Wall clock time and date at job start Tue Mar 31 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35979 * 116.99704 * 2 1 4 4 C 1.38726 * 119.98005 * 179.97438 * 3 2 1 5 5 C 1.38082 * 120.01484 * 180.02562 * 4 3 2 6 6 C 1.38866 * 119.98354 * 359.97385 * 5 4 3 7 7 N 1.40035 * 120.01569 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99877 * 188.20045 * 7 6 5 9 9 C 1.50706 * 109.47014 * 84.79287 * 8 7 6 10 10 H 1.07995 * 119.99812 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99737 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00511 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99733 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47197 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47265 * 119.99868 * 13 11 9 16 16 H 1.48501 * 109.46784 * 239.99579 * 13 11 9 17 17 C 1.34774 * 120.00081 * 8.47942 * 7 6 5 18 18 O 1.21703 * 119.99733 * 5.64451 * 17 7 6 19 19 C 1.46819 * 119.99646 * 185.64375 * 17 7 6 20 20 C 1.43203 * 120.00033 * 98.59574 * 19 17 7 21 21 N 9.22469 * 128.26475 * 17.24088 * 2 1 3 22 22 C 1.38595 * 120.00122 * 278.58702 * 19 17 7 23 23 C 1.40707 * 119.99732 * 4.23151 * 22 19 17 24 24 C 1.38482 * 126.13905 * 184.84777 * 23 22 19 25 25 C 1.40029 * 106.49305 * 179.97438 * 24 23 22 26 26 C 1.35376 * 107.26281 * 0.02562 * 25 24 23 27 27 C 1.50694 * 125.44780 * 180.02562 * 26 25 24 28 28 O 1.33931 * 109.10558 * 359.72933 * 26 25 24 29 29 C 1.38864 * 119.96473 * 0.28186 * 6 5 4 30 30 C 1.38090 * 119.98324 * 359.46322 * 29 6 5 31 31 H 1.09003 * 109.47456 * 60.00274 * 1 2 3 32 32 H 1.09005 * 109.46900 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47150 * 299.99642 * 1 2 3 34 34 H 1.07996 * 119.99212 * 0.02632 * 4 3 2 35 35 H 1.07995 * 120.00950 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47286 * 204.79329 * 8 7 6 37 37 H 1.09002 * 109.47305 * 324.79858 * 8 7 6 38 38 H 0.97000 * 119.99985 * 180.02562 * 12 11 9 39 39 H 1.08002 * 119.99906 * 184.22391 * 22 19 17 40 40 H 1.07994 * 126.75718 * 359.97438 * 24 23 22 41 41 H 1.07997 * 126.37003 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47834 * 89.99580 * 27 26 25 43 43 H 1.09002 * 109.47403 * 210.00141 * 27 26 25 44 44 H 1.09005 * 109.46820 * 329.99248 * 27 26 25 45 45 H 1.08004 * 120.00904 * 179.70288 * 29 6 5 46 46 H 1.07998 * 119.99271 * 180.23068 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5138 0.0011 6 6 3.3032 3.6786 0.0005 7 7 3.9389 4.9263 0.0005 8 6 3.1525 6.1491 0.1809 9 6 2.9545 6.4065 1.6526 10 1 3.3723 5.7270 2.3806 11 6 2.2391 7.5089 2.0694 12 7 1.7290 8.3356 1.1829 13 14 1.9943 7.8284 3.8936 14 1 2.6619 6.7583 4.6775 15 1 2.5838 9.1441 4.2492 16 1 0.5422 7.8364 4.2042 17 6 5.2735 5.0027 -0.1711 18 8 5.9123 3.9992 -0.4282 19 6 5.9566 6.2964 -0.0478 20 6 6.6175 6.6436 1.1742 21 7 7.1418 6.9174 2.1467 22 6 5.9620 7.1816 -1.1142 23 6 5.2387 6.8797 -2.2827 24 6 5.2305 7.6208 -3.4526 25 6 4.3796 6.9518 -4.3410 26 6 3.9105 5.8557 -3.6996 27 6 2.9592 4.8426 -4.2822 28 8 4.4322 5.8124 -2.4669 29 6 1.9165 3.6055 0.0054 30 6 1.2903 2.3747 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.0194 0.3778 0.0005 35 1 5.1377 2.5699 0.0019 36 1 3.6810 6.9905 -0.2672 37 1 2.1819 6.0314 -0.3010 38 1 1.2260 9.1114 1.4762 39 1 6.5214 8.1031 -1.0483 40 1 5.7734 8.5348 -3.6424 41 1 4.1419 7.2539 -5.3502 42 1 3.5263 4.0520 -4.7735 43 1 2.3529 4.4129 -3.4847 44 1 2.3100 5.3300 -5.0096 45 1 1.3278 4.5110 0.0098 46 1 0.2119 2.3177 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001770591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:20 Heat of formation + Delta-G solvation = 42.286859 kcal Electronic energy + Delta-G solvation = -33766.514876 eV Core-core repulsion = 29397.265284 eV Total energy + Delta-G solvation = -4369.249592 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49617 -40.39279 -39.26926 -37.08799 -36.20720 -35.07592 -34.05882 -33.16734 -32.66148 -31.23694 -30.62599 -29.11455 -27.53613 -27.25831 -26.67128 -23.68175 -23.34843 -22.40558 -21.82255 -21.56503 -20.24977 -19.90896 -17.81290 -17.41751 -17.01448 -16.77656 -16.48432 -16.06846 -15.61214 -15.49705 -15.23112 -14.82443 -14.41476 -14.38526 -14.06684 -13.55943 -13.32733 -13.20536 -13.14326 -13.01428 -12.94008 -12.81525 -12.70737 -12.54776 -12.49208 -12.29952 -12.13888 -12.09821 -11.83302 -11.67768 -11.50276 -11.24556 -10.92077 -10.88205 -10.51171 -10.33238 -10.21783 -9.96731 -9.63343 -9.06990 -8.89874 -8.63979 -8.50500 -7.65060 -6.97606 -6.26706 -4.34655 0.37644 1.75554 1.83620 2.19402 2.66421 2.81160 3.00186 3.16568 3.18351 3.27368 3.33466 3.47879 3.58040 3.85270 4.23087 4.27469 4.40124 4.76311 4.81908 4.94334 5.06969 5.10896 5.11505 5.23653 5.28269 5.34155 5.36922 5.46509 5.51467 5.56991 5.70093 5.74347 5.80461 5.90087 5.95721 6.05811 6.07107 6.19085 6.31117 6.51407 6.54509 6.70851 6.77211 6.82917 7.06501 7.08030 7.20167 7.54157 7.65882 7.78116 7.81471 7.89369 8.02162 8.53355 8.74252 9.33380 10.79031 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.006473 B = 0.005017 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4324.762157 B = 5579.301108 C = 7475.928350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.325 6.325 3 C 0.085 3.915 4 C -0.134 4.134 5 C -0.132 4.132 6 C 0.144 3.856 7 N -0.510 5.510 8 C 0.232 3.768 9 C -0.538 4.538 10 H 0.062 0.938 11 C 0.071 3.929 12 N -0.887 5.887 13 Si 0.892 3.108 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.573 3.427 18 O -0.528 6.528 19 C -0.073 4.073 20 C 0.273 3.727 21 N -0.411 5.411 22 C 0.033 3.967 23 C -0.021 4.021 24 C -0.142 4.142 25 C -0.225 4.225 26 C 0.028 3.972 27 C -0.081 4.081 28 O -0.143 6.143 29 C -0.103 4.103 30 C -0.186 4.186 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.124 0.876 35 H 0.177 0.823 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.266 0.734 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 -5.909 -12.628 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.040 3.960 4 C -0.153 4.153 5 C -0.151 4.151 6 C 0.049 3.951 7 N -0.228 5.228 8 C 0.113 3.887 9 C -0.576 4.576 10 H 0.080 0.920 11 C -0.132 4.132 12 N -0.525 5.525 13 Si 0.719 3.281 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.206 1.206 17 C 0.361 3.639 18 O -0.408 6.408 19 C -0.079 4.079 20 C -0.041 4.041 21 N -0.087 5.087 22 C 0.010 3.990 23 C -0.071 4.071 24 C -0.162 4.162 25 C -0.244 4.244 26 C -0.026 4.026 27 C -0.137 4.137 28 O -0.038 6.038 29 C -0.123 4.123 30 C -0.206 4.206 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.193 0.807 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.157 0.843 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.504 -6.180 -11.020 12.645 hybrid contribution -0.958 0.745 0.714 1.408 sum -0.453 -5.435 -10.306 11.660 Atomic orbital electron populations 1.22940 0.79306 1.03095 1.01205 1.86025 1.20642 1.27505 1.89711 1.18988 0.92363 0.83745 1.00874 1.20305 0.90849 0.98174 1.05981 1.22269 1.03512 0.89571 0.99755 1.17834 0.91694 0.84843 1.00740 1.45791 1.06389 1.07650 1.63011 1.19709 0.91612 0.79564 0.97821 1.21410 1.35025 1.09828 0.91333 0.91989 1.24844 0.94907 0.95464 0.98012 1.69917 1.35111 1.14020 1.33472 0.86513 0.78058 0.78537 0.84994 1.19546 1.20660 1.20642 1.17610 0.82032 0.87290 0.76938 1.90501 1.66435 1.34945 1.48947 1.17894 1.03407 0.96741 0.89898 1.24874 0.93007 0.93816 0.92409 1.81246 1.10328 1.07844 1.09297 1.20787 0.93390 0.96905 0.87938 1.19405 1.00349 0.90490 0.96817 1.22295 1.01048 1.00864 0.92000 1.21424 1.03721 0.97375 1.01851 1.22821 0.98246 0.98565 0.82939 1.20405 0.96334 0.96089 1.00861 1.84233 1.47978 1.40510 1.31083 1.20841 0.92834 0.98017 1.00613 1.20930 0.99400 0.91722 1.08522 0.92999 0.88948 0.92925 0.85761 0.80711 0.93303 0.93771 0.92454 0.81482 0.82569 0.83116 0.89824 0.89973 0.89179 0.84348 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.75 10.50 -19.67 -0.21 -4.95 16 3 C 0.09 1.39 6.69 -39.22 -0.26 1.13 16 4 C -0.13 -2.27 9.98 -39.46 -0.39 -2.67 16 5 C -0.13 -2.50 8.96 -39.41 -0.35 -2.85 16 6 C 0.14 2.88 6.46 -83.65 -0.54 2.34 16 7 N -0.51 -10.67 1.93 -116.09 -0.22 -10.90 16 8 C 0.23 5.28 3.72 -5.19 -0.02 5.26 16 9 C -0.54 -13.82 9.36 -34.44 -0.32 -14.14 16 10 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 11 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 12 N -0.89 -23.60 13.29 55.43 0.74 -22.87 16 13 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.57 11.72 4.81 -12.79 -0.06 11.66 16 18 O -0.53 -11.18 13.63 5.19 0.07 -11.11 16 19 C -0.07 -1.35 4.34 -104.37 -0.45 -1.80 16 20 C 0.27 5.36 15.37 -22.40 -0.34 5.02 16 21 N -0.41 -8.53 18.55 41.92 0.78 -7.75 16 22 C 0.03 0.50 8.82 -38.52 -0.34 0.16 16 23 C -0.02 -0.33 5.84 -38.56 -0.23 -0.55 16 24 C -0.14 -1.76 10.91 -38.82 -0.42 -2.19 16 25 C -0.22 -2.68 10.75 -39.93 -0.43 -3.11 16 26 C 0.03 0.38 7.30 -35.33 -0.26 0.12 16 27 C -0.08 -0.84 10.41 36.00 0.37 -0.46 16 28 O -0.14 -2.40 6.84 4.65 0.03 -2.37 16 29 C -0.10 -1.91 9.26 -39.40 -0.36 -2.28 16 30 C -0.19 -3.01 9.03 -39.46 -0.36 -3.37 16 31 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 34 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.18 3.49 4.74 -55.08 -0.26 3.23 16 36 H 0.05 1.13 5.14 -51.93 -0.27 0.87 16 37 H 0.04 1.05 6.20 -51.93 -0.32 0.73 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.14 2.69 6.11 -52.48 -0.32 2.37 16 46 H 0.12 1.68 6.29 -52.49 -0.33 1.35 16 LS Contribution 397.59 15.07 5.99 5.99 Total: -1.00 -31.43 397.59 -6.95 -38.37 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.22 Total: 4.33 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.88 Total: -4.68 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 1.29 Total: -41.52 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.10 Total: -18.43 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.43 -6.95 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001770591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.661 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds