0.190 0.810 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.117 0.883 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.833 -5.581 2.306 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.046 3.954 4 C -0.152 4.152 5 C -0.154 4.154 6 C 0.012 3.988 7 N -0.254 5.254 8 C 0.108 3.892 9 C -0.590 4.590 10 H 0.059 0.941 11 C -0.150 4.150 12 N -0.524 5.524 13 Si 0.762 3.238 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.208 1.208 17 C 0.365 3.635 18 O -0.425 6.425 19 C -0.152 4.152 20 C -0.073 4.073 21 N -0.073 5.073 22 C 0.081 3.919 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.240 4.240 26 C -0.044 4.044 27 C -0.140 4.140 28 O -0.084 6.084 29 C -0.145 4.145 30 C -0.201 4.201 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.231 0.769 40 H 0.219 0.781 41 H 0.207 0.793 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.135 0.865 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.817 -4.545 2.370 12.881 hybrid contribution -1.170 0.701 -0.948 1.661 sum 10.647 -3.843 1.422 11.409 Atomic orbital electron populations 1.23302 0.76983 1.05483 1.01857 1.86027 1.22997 1.26134 1.89218 1.19090 0.92606 0.84305 0.99386 1.20616 0.91357 0.98435 1.04743 1.22445 1.03798 0.89324 0.99883 1.18265 0.92415 0.85152 1.02974 1.45759 1.07184 1.07094 1.65314 1.19929 0.91466 0.80417 0.97392 1.21163 1.36466 1.09241 0.92097 0.94083 1.25226 0.94543 0.96436 0.98809 1.69949 1.34861 1.18983 1.28609 0.85963 0.78040 0.78365 0.81477 1.19488 1.20249 1.20770 1.17774 0.81223 0.88210 0.76335 1.90387 1.65453 1.34937 1.51709 1.18224 0.93072 0.86799 1.17057 1.24939 0.93383 0.93626 0.95350 1.81212 1.04911 1.14230 1.06982 1.21580 0.90687 0.95432 0.84158 1.20054 0.92800 0.84157 1.15886 1.22994 0.93513 0.97988 0.97515 1.21982 0.98463 0.94090 1.09478 1.23779 0.87739 0.92561 1.00309 1.20615 1.04672 0.84122 1.04627 1.84301 1.38040 1.15633 1.70398 1.20849 0.92832 0.98458 1.02351 1.21136 1.00762 0.90844 1.07366 0.92449 0.85787 0.92183 0.83056 0.80052 0.95578 0.93522 0.92715 0.76866 0.78112 0.79250 0.88863 0.91867 0.85589 0.86537 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.03 10.50 -93.26 -0.98 -10.01 16 3 C 0.09 2.94 6.69 22.50 0.15 3.09 16 4 C -0.13 -4.32 9.98 22.35 0.22 -4.10 16 5 C -0.14 -5.08 8.99 22.38 0.20 -4.88 16 6 C 0.11 4.56 6.49 38.13 0.25 4.81 16 7 N -0.54 -24.71 2.71 -639.44 -1.74 -26.45 16 8 C 0.23 11.94 4.23 85.63 0.36 12.31 16 9 C -0.55 -30.96 6.92 25.60 0.18 -30.78 16 10 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 11 C 0.05 3.04 4.18 84.66 0.35 3.40 16 12 N -0.89 -51.92 12.72 21.45 0.27 -51.65 16 13 Si 0.94 45.95 29.54 68.60 2.03 47.97 16 14 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 17 C 0.57 23.96 7.45 86.49 0.64 24.61 16 18 O -0.54 -21.19 12.79 -4.37 -0.06 -21.24 16 19 C -0.15 -5.68 5.89 -19.70 -0.12 -5.79 16 20 C 0.24 11.27 7.61 88.33 0.67 11.94 16 21 N -0.40 -20.76 14.42 18.98 0.27 -20.49 16 22 C 0.10 2.94 9.52 22.96 0.22 3.16 16 23 C -0.08 -2.22 6.71 22.93 0.15 -2.07 16 24 C -0.10 -1.84 10.91 22.76 0.25 -1.59 16 25 C -0.22 -3.94 10.75 22.04 0.24 -3.70 16 26 C 0.01 0.22 7.30 25.02 0.18 0.40 16 27 C -0.08 -1.55 10.41 71.24 0.74 -0.81 16 28 O -0.19 -6.23 8.12 -6.34 -0.05 -6.29 16 29 C -0.12 -5.12 9.16 22.38 0.20 -4.91 16 30 C -0.18 -6.14 9.03 22.35 0.20 -5.94 16 31 H 0.06 1.04 7.66 -2.39 -0.02 1.03 16 32 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.06 7.66 -2.38 -0.02 1.04 16 34 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 35 H 0.18 6.79 4.66 -51.62 -0.24 6.55 16 36 H 0.03 1.45 6.08 -2.38 -0.01 1.43 16 37 H 0.05 2.60 4.29 -2.44 -0.01 2.58 16 38 H 0.26 14.89 8.31 -92.71 -0.77 14.11 16 39 H 0.21 4.17 7.62 -2.91 -0.02 4.15 16 40 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.12 5.28 6.19 -2.91 -0.02 5.26 16 46 H 0.15 4.12 6.29 -2.91 -0.02 4.10 16 Total: -1.00 -75.99 387.47 6.79 -69.20 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.82 Total: 18.34 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 6.22 Total: 0.61 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -1.19 Total: -98.58 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.09 Total: -37.54 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -75.99 6.79 -69.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001770590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.161 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds