Wall clock time and date at job start Tue Mar 31 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35979 * 116.99704 * 2 1 4 4 C 1.38726 * 119.98005 * 179.97438 * 3 2 1 5 5 C 1.38082 * 120.01484 * 180.02562 * 4 3 2 6 6 C 1.38866 * 119.98354 * 359.97385 * 5 4 3 7 7 N 1.40035 * 120.01569 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99877 * 188.20045 * 7 6 5 9 9 C 1.50706 * 109.47014 * 84.79287 * 8 7 6 10 10 H 1.07995 * 119.99812 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99737 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00511 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99733 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47197 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47265 * 119.99868 * 13 11 9 16 16 H 1.48501 * 109.46784 * 239.99579 * 13 11 9 17 17 C 1.34774 * 120.00081 * 8.47942 * 7 6 5 18 18 O 1.21703 * 119.99733 * 5.64451 * 17 7 6 19 19 C 1.46819 * 119.99646 * 185.64375 * 17 7 6 20 20 C 1.43203 * 120.00033 * 98.59574 * 19 17 7 21 21 N 9.22469 * 128.26475 * 17.24088 * 2 1 3 22 22 C 1.38595 * 120.00122 * 278.58702 * 19 17 7 23 23 C 1.40707 * 119.99732 * 4.23151 * 22 19 17 24 24 C 1.38482 * 126.13905 * 184.84777 * 23 22 19 25 25 C 1.40029 * 106.49305 * 179.97438 * 24 23 22 26 26 C 1.35376 * 107.26281 * 0.02562 * 25 24 23 27 27 C 1.50694 * 125.44780 * 180.02562 * 26 25 24 28 28 O 1.33931 * 109.10558 * 359.72933 * 26 25 24 29 29 C 1.38864 * 119.96473 * 0.28186 * 6 5 4 30 30 C 1.38090 * 119.98324 * 359.46322 * 29 6 5 31 31 H 1.09003 * 109.47456 * 60.00274 * 1 2 3 32 32 H 1.09005 * 109.46900 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47150 * 299.99642 * 1 2 3 34 34 H 1.07996 * 119.99212 * 0.02632 * 4 3 2 35 35 H 1.07995 * 120.00950 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47286 * 204.79329 * 8 7 6 37 37 H 1.09002 * 109.47305 * 324.79858 * 8 7 6 38 38 H 0.97000 * 119.99985 * 180.02562 * 12 11 9 39 39 H 1.08002 * 119.99906 * 184.22391 * 22 19 17 40 40 H 1.07994 * 126.75718 * 359.97438 * 24 23 22 41 41 H 1.07997 * 126.37003 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47834 * 89.99580 * 27 26 25 43 43 H 1.09002 * 109.47403 * 210.00141 * 27 26 25 44 44 H 1.09005 * 109.46820 * 329.99248 * 27 26 25 45 45 H 1.08004 * 120.00904 * 179.70288 * 29 6 5 46 46 H 1.07998 * 119.99271 * 180.23068 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5138 0.0011 6 6 3.3032 3.6786 0.0005 7 7 3.9389 4.9263 0.0005 8 6 3.1525 6.1491 0.1809 9 6 2.9545 6.4065 1.6526 10 1 3.3723 5.7270 2.3806 11 6 2.2391 7.5089 2.0694 12 7 1.7290 8.3356 1.1829 13 14 1.9943 7.8284 3.8936 14 1 2.6619 6.7583 4.6775 15 1 2.5838 9.1441 4.2492 16 1 0.5422 7.8364 4.2042 17 6 5.2735 5.0027 -0.1711 18 8 5.9123 3.9992 -0.4282 19 6 5.9566 6.2964 -0.0478 20 6 6.6175 6.6436 1.1742 21 7 7.1418 6.9174 2.1467 22 6 5.9620 7.1816 -1.1142 23 6 5.2387 6.8797 -2.2827 24 6 5.2305 7.6208 -3.4526 25 6 4.3796 6.9518 -4.3410 26 6 3.9105 5.8557 -3.6996 27 6 2.9592 4.8426 -4.2822 28 8 4.4322 5.8124 -2.4669 29 6 1.9165 3.6055 0.0054 30 6 1.2903 2.3747 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.0194 0.3778 0.0005 35 1 5.1377 2.5699 0.0019 36 1 3.6810 6.9905 -0.2672 37 1 2.1819 6.0314 -0.3010 38 1 1.2260 9.1114 1.4762 39 1 6.5214 8.1031 -1.0483 40 1 5.7734 8.5348 -3.6424 41 1 4.1419 7.2539 -5.3502 42 1 3.5263 4.0520 -4.7735 43 1 2.3529 4.4129 -3.4847 44 1 2.3100 5.3300 -5.0096 45 1 1.3278 4.5110 0.0098 46 1 0.2119 2.3177 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001770591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:19 Heat of formation + Delta-G solvation = 25.939649 kcal Electronic energy + Delta-G solvation = -33767.223744 eV Core-core repulsion = 29397.265284 eV Total energy + Delta-G solvation = -4369.958460 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.57742 -41.83823 -40.54114 -38.42598 -37.68611 -36.64450 -35.32058 -34.57496 -34.19761 -32.27745 -32.00566 -30.50782 -29.15690 -28.38559 -27.80710 -25.34598 -24.66906 -23.65072 -23.22095 -22.71649 -21.49905 -21.15698 -19.06006 -18.90508 -18.68977 -18.23060 -17.97019 -17.19937 -16.87603 -16.59011 -16.56398 -16.39963 -15.94112 -15.67431 -15.49354 -14.87290 -14.66479 -14.61459 -14.40743 -14.36085 -14.06685 -13.98619 -13.83900 -13.81538 -13.74631 -13.68802 -13.58754 -13.31881 -13.29574 -13.02481 -12.81871 -12.68097 -12.67179 -12.30763 -12.25932 -11.77687 -11.71243 -11.47594 -10.71395 -10.70636 -10.51618 -10.39686 -9.90932 -8.79032 -8.49773 -8.19972 -6.39108 -0.82599 0.33974 0.43646 1.12182 1.22964 1.29978 1.35055 1.44502 1.66776 1.74414 1.97770 2.05350 2.32445 2.41422 2.51541 2.89456 2.98505 3.03669 3.47128 3.80175 3.92110 3.95283 4.02852 4.09626 4.30603 4.38537 4.44589 4.46287 4.53488 4.57786 4.60715 4.66457 4.69304 4.75621 4.80836 4.85409 4.94172 5.05907 5.09310 5.15462 5.18965 5.21984 5.38731 5.41715 5.61315 5.62021 5.64175 5.96406 6.08982 6.16928 6.34322 6.42248 6.53423 6.70748 7.05153 7.31188 8.78256 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.006473 B = 0.005017 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4324.762157 B = 5579.301108 C = 7475.928350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.094 3.906 4 C -0.136 4.136 5 C -0.143 4.143 6 C 0.117 3.883 7 N -0.513 5.513 8 C 0.257 3.743 9 C -0.543 4.543 10 H 0.037 0.963 11 C 0.039 3.961 12 N -0.905 5.905 13 Si 0.936 3.064 14 H -0.284 1.284 15 H -0.277 1.277 16 H -0.268 1.268 17 C 0.575 3.425 18 O -0.548 6.548 19 C -0.143 4.143 20 C 0.289 3.711 21 N -0.453 5.453 22 C 0.082 3.918 23 C -0.079 4.079 24 C -0.105 4.105 25 C -0.225 4.225 26 C 0.018 3.982 27 C -0.082 4.082 28 O -0.177 6.177 29 C -0.113 4.113 30 C -0.178 4.178 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.046 0.954 37 H 0.031 0.969 38 H 0.270 0.730 39 H 0.208 0.792 40 H 0.196 0.804 41 H 0.187 0.813 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -5.671 -14.995 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.048 3.952 4 C -0.155 4.155 5 C -0.162 4.162 6 C 0.022 3.978 7 N -0.231 5.231 8 C 0.137 3.863 9 C -0.582 4.582 10 H 0.055 0.945 11 C -0.163 4.163 12 N -0.544 5.544 13 Si 0.762 3.238 14 H -0.209 1.209 15 H -0.202 1.202 16 H -0.193 1.193 17 C 0.365 3.635 18 O -0.430 6.430 19 C -0.150 4.150 20 C -0.024 4.024 21 N -0.131 5.131 22 C 0.059 3.941 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.244 4.244 26 C -0.035 4.035 27 C -0.138 4.138 28 O -0.073 6.073 29 C -0.133 4.133 30 C -0.197 4.197 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.225 0.775 40 H 0.213 0.787 41 H 0.204 0.796 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.922 -5.950 -13.388 14.680 hybrid contribution -0.674 0.574 1.135 1.439 sum -1.596 -5.376 -12.253 13.476 Atomic orbital electron populations 1.23314 0.76820 1.05440 1.02050 1.86030 1.23155 1.26235 1.89246 1.18996 0.92203 0.84539 0.99447 1.20478 0.91756 0.97957 1.05305 1.22154 1.02953 0.90234 1.00907 1.18116 0.92470 0.84887 1.02310 1.45684 1.06654 1.07320 1.63477 1.19221 0.90987 0.80381 0.95669 1.21481 1.34780 1.09434 0.92494 0.94453 1.25330 0.94856 0.95409 1.00723 1.69954 1.35600 1.14356 1.34490 0.85837 0.78393 0.77912 0.81613 1.20939 1.20236 1.19323 1.17868 0.81679 0.87936 0.76061 1.90463 1.66647 1.36037 1.49822 1.17703 1.08100 0.97970 0.91207 1.25104 0.92049 0.92910 0.92312 1.81220 1.12483 1.09242 1.10106 1.21409 0.90025 0.96406 0.86232 1.19794 1.02672 0.91957 0.98307 1.22906 0.98719 1.00616 0.90172 1.21924 1.02899 0.96321 1.03220 1.23698 0.97872 0.99628 0.82323 1.20591 0.96162 0.96209 1.00816 1.84236 1.48859 1.41556 1.32631 1.20808 0.92260 0.98584 1.01693 1.21163 1.00844 0.90653 1.06991 0.91700 0.86031 0.92441 0.84006 0.82115 0.93644 0.95134 0.92072 0.77533 0.78709 0.79554 0.88412 0.91816 0.86092 0.85731 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -9.00 10.50 -93.31 -0.98 -9.98 16 3 C 0.09 2.96 6.69 22.50 0.15 3.11 16 4 C -0.14 -4.64 9.98 22.35 0.22 -4.41 16 5 C -0.14 -5.68 8.96 22.38 0.20 -5.48 16 6 C 0.12 4.90 6.46 38.13 0.25 5.15 16 7 N -0.51 -22.64 1.93 -639.43 -1.24 -23.88 16 8 C 0.26 12.20 3.72 85.63 0.32 12.52 16 9 C -0.54 -28.99 9.36 25.60 0.24 -28.75 16 10 H 0.04 2.14 7.81 -2.91 -0.02 2.12 16 11 C 0.04 2.04 5.46 84.65 0.46 2.50 16 12 N -0.91 -48.35 13.29 21.44 0.28 -48.06 16 13 Si 0.94 43.42 29.54 68.60 2.03 45.45 16 14 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 C 0.58 24.87 4.81 86.49 0.42 25.29 16 18 O -0.55 -24.76 13.63 -4.36 -0.06 -24.82 16 19 C -0.14 -5.51 4.34 -19.70 -0.09 -5.60 16 20 C 0.29 11.93 15.37 88.31 1.36 13.29 16 21 N -0.45 -19.76 18.55 19.03 0.35 -19.41 16 22 C 0.08 2.43 8.82 22.96 0.20 2.63 16 23 C -0.08 -2.33 5.84 22.93 0.13 -2.20 16 24 C -0.10 -2.22 10.91 22.76 0.25 -1.98 16 25 C -0.23 -4.57 10.75 22.04 0.24 -4.33 16 26 C 0.02 0.46 7.30 25.02 0.18 0.64 16 27 C -0.08 -1.57 10.41 71.23 0.74 -0.83 16 28 O -0.18 -5.92 6.84 -6.27 -0.04 -5.96 16 29 C -0.11 -4.33 9.26 22.38 0.21 -4.13 16 30 C -0.18 -5.61 9.03 22.35 0.20 -5.41 16 31 H 0.06 1.00 7.66 -2.39 -0.02 0.99 16 32 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 34 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.16 6.88 4.74 -43.95 -0.21 6.67 16 36 H 0.05 2.18 5.14 -2.39 -0.01 2.17 16 37 H 0.03 1.52 6.20 -2.39 -0.01 1.50 16 38 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 39 H 0.21 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.20 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.12 5.07 6.11 -2.91 -0.02 5.05 16 46 H 0.15 3.82 6.29 -2.91 -0.02 3.81 16 Total: -1.00 -71.98 397.59 7.99 -63.99 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.85 Total: 19.22 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 6.80 Total: 3.45 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -0.60 Total: -91.35 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.08 Total: -40.76 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.98 7.99 -63.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001770591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.934 kcal (2) G-P(sol) polarization free energy of solvation -71.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds